BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480923
Length=796
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20825.1 | Symbols: ULT2 | Developmental regulator, ULTRAPET... 1219 0.0
> AT2G20825.1 | Symbols: ULT2 | Developmental regulator, ULTRAPETALA
| chr2:8965756-8966867 REVERSE LENGTH=848
Length=848
Score = 1219 bits (660), Expect = 0.0
Identities = 753/797 (94%), Gaps = 9/797 (1%)
Strand=Plus/Plus
Query 1 GTCCCGATCGGAGATGGAGAGAGAATGTGGGTCCAAGGAACTGTTCAGCAAAGAGGAGCT 60
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 60 GTCCCGATCGGAGATGGAGAGAGAATGTGGGTCGAAGGAGTTGTTCAGCAAAGAGGAGCT 119
Query 61 GCAAGAAATAAGTGGAGTCCATGTGGGAGACGATTACGTCGAGGTGATGTGTGGCTGCAC 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 120 ACAAGAAATAAGTGGAGTCCATGTGGGAGACGATTACGTCGAGGTCATGTGTGGCTGCAC 179
Query 121 CAGCCACCGTTACGGAGACGCCATTGCGAGGCTTAAGATATTTTCAGATGGAGAACTTCA 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 180 CAGCCACCGTTACGGAGACGCCGTTGCGAGGCTTAAGATATTTTCAGATGGAGAACTTCA 239
Query 181 AATCACCTGCCAATGCACTCCCGCTTGCCTCGATGACAAGTTAACGCCTGCTGCCTTCGA 240
||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||
Sbjct 240 AATCACCTGCCAATGCACTCCTGCTTGTCTCGAAGACAAGTTGACGCCTGCTGCCTTCGA 299
Query 241 GAAGCATTCTGAGAGAGAAACCTCTAGAAACTGGAGGAACAATGTGTGGGTGTTTATCGA 300
||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 300 GAAGCATTCTGAGAGAGAAACCTCTAGAAACTGGAGGAACAATGTTTGGGTGTTCATTGA 359
Query 301 GGGAGACAAGGTTCCACTTTCAAA-ATCAGTGTTGCTCAGATACTACAACAAAGCATTGA 359
|||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||
Sbjct 360 AGGAGACAAGGTTCCGCTTTCAAAGA-CAGTGTTGCTCAGATACTACAACAAAGCATTGA 418
Query 360 AGAACTCTAACGTATCGAAAGTCATTCATCGGGATGAGTTTGTTGGGTGCAGCAAATGCG 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 419 AGAACTCTAACGTATCGAAAGTCATTCATCGGGATGAGTTTGTTGGGTGCAGCACATGCG 478
Query 420 GGAAGGAGAGGAGGTTCAGGTTGAGGAGCAGAGGTGAATGCCGGATGCACCATGATGCAA 479
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 479 GGAAGGAGAGGAGGTTCAGATTGAGGAGCAGAGGGGAATGCCGGATGCACCATGATGCAA 538
Query 480 TAGCTGAGCCTAATTGGAAGTGTTGTGATTATCCATTCAACAAGATAACATGCGAGGAGG 539
| ||||||||||||||||||||||| ||||| |||| | |||||||||||||||||||||
Sbjct 539 TTGCTGAGCCTAATTGGAAGTGTTGCGATTACCCATACGACAAGATAACATGCGAGGAGG 598
Query 540 AGGAAGAAAGAGGGAGCAGGAAAGTGTTCAGAGGGTGCACTCGCTCTCCGTCTTGCAAAG 599
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 599 AGGAAGAAAGAGGGAGCAGGAAAGTGTTCAGAGGTTGCACTCGCTCACCGTCCTGCAAAG 658
Query 600 GCTGCACGTCTTGCGTCTGCTTTGGTTGCAAGCTCTGCCGTTTCTCTGATTGTAACTGCC 659
||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 659 GCTGCACTTCTTGCGTCTGCTTCGGCTGCAAGCTCTGCCGTTTCTCTGATTGTAACTGCC 718
Query 660 AGACTTGCCTCGACTTCACCACCAACGCCCAACCCATTTGACTTCATCTCTCTAACTTCT 719
||||||||||||| ||||||||||| ||| ||||||||||||||||| |||||||||| |
Sbjct 719 AGACTTGCCTCGATTTCACCACCAATGCCAAACCCATTTGACTTCATTTCTCTAACTTAT 778
Query 720 TTAATTCTTCTGCAAAACCTTGTAATGTATGGTGGATGCTCTGCATTTTCTTTAATCAGT 779
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 779 TTAATTCTTCTGCAAAAACTTGTAATGTATG-------CTCTGCATTTTCTTTAATCAGT 831
Query 780 AGCTTGTTACACCTGTT 796
|||||||||||||||||
Sbjct 832 AGCTTGTTACACCTGTT 848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38730527337
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5