BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480938
Length=1738
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20900.1 | Symbols: DGK5, ATDGK5 | diacylglycerol kinase 5 |... 2416 0.0
> AT2G20900.1 | Symbols: DGK5, ATDGK5 | diacylglycerol kinase 5
| chr2:8989275-8993114 REVERSE LENGTH=1860
Length=1860
Score = 2416 bits (1308), Expect = 0.0
Identities = 1508/1599 (94%), Gaps = 36/1599 (2%)
Strand=Plus/Plus
Query 25 TAATTTTGGATCAAACAATGCAAATGCAGCGCATGACTGAGTCCGCGTCAGAAAATGGGG 84
|||||||||||||||||||||||| ||||| |||||| ||||||||||||||||| ||||
Sbjct 49 TAATTTTGGATCAAACAATGCAAACGCAGCACATGACCGAGTCCGCGTCAGAAAAAGGGG 108
Query 85 CCAACTGCTCCGTAGCCGCCAAGAATCTCG-A-A----GA-TCC-C--GAT--TC--C-T 129
|||||||||||||||||||||||||||||| | | || ||| | ||| || | |
Sbjct 109 CCAACTGCTCCGTAGCCGCCAAGAATCTCGCAGATCCCGATTCCTCTTGATCATCGTCTT 168
Query 130 -TTCT--C----TTGAT---C-ATCAATGGATAAATACAATAGTGTATCAGATTTTCTCA 178
|||| | ||| | | | ||||||| |||||||| ||| |||||||||||||||
Sbjct 169 CTTCTACCAAAATTGTTGCGCGA-CAATGGAGAAATACAACAGTTTATCAGATTTTCTCA 227
Query 179 AGGAGTTCTACATCCCTACGTACGTCCTGTCGCCgg----ag--gaggaggaggaggagg 232
|||||||||||||||||||||||||||| ||| ||| || ||||||||||||||||
Sbjct 228 AGGAGTTCTACATCCCTACGTACGTCCTCTCGGCGGAAACAGAAGAGGAGGAGGAGGAGG 287
Query 233 -CTGT--TCCTCCACCTGCGAGCCCCGTCCTTGTCTTCATCAACTCCAAAAGCGGTGGTC 289
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 AGAGTCGTCCTACACCTGCGAGCCCCGTCCTTGTCTTCATCAACTCCAAAAGCGGTGGTC 347
Query 290 AGTTGGGTGGCGAACTCATTCTCACCTACCGATCTCTTCTCAATCACAGTCAGGTCTTTG 349
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 348 AGTTGGGTGGCGAACTCATTCTCACCTACCGATCTCTTCTCAATCACAATCAGGTCTTTG 407
Query 350 ATCTCGACCAAGAGACTCCCGATAAAGTGCTCCGCAGAATCTATCTTAACCTCGAGAGGC 409
|||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 408 ATCTCGACCAGGAGACTCCAGATAAAGTGCTCCGCAGAATCTATCTTAACCTGGAGAGGC 467
Query 410 TCAAAGATGACGATTTCGCTCGTCAGATTCGGGAGAAATTAAAAATCATTGTTGCAGGAG 469
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 TCAAAGATGATGATTTCGCTCGTCAGATTCGGGAGAAATTAAAAATCATTGTTGCAGGAG 527
Query 470 GTGATGGCACTGCTGGGTGGCTCCTTGGAGTTGTATGTGACCTTAAATTATCACATCCTC 529
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 528 GTGATGGCACTGCTGGGTGGCTCCTTGGAGTTGTATGTGACCTTAAATTGTCACATCCTC 587
Query 530 CTCCAATTGCCACTGTACCTTTGGGTACTGGAAATAACCTTCCCTTTGCTTTTGGATGGG 589
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 588 CTCCAATTGCCACTGTACCTTTGGGTACAGGAAACAACCTTCCCTTTGCTTTTGGATGGG 647
Query 590 GAAAGAAAAATCCAGGAACAGATAGAACTGCAGTGGAGTTGTTTTTGGATCAAGTGTTGA 649
||||||| ||||||||||||||||| ||||||||||||| ||||||||| ||||||||||
Sbjct 648 GAAAGAAGAATCCAGGAACAGATAGGACTGCAGTGGAGTCGTTTTTGGAACAAGTGTTGA 707
Query 650 AGGCAAAAGAGATGAAGATTGACAATTGGCACATACTTATGAGGATGAAAACTCCTAAAG 709
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 708 AGGCAAAAGTGATGAAGATTGACAATTGGCACATACTTATGAGGATGAAAACTCCCAAAG 767
Query 710 AAGGTGGTTCTTGTGATCCTGTTGCTCCTCTTGAATTACCACATTCTCTACATGCATTTC 769
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 768 AAGGTGGTTCTTGTGATCCTGTTGCTCCTCTTGAGTTACCACATTCTCTACATGCATTTC 827
Query 770 ACCGTGTTTCTCCAACAGATGAACTAAACAAGGAAGGCTGCCACACATTTCGAGGGGGGT 829
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 828 ACCGTGTTTCTCCAACTGATGAACTAAACAAGGAAGGCTGCCACACTTTTCGAGGAGGGT 887
Query 830 TCTGGAATTACTTTAGCCTCGGAATGGATGCTCAGATTTCTTATGCGTTTCATTCTGAGA 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 TCTGGAATTACTTTAGCCTCGGAATGGATGCTCAGATTTCTTATGCGTTTCATTCTGAGA 947
Query 890 GGAAGCTTCACCCTGAAAAATTTAAGAATCAGCTGGTTAATCAGAGTACGTATGTAAAGC 949
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 948 GGAAGCTTCACCCTGAAAAGTTTAAGAATCAGCTGGTTAATCAGAGTACGTATGTAAAGC 1007
Query 950 TTGGCTGCACGCAAGGATGGTTTTGTGCCTCTCTTTTCCACCCTGCTTCACGGAATATAG 1009
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 TTGGTTGCACGCAAGGATGGTTTTGTGCCTCTCTTTTCCACCCTGCTTCACGGAATATAG 1067
Query 1010 CTCAGCTTGCCAAGGTTAAGATTGCAACTAGAAATGGCCAGTGGCACGACCTCCACATAC 1069
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1068 CTCAGCTTGCCAAGGTTAAGATTGCAACTAGAAATGGCCAGTGGCAGGACCTCCACATAC 1127
Query 1070 CTCATAGCATCAGGTCCATTGTATGTCTGAATCTGCCCAGCTTTTCTGGAGGTTTAAATC 1129
| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1128 CACATAGCATCAGGTCCATTGTATGTCTGAATCTGCCCAGCTTTTCGGGAGGATTAAATC 1187
Query 1130 CTTGGGGCACACCAAATCCCAGGAAACAACGCGATAGAGGCTTGACTCCCCCGTTTGTAG 1189
||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct 1188 CTTGGGGCACACCAAATCCCAGGAAACAACGTGATAGAGGCTTGACTCCACCATTTGTAG 1247
Query 1190 ATGATGGCCTCATTGAGGTTGTTGGGTTTAGAAATGCTTGGCATGGTCTTGTTCTGCTCG 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 ATGATGGCCTCATTGAGGTTGTTGGGTTTAGAAATGCTTGGCATGGTCTTGTTCTGCTCG 1307
Query 1250 CTCCAAATGGACATGGGACACGACTTGCCCAGGCAAATCGCATTCGCTTCGAATTTCACA 1309
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1308 CTCCCAATGGACATGGGACACGACTTGCCCAGGCAAATCGTATTCGCTTCGAATTTCACA 1367
Query 1310 AAGGTGCAACTGACCATACATTCATGAGGATGGATGGGGAGCCCTGGAAACAGCCACTGC 1369
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 AAGGTGCAACCGACCATACATTCATGAGGATGGATGGGGAGCCCTGGAAACAGCCACTGC 1427
Query 1370 CACTGGATGATGAAACTGTGATGGTAGAGATTTCACATCTTGGCCAAGTGAACATGCTTG 1429
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1428 CACTGGATGATGAAACTGTGATGGTAGAGATTTCACACCTTGGCCAAGTGAACATGCTTG 1487
Query 1430 CAACTCATGACTGCCGGTCCAGAAGCATGTTTGACCCATCAACACCACGCCATTATGATG 1489
||||||||||||||||||||||||| |||||||||| |||||||| |||||| | ||||
Sbjct 1488 CAACTCATGACTGCCGGTCCAGAAGTGTGTTTGACCCTTCAACACCCCGCCATCAGGATG 1547
Query 1490 CTGCAGAAGAGTATGATGATAATGAAGACGAATCAATGGCTGAAGGCGAGGAATTTAGAA 1549
||||||||| |||||||||||||||||||| ||| ||||||||||||| ||||||||||
Sbjct 1548 GTGCAGAAGATTATGATGATAATGAAGACGACTCAGTGGCTGAAGGCGAAGAATTTAGAA 1607
Query 1550 AGTTTGGTGCTGCGGATACCTTCAAGATTCCTGATGAGG 1588
|||||||||||||||||||||||||||||||||||||||
Sbjct 1608 AGTTTGGTGCTGCGGATACCTTCAAGATTCCTGATGAGG 1646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85943333040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5