BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480928
Length=2737
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20850.1 | Symbols: SRF1 | STRUBBELIG-receptor family 1 | ch... 3179 0.0
> AT2G20850.1 | Symbols: SRF1 | STRUBBELIG-receptor family 1 |
chr2:8975348-8979379 REVERSE LENGTH=2847
Length=2847
Score = 3179 bits (1721), Expect = 0.0
Identities = 2065/2223 (93%), Gaps = 56/2223 (3%)
Strand=Plus/Plus
Query 417 TAATTCTCATCAGTTCCAATCTTGGAGGAGAGCTTGGTG-TGGTTTAAACATGTTTACTT 475
|||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||| |
Sbjct 439 TAATTCTCATCAGTGCCAATCTTGGAGGAGAGCTTGGTGTTGGCTTAAACATGTTTACCT 498
Query 476 CTCTTAAAGCAATGGATTTTAGCAACAATCACATTGGAGGAATGT-TCTCAT-TA-GATA 532
|||||||||||||||||||||||||||||||||||||||||| || || ||| | | |
Sbjct 499 CTCTTAAAGCAATGGATTTTAGCAACAATCACATTGGAGGAA-GTATCCCATCCACG-T- 555
Query 533 AGGGTAATTTGGTCATTTTGTTCAAGAGA-ATGTTTCTTTCTGGTAACAAGTTTACAGGA 591
| | || ||| ||| | ||| | |||||||||| |||||||| |||||||||
Sbjct 556 TGCCT--GTT--TCA--TTG--C-AGA-ACTTGTTTCTTTCAGGTAACAACTTTACAGGA 605
Query 592 ACCATCCCAGAATCTCTTTCCTCCTTAAAATCTTTGTCTGTCATGTCCTTGAACAATAAC 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 ACCATCCCAGAATCTCTTTCCTCCTTAAAATCTTTGTCTGTCATGTCCTTGAACAATAAC 665
Query 652 CTTTTGTCTGGCAAGATACCCGATGTCTTTCAAGACCTTGGCCTTATGATCAATCTAGAT 711
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 666 CTTTTGTCTGGCAAGATACCCGATGTCTTTCAAGACCTTGGCCTTATGATCAATATAGAT 725
Query 712 TTGTCTAGCAACAATCTGAGTGGACCATTGCCTCCTTCCATGCAGAATCTTTCGACTCTT 771
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 726 TTGTCTAGCAACAATCTGAGTGGACCATTACCTCCTTCCATGCAGAATCTTTCGACTCTT 785
Query 772 ACATCCTTGCTTTTGCAGAACAATCATCTTTCAATAGAGCTTGATGTTCTTCAAGATCTT 831
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 786 ACATCCTTGCTTTTGCAGAACAATCATCTTTCAGGAGAGCTTGATGTTCTTCAAGATCTT 845
Query 832 CCCCTCAAGGACTTGAATGTCGAGAACAACCTCTTCAATGGATCTATACCAGAAAAGTTG 891
||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||
Sbjct 846 CCCCTCAAGGACTTGAACGTTGAGAACAACCTCTTCAATGGACCTATACCAGAAAAGTTG 905
Query 892 TTGGGTATACCAAATTTCATAAAAGGCGGTAACCTGTTTAACGTCACTATTGCTCCATCG 951
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 906 TTGAGTATACCAAATTTCATAAAAGGCGGTAATCTGTTTAACGTCACTATTGCTCCATCG 965
Query 952 CCTTCACCTGAAACACCTCCAAGTCCAACATCACCTACGCGGCCGTTTTTTGGACCACCA 1011
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 966 CCTTCACCTGAAACACCTCCAAGTCCAACATCACCTAAGCGGCCATTTTTTGGACCACCA 1025
Query 1012 TCTACCAATGCATCAACTGGTCATGGTCAGGCACATGTGAGATCACCCCCTTCTGATCA- 1070
||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1026 TCTCCCAATGCATCAGCTGGTCATGGTCAGGCACACGTGAGATCACCCCCTTCTGATCAT 1085
Query 1071 C-CC-ATCTCGACCTACTCCTCAAGGGGAAA-AAGATTCATTTACCAGGAAAAGAATCAT 1127
| || ||| ||||| |||||||||||| ||| |||| ||||||||||| |||||||| ||
Sbjct 1086 CACCCATCCCGACCAACTCCTCAAGGG-AAAGAAGACTCATTTACCAGTAAAAGAATTAT 1144
Query 1128 TTGGATATCCATTCTTGGGGCCTTTTCATTTTTGTTTTTGGCCTTGGTATGCCTACTTTG 1187
||||||||||||||||||||| ||||||||| || |||||||||||||||| ||||||||
Sbjct 1145 TTGGATATCCATTCTTGGGGCTTTTTCATTTGTGGTTTTGGCCTTGGTATGTCTACTTTG 1204
Query 1188 TGGGAGGAAATGTCTCAGAAGAAGAGAAGACAGTGAACAACTATCCAAACCGCACCTAAC 1247
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1205 TGGGAGAAAATGTCTCAGAAAAAGAGAAGACAGTGAACAACTATCCAAACCGCACCTAAC 1264
Query 1248 TAGTGAATATGGGAGGGCAAGGGAGGGTTCTCGCTCCAATGCTTCTATGCTTCCTCCATC 1307
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1265 TAGTGAATACGGGAGGGCAAGGGAGGGTTCTCGCTCAAATGCTTCTATGCTTCCTCCATC 1324
Query 1308 CGATACATTCAATAAAGACAAGGAGGCTAAACCAAAAGAGAGAATAGGGGGTGCTTCGAA 1367
| ||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||
Sbjct 1325 CAATACATTCAATAAAGACAAGGAGGCTAGACCAAAAGAGAGAGTAGGAGGTGCTTCGAA 1384
Query 1368 GCTGCA-GAGTGGGGCAGAAAGAAGCGTAGGAAGTGAATCGAAGCAGGAGAGTCATGAGA 1426
|||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1385 GCTGCATG-GTGGGGCAGAAAGAAGCGTAGGAAGTGAATCAAAGCAGGAGAGTCATGAGA 1443
Query 1427 GAGACATGAATGGCAATGCTATGGATTTGATGTATCCCTCATCAATTCCACCTATCAAAA 1486
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1444 TAGACATGAATGGCAATGCTATGGATTTGATGCATCCCTCATCAATTCCACCTATCAAAA 1503
Query 1487 GGGTCATCGCAAAGGCGACTGTACCTGCTGAAGCATCTCTAAAGAAGC-CATCCAGTAAA 1545
||||||||||||||||||||| ||||||||||||||||||||| ||| || ||||||||
Sbjct 1504 GGGTCATCGCAAAGGCGACTGAACCTGCTGAAGCATCTCTAAA-AAGGACAACCAGTAAA 1562
Query 1546 TCCTTTGGTCCCTTGACATCCGTGAAGCACTTCACGGTTGCATCTCTACAACAACAC--- 1602
||| ||||||||||||| | |||||||| |||||||| ||||||||||||||||||
Sbjct 1563 TCCCATGGTCCCTTGACAGCTGTGAAGCATTTCACGGTCGCATCTCTACAACAACACACA 1622
Query 1603 --T--CT---CCCAGGAAAACCTTATTGGAACGGGCATGCTTGGGAGTGTCTACAGGGCA 1655
| || |||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1623 AATAGCTTTTCCCACGAAAACCTTATTGGAACAGGCATGCTTGGGAGTGTCTACAGGGCA 1682
Query 1656 GAGTTTCCAGCT-------T-TTGGCTGTGATGAAGTTGGATAAGAAGTCTTCCAATCAT 1707
||| |||||| | | || ||||||| ||||||||||||||||||| ||||||||
Sbjct 1683 GAGCTTCCAGGTGGAAAGCTCTTCGCTGTGAGGAAGTTGGATAAGAAGTCTCCCAATCAT 1742
Query 1708 -ACAGAACAAGGGAAATTTGTGGAGCTAGTGAATAATATAGATAGAATCCGACAAGCCAA 1766
| |||| |||| |||||| |||||||||||||||||||||||||||| || || |||||
Sbjct 1743 GA-AGAAGAAGGCAAATTTTTGGAGCTAGTGAATAATATAGATAGAATACGGCATGCCAA 1801
Query 1767 TATTGTCCAACTCGTGGGTTTCTGTTCTGAGCACAGTCAGAGGCTTCTGATCCATGAGTA 1826
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1802 TATTGTCCAACTCGTGGGTTTCTGTTCTGAGCACAGTCAAAGGCTTCTGATCCATGAGTA 1861
Query 1827 TTGTAGGAACGGTACTCTGCACGATTTGCTGCATACTAATGACAGGTT-AATGATTAAAC 1885
||||||||||||||| ||||||||||||||||||| | |||||||||| || |||| |||
Sbjct 1862 TTGTAGGAACGGTACACTGCACGATTTGCTGCATATTGATGACAGGTTGAA-GATTGAAC 1920
Query 1886 TATCATGGAATATCCGTGTTAGGATGGCACTAGAAGCCGCAAAAGCTCTGGAGTATCTGC 1945
||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1921 TATCATGGAATGTCCGTGTTAGGATTGCACTAGAAGCTGCAAAAGCTCTGGAGTATCTGC 1980
Query 1946 ATGAGATCTGTGATCCACCTAGTATTCACCGAAATTTCAAGTCTGCAAATATTCTCCTTG 2005
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1981 ATGAGATCTGTGATCCACCTAGTATCCACCGAAATTTCAAGTCTGCAAATATTCTCCTTG 2040
Query 2006 ATGACGATCTGAGGGTGCATGTCTCAGACTGTGGCTTGGCTTCC-CTAATCTCCTCAGGT 2064
|||||||| | |||||||||||||||||||| ||||||||| || |||||||||||||||
Sbjct 2041 ATGACGATATAAGGGTGCATGTCTCAGACTGCGGCTTGGCT-CCTCTAATCTCCTCAGGT 2099
Query 2065 GCCGTTAGTCAGTTATCGGGTCAACTCTTAGCGGCCTACGGATATGGAGCTCCAGAGTTT 2124
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2100 GCCGTAAGTCAGTTATCGGGTCAACTCTTAGCGGCCTACGGATATGGAGCTCCAGAGTTT 2159
Query 2125 GAATATGGGATCTATACAATGAAATGTGATGTCTACAGTTTTAGAGTGGTTATGTTAGAA 2184
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 2160 GAATATGGGATCTATACAATGAAATGTGATGTCTACAGTTTTGGAGTAGTTATGTTAGAA 2219
Query 2185 CTCTTGACAGGCCGCAAGTCATATGACAAGAAACAGGATAGAGGAGAGCAGTTTCTGGTG 2244
||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 2220 CTCTTGACAGGTCGCAAGTCATATGACAAGAAACGGGATAGAGGAGAGCAATTTCTGGTG 2279
Query 2245 AGATGGGCAATCCCGCAGCTTCACGACATTGATGCATTAGCGAAGATGGTCGACCCATCT 2304
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2280 AGATGGGCAATCCCACAGCTTCACGACATTGATGCATTAGCGAAGATGGTCGACCCATCC 2339
Query 2305 CTCAAGGGTGATTATCCTGCCAAGTCGCTGTCACATTTTGCTGATGTGATATCACGTTGT 2364
||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2340 CTCAAGGGTGACTATCCAGCCAAGTCGCTGTCACACTTTGCTGATGTGATATCACGTTGT 2399
Query 2365 GTTCAGTCGGAACCAGAGTTCAGGCCACTAATGTCAGAAGTGGTTCAAGACCTCTCAGAC 2424
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2400 GTTCAGTCGGAACCAGAGTACAGGCCACTAATGTCAGAAGTGGTTCAAGACCTCTCAGAC 2459
Query 2425 ATGATCCAGAGAGAACATCGGAGAAATGACTCAAATGGGGATAATCAGTATGCAGGAAGA 2484
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 2460 ATGATCCAGAGAGAACATCGGAGAAATGACTCAAATGGGGATAATCAGTATACGGGAAGA 2519
Query 2485 AGATAGTTTAAGGAGACTGTCTCTTATACAAAACTAGT---ATTAT-AGTATTGTTTCGA 2540
|||||||||||||||| ||||||||||||||||| ||| ||||| |||||| ||| ||
Sbjct 2520 AGATAGTTTAAGGAGATTGTCTCTTATACAAAACAAGTGGTATTATTAGTATTCTTTAGA 2579
Query 2541 AAGTCGCAACCATTGTTCTTTAACGAAGCCTTGTTTGTATTATTGTATATGTAGACTGTG 2600
|||||| ||||||||||||||||||| |||||| |||||||||| |||||||||| ||||
Sbjct 2580 AAGTCGAAACCATTGTTCTTTAACGA-GCCTTGCTTGTATTATTATATATGTAGAGTGTG 2638
Query 2601 TGA 2603
|||
Sbjct 2639 TGA 2641
Score = 372 bits (201), Expect = 1e-101
Identities = 246/266 (92%), Gaps = 9/266 (3%)
Strand=Plus/Plus
Query 154 GAGAAGACAACAACATCTGCTTCCTGGGTTTTCTTGT-CTTTTTCCTTATCT-CCTATCT 211
||| ||||||||||||||||||||||||||||| | | |||| |||||||| ||| ||
Sbjct 218 GAG-AGACAACAACATCTGCTTCCTGGGTTTTC-TCTCCTTTGCCCTTATCTCCCT-TCC 274
Query 212 CTCCTTGTCACTTGCTCTTACCAATCCTGACGATCGATGTTGCGGCTATTAACAGCCTCT 271
|||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||
Sbjct 275 CTCCTTGTCACTTGCTCTTACCAATCCT---GA-CGATGTTGCGGCTATTAACAGTCTCT 330
Query 272 TCCTTGCACTGGAGTCTCCTCTTCTCCCTGGTTGGGTTGCATCTAGAGGTGATCCATGTG 331
|||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||
Sbjct 331 TCCTTGCACTGGAGTCTCCTCTTCTCCCCGGTTGGGTTGCATCTGGAGGTGACCCATGTG 390
Query 332 GCGAGAGCTGGCAAGGTGTTTTATGTAATGCTTCCCAAGTAGAAACCATAATTCTCATCA 391
| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 391 GTGAGAGCTGGCAAGGTGTTCTATGTAATGCTTCCCAAGTAGAAACAATAATTCTCATCA 450
Query 392 GTGCCAATCTTGGAGGAGAGCTTGGT 417
||||||||||||||||||||||||||
Sbjct 451 GTGCCAATCTTGGAGGAGAGCTTGGT 476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 135952415530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5