BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480926

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G20835.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   508    1e-143


> AT2G20835.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G15534.1); 
Has 66 Blast hits to 66 proteins in 12 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:8970886-8971303 
REVERSE LENGTH=418
Length=418

 Score =  508 bits (275),  Expect = 1e-143
 Identities = 346/377 (92%), Gaps = 18/377 (5%)
 Strand=Plus/Plus

Query  1    AAAAACACAACAACAAGATTCAAGAAATGGCCATCTTCTGTTTCCTTGTAGACCAGAGGA  60
            |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct  13   AAAAACACAACAACAACATTCAAGAAATGGCCATCTTCTGTTTCCTTGTAGACCAGAGAA  72

Query  61   AGCAAGTCCAGGGGAGAAAGCCGGCGGCCGGGTTATGCTCAAGATGCGGAGGAGGAGCAG  120
            || |||||| |||||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct  73   AGAAAGTCCGGGGGAGGAAGCCAGCGGCCGGGTTGTGCTCAAGATGCGGAGGAGGAGCAG  132

Query  121  TGGTTGCCGACATGAGAACCTCCACAAGATTCTGTGGGGTCCCTTTTTACCGCAAAGCTT  180
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  133  TTGTTGCCGACATGAGAACCTCCACAAGATTCTGTGGGGTCCCTTTTTACCGCAAAGCTT  192

Query  181  GGAAAGCTATCGTCTGTCATTTCTGCGGTGCTGTGCTCAAATCTTACCACTGAGTCTGAT  240
            |||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||
Sbjct  193  GGAAAGCTATCGTCTGTCATATCTGCGGTGCTGTCCTCAAATCATACCACTGAGTCTGAT  252

Query  241  GAACCAAC---GtttttttGTGTTAATTCATTCGTTTGTTTTTTAATC-AACAAGCTACT  296
            ||||||||   ||||||| || ||||||||||||||| ||||||  || |||||||||||
Sbjct  253  GAACCAACAACGTTTTTT-GTTTTAATTCATTCGTTT-TTTTTT--TCCAACAAGCTACT  308

Query  297  TGCCATTGTATGTCGCTTGATTGCCTACCTTT-GAC-C------CT-AGCTAATGTTTTT  347
            |||||||||||||||||||||||||||| ||| ||| |      || |||||||||||||
Sbjct  309  TGCCATTGTATGTCGCTTGATTGCCTAC-TTTAGACTCTTAAGTCTTAGCTAATGTTTTT  367

Query  348  GTTATTCATTTATCTCT  364
            ||| |||||||||||||
Sbjct  368  GTTTTTCATTTATCTCT  384



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17091034660


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5