BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480920
Length=1445
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20815.1 | Symbols: QWRF3 | Family of unknown function (DUF5... 2146 0.0
AT2G20616.1 | Symbols: | Family of unknown function (DUF566) ... 407 2e-112
> AT2G20815.1 | Symbols: QWRF3 | Family of unknown function (DUF566)
| chr2:8959988-8962001 FORWARD LENGTH=1533
Length=1533
Score = 2146 bits (1162), Expect = 0.0
Identities = 1358/1451 (94%), Gaps = 20/1451 (1%)
Strand=Plus/Plus
Query 1 ATGAAGAGCTGTGAGCAT---CTACTCAAACCAAGAAGAGGAAAGTCCCGCGA-GTTAAG 56
|||||||||||||||||| ||||||||| |||||||||||||||||||||| ||| ||
Sbjct 1 ATGAAGAGCTGTGAGCATGAACTACTCAAAACAAGAAGAGGAAAGTCCCGCGAGGTT-AG 59
Query 57 TTCACGTTTTCTCTCCTCTCCGTCTGCATTTTCTTCTCCTAACCGCAGAAACTCCACTTC 116
||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||
Sbjct 60 TTCACGTTTTCTCTCTTCGCCGTCTGCATCTTCTTCTCCTAACCGCAGAAACTCCACTTC 119
Query 117 TAATTCATCTACCAAGAGAGATGATCAGAACAACAACGGTCTGAAAGTTCATCTCGGCCT 176
||||||| | | |||||||||||||||||||||||| | |||| |||||| ||| |
Sbjct 120 TAATTCA--T--C--GAGAGATGATCAGAACAACAACGGGGTAAAAGGTCATCTAGGCTT 173
Query 177 GAAAAAGCATGATAGGATGTCAGATGGCACACGGGTTTGTTTCGGGTTACCAAACCAAAG 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 GAAAAAGCATGATAGGATGTCAGATGGCACACGGGTTTGTTTCGGGTTACCAAACCAAAG 233
Query 237 TAGCATAGAAGTTGACTCAAAAGAAAATCGTAGGCCTTCACCGTGGATGGATGATGAGGA 296
|||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 234 TAGCATAGAAGTTGACACAAAAGAAAATCGTATGCCTTCACCGTGGATCAATGATGAGGA 293
Query 297 TCATGTCATACTTCCTGGCAGATTTTCTGTTGATGAATGTACATTGTACAGAGCATCATC 356
| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 294 TAACGTCATACTTCCTGGCAGATTTTCTGTTGATGAATGTGCATTGTACAGAGCATCATC 353
Query 357 AAGGAGAAACTCATGCTCTCTACTATATGAGTCCTTAAATGATGAATCAGATTCAGAGTT 416
||||||||||||||||||||| |||||||||||||| || |||||| |||| ||||||||
Sbjct 354 AAGGAGAAACTCATGCTCTCTGCTATATGAGTCCTTCAACGATGAAACAGACTCAGAGTT 413
Query 417 GAGCGATGTGTCCTGTGCTTCAAGTCTTAGTACAAATCGTTCATCCCGGAACCATAATCC 476
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 414 GAGTGATGTGTCCTGTGCTTCAAGTCTTAGTACAAATCGTTCATCCTGGAACCATAAACC 473
Query 477 TGGTATCAAGGTCTCTTCTAAGTATCTGCATGATTTAACAGCTAAACCGAGCAAAGGCAA 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 CGGTATCAAGGTCTCTTCTAAGTATCTGCATGATTTAACAGCTAAACCGAGCAAAGGCAA 533
Query 537 CAACAATGTGACCAAAATAAGGTCACAAGAAGATTCACAGAGAGCTAATAGCTTTAGGGG 596
|||||| ||||||| ||||||||||||| |||||||||||| ||||||||| || |||
Sbjct 534 CAACAA---GACCAAACTAAGGTCACAAGATGATTCACAGAGAACTAATAGCTCTAAGGG 590
Query 597 CATTGAGAATAGGA-TGAAGAGGAATAATTCAGTGTCCAGGTATGGAAGTTCGATGTCTC 655
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 CATTGAGAATA-GATTGCAGAGGAATAATTCAGTGTCCAGGTATGGAAGTTCGATGTCTC 649
Query 656 AGTGGGCACTTTCACCAGGAAGGTCATTGGACACCCAGGCAGTGACAGTTCCAAGTTCAA 715
||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 650 AGTGGGCTCTTTCACCAGGAAGGTCATTGGACACTCAGGCGGTGACAGTTCCAAGTTCAA 709
Query 716 AACTGAAGCCTCCAAGAGGCAAAGGCGTGGGTAAACTAATCAACCTTGGTTTCGATTTCT 775
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 710 AACTGAAGCCTCCAAGAGGAAAAGGCGTGGGTAAACTAATCAACCTTGGTTTCGATTTCT 769
Query 776 TCAGCAGCAAGAACAAGTCATCGCCCTTTACTTCACCACTAAAACCAAAGACATGTGACA 835
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 TCAGGAGCAAGAACAAGTCATCGCCCTTTACTTCACCACTAAAACCAAAGACATGTGACA 829
Query 836 CAGAATCTGCTCATCAGCTGAAGCTTATGAATAACCGGTTGCTTCAATGGAGGTTTGTCA 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 CAGAATCTGCTCATCAGCTGAAGCTTATGAATAACCGGTTGCTTCAATGGAGGTTTGTCA 889
Query 896 ATGCTAGAGCCTCTGCTGCAAGCAATATCGTAGCCTCCCAAGAAAAGAATCAACTACTCT 955
|||||||||||| || || || ||| | ||||||||||||||||||||||||||||||||
Sbjct 890 ATGCTAGAGCCTGTGATGTAAACAAGAACGTAGCCTCCCAAGAAAAGAATCAACTACTCT 949
Query 956 GTGCATGGGATACTCTTACCAAGTTAAA-ACATTTGGTTCTGCAAGAGAGAATCAAACTG 1014
|||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||
Sbjct 950 GTGCATGGGATACTCTTATCAAGTTAAATA-ATTTGGTTCTGCAAGAGAGAATCAAACTG 1008
Query 1015 CAGAAGAAAAACCTGGAGATGAAGCTGATTTATGTGCTTCTTTCTCAAGTTAAGCATCTT 1074
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1009 CAGAAGAAAAACCTGGAGATGAAGCTGAATTATGTGTTTCTTTCTCAAGTTAAGCATCTT 1068
Query 1075 GAAGCTTGGGAGGACATGGAAAGACAACACCTTTCATCTCTATCCATGACCAGAGATTCC 1134
|||||||||||||||||||||| |||||||||||||||||| ||||| | ||||||||||
Sbjct 1069 GAAGCTTGGGAGGACATGGAAATACAACACCTTTCATCTCTGTCCATAATCAGAGATTCC 1128
Query 1135 CTGCATTCTGTTCTTTCTAGGCTTCCCCTCAAAGAAGGTGCAAAGGTGAACTTGGAATCA 1194
||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 1129 CTGCATTCTGTTCTTTCCAGGCTTCCCCTCAAAGAAGGCGCGAAGGTGAACTTGGAATCA 1188
Query 1195 GCTGTCACTTTGTTTAAGAATGCAGAAACAGTCACTGATGCTATCATTTCAACTGTGAAT 1254
||||||| | | |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1189 GCTGTCAGTATAATTAAGAATGCAGAAGCAGTCACTGATGCTATCATTTCAACTGTGGAT 1248
Query 1255 -ATTTATGCTCCCACGATGGAGAGTATTGTTCCACTTGCTTCCCAACTAGCGGAAGTGGC 1313
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1249 GATT-ATGCTCCCACGATGGAGGGTATTGTTCCACTTGCTTCCCAACTAGCGGAAGTGGT 1307
Query 1314 CACACAAGAGAAACTGATGCTGGAGCAATGCCATGACCTTTTGAGAATGATTTCCGAGTT 1373
||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1308 TGTACAAGAGAAGTTGATGCTCGAGAAATGCCATGACCTTTTGAGAATGATTTCCGAGTT 1367
Query 1374 AGAGATGCAGGAGAGGAGCTTGAAGTGTTGCTTCCTGATTCAAAACAAACAGACTTTCGA 1433
|||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||
Sbjct 1368 AGAGATGCAGGAGAGGAGCTTGAAATGCTGCTTCCTGATTCAACACAAACAGACTTTCGA 1427
Query 1434 TATAAAACTTC 1444
|| ||| ||||
Sbjct 1428 TACAAATCTTC 1438
> AT2G20616.1 | Symbols: | Family of unknown function (DUF566)
| chr2:8887116-8888305 REVERSE LENGTH=636
Length=636
Score = 407 bits (220), Expect = 2e-112
Identities = 254/269 (94%), Gaps = 7/269 (3%)
Strand=Plus/Plus
Query 1 ATGAAGAGCTGTGAGCAT---CTACTCAAACCAAGAAGAGGAAAGTCCCGCGA-GTTAAG 56
|||||||||||||||||| ||||||||| |||||||||||||||||||||| ||| ||
Sbjct 1 ATGAAGAGCTGTGAGCATGAACTACTCAAAACAAGAAGAGGAAAGTCCCGCGAGGTT-AG 59
Query 57 TTCACGTTTTCTCTCCTCTCCGTCTGCATTTTCTTCTCCTAACCGCAGAAACTCCACTTC 116
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 60 TTCACGTTTTCTCTCCTCTCCGTCTGCATCTTCTTCTCCTAACCGCAGAAACTCCACTTC 119
Query 117 TAATTCATCTACCAAGAGAGATGATCAGAACAACAACGGTCTGAAAGTTCATCTCGGCCT 176
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 120 TAGTTCATCTACCAAGAGAGATGATCAGAACAACAACGGTCTGAAAGTTCATCTTGGCCT 179
Query 177 GAAAAAGCATGATAGGATGTCAGATGGCACACGGGTTTGTTTCGGGTTACCAAACCAAAG 236
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 GAAAAAGCATGATAGGATGTCAGATGGAACACGGGTTTGTTTCGGGTTACCAAACCAAAG 239
Query 237 TAGCATAGAAGTTGACTCAAAAGAAAATC 265
|||| ||||| ||||| ||| |||||||
Sbjct 240 TAGCTTAGAATTTGACACAA--GAAAATC 266
Score = 244 bits (132), Expect = 1e-63
Identities = 174/193 (90%), Gaps = 8/193 (4%)
Strand=Plus/Plus
Query 988 TTGGTTCTGCAAGAGAGAATCAAACTGCAGAAGAAAAACCTGGAGATGAAGCTGATTTAT 1047
|||||||||||||||| |||||||||||||||||||||||||||||||||| | | ||||
Sbjct 277 TTGGTTCTGCAAGAGAAAATCAAACTGCAGAAGAAAAACCTGGAGATGAAGATCAATTAT 336
Query 1048 GTGCTTCTTTCTCAAGTT-AAGCATCTTGAAGCTTGGGAGGACATGGAAAGACAACACCT 1106
|||||||||||||||||| ||||| | |||||||||||||||||| |||||| ||
Sbjct 337 GTGCTTCTTTCTCAAGTTAAAGCA---T----CTTGGGAGGACATGGAAATACAACAACT 389
Query 1107 TTCATCTCTATCCATGACCAGAGATTCCCTGCATTCTGTTCTTTCTAGGCTTCCCCTCAA 1166
|||||||| |||||| |||||||||||||||||||||||||||| | ||||||||||||
Sbjct 390 ATCATCTCTGTCCATGGCCAGAGATTCCCTGCATTCTGTTCTTTCCATGCTTCCCCTCAA 449
Query 1167 AGAAGGTGCAAAG 1179
|||||||||||||
Sbjct 450 AGAAGGTGCAAAG 462
Score = 209 bits (113), Expect = 5e-53
Identities = 156/176 (89%), Gaps = 6/176 (3%)
Strand=Plus/Plus
Query 1269 GATGGAGAGTATTGTTCCACTTGCTTCCCAACTAGCGGAAGTGGCCACACAAGAGAAACT 1328
||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||| ||
Sbjct 462 GATGGAGGGTATTGTTCCACTTGCTTCCCTACTAGCGGAAGTGGCTGCACAAGAGAAGCT 521
Query 1329 GATGCTGGAGCAATGCCATGACCTTTTGAGAATGATTTCCGAGTTAGAGATGCAGGAGAG 1388
||||| | | | |||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 522 GATGC---AAC-CT--CATGACTTTTTGAGAATGATCTCCGAGTTAGAGATGCAGGAGAG 575
Query 1389 GAGCTTGAAGTGTTGCTTCCTGATTCAAAACAAACAGACTTTCGATATAAAACTTC 1444
|||||||||||| |||||| |||||||| |||||||||||||||||| ||| ||||
Sbjct 576 GAGCTTGAAGTGCTGCTTCTTGATTCAACACAAACAGACTTTCGATACAAATCTTC 631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71234573355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5