BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480940
Length=381
Score E
Sequences producing significant alignments: (Bits) Value
AT4G06495.1 | Symbols: | transposable element gene | chr4:3133... 196 1e-49
AT4G05300.1 | Symbols: | transposable element gene | chr4:2705... 195 4e-49
AT2G01029.1 | Symbols: | transposable element gene | chr2:2846... 191 5e-48
AT2G06860.1 | Symbols: | transposable element gene | chr2:2766... 191 5e-48
AT2G21460.1 | Symbols: | transposable element gene | chr2:9188... 189 2e-47
AT1G41797.1 | Symbols: | transposable element gene | chr1:1556... 189 2e-47
AT4G04655.1 | Symbols: | transposable element gene | chr4:2357... 183 8e-46
AT4G06496.1 | Symbols: | transposable element gene | chr4:3136... 180 1e-44
AT4G00140.1 | Symbols: EDA34 | Calcium-binding EF-hand family p... 172 2e-42
AT5G29060.2 | Symbols: | transposable element gene | chr5:1112... 167 8e-41
AT3G30816.1 | Symbols: | transposable element gene | chr3:1251... 165 3e-40
AT2G12540.1 | Symbols: | transposable element gene | chr2:5108... 163 1e-39
AT4G08760.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 147 1e-34
AT2G12385.1 | Symbols: | transposable element gene | chr2:4991... 143 1e-33
AT3G47240.1 | Symbols: | transposable element gene | chr3:1739... 135 2e-31
AT2G12530.1 | Symbols: | transposable element gene | chr2:5106... 128 4e-29
AT2G01040.1 | Symbols: | transposable element gene | chr2:6543... 76.8 1e-13
AT5G32540.1 | Symbols: | transposable element gene | chr5:1219... 71.3 6e-12
AT3G33189.1 | Symbols: | transposable element gene | chr3:1402... 67.6 8e-11
AT5G28110.1 | Symbols: | transposable element gene | chr5:1010... 65.8 3e-10
AT5G28120.1 | Symbols: | transposable element gene | chr5:1011... 65.8 3e-10
AT4G08095.1 | Symbols: | transposable element gene | chr4:4998... 63.9 1e-09
> AT4G06495.1 | Symbols: | transposable element gene | chr4:3133802-3135016
FORWARD LENGTH=1215
Length=1215
Score = 196 bits (106), Expect = 1e-49
Identities = 191/229 (83%), Gaps = 17/229 (7%)
Strand=Plus/Plus
Query 39 GGATAGACCgatcgtcggacggatcggatcggacagaccgatcgtcggacggatca-gac 97
||| ||||||||||||||||||||||||| |||||| |||||||||||||||| || | |
Sbjct 694 GGACAGACCGATCGTCGGACGGATCGGATGGGACAGGCCGATCGTCGGACGGAACAGGTC 753
Query 98 agaccgatcgtcgga-cggatcAGATAGACCGATCGCGTATAAGGGAAAAGTGTTCGAAG 156
||| || | | || | | |||| || ||| | | || | ||||||||||||| |
Sbjct 754 GGACAGA-C--C-GATC-G-TCAG--AG-GGGAT-G-G-AT-CGAGAAAAGTGTTCGAGG 800
Query 157 AAGCACGAGGATAAGTGCAACCGAACACACCCAAGGGTCGCCCATGGATGCAATCTCACC 216
|||||| |||||||||||| ||||||| |||||||||||||||||||||||||||| |||
Sbjct 801 AAGCACAAGGATAAGTGCATCCGAACAAACCCAAGGGTCGCCCATGGATGCAATCTTACC 860
Query 217 GGTAAAGGGAGTAAGTACCGAGAATGGGTAAGTGA-CGTGGTTCACCAT 264
||||||||||| ||| ||| |||||||||||| || ||| ||||||||
Sbjct 861 GGTAAAGGGAGAAAGCACCAAGAATGGGTAAG-GAACGTTATTCACCAT 908
Score = 76.8 bits (41), Expect = 1e-13
Identities = 48/51 (94%), Gaps = 1/51 (2%)
Strand=Plus/Plus
Query 267 ATCGGTAACACC-AATGGTGACTCGACGGATAACCAACGGGAAAGTCCACG 316
|||||||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct 974 ATCGGTAAAACCAAAGGGTGACTCGACGGATAACCAACGGGAAAGTCCACG 1024
> AT4G05300.1 | Symbols: | transposable element gene | chr4:2705670-2708158
FORWARD LENGTH=1164
Length=1164
Score = 195 bits (105), Expect = 4e-49
Identities = 246/310 (79%), Gaps = 25/310 (8%)
Strand=Plus/Plus
Query 14 GACGGAT-GGAT-GAGTCAGATTGGAT-GGA-TAGACCgatcgtcggacggatcggatcg 69
||||||| |||| | | |||| |||| ||| | ||| ||||||||||||| || ||| |
Sbjct 785 GACGGATCGGATCG-GCCAGA-CGGATCGGACT-GACTGATCGTCGGACGGGTCAGATGG 841
Query 70 gacagaccgatcgtcggacggatc-agacagaccgatcgtcggacggatcAGATAGACCG 128
||||| ||||||||| ||| || | ||| ||| || | | || ||| ||| | |
Sbjct 842 GACAGGCCGATCGTCTGACAGAACGGGACGGACAGA-C--C-GA-TCATCGGAT-G--GG 893
Query 129 ATCGCGTATAAGGGAAAAGTGTTCGAAGAAGCACGAGGATAAGTGCAACCGAACACACCC 188
|| | | || | ||||||||||||| ||||||| |||||||||||| |||| |||||||
Sbjct 894 AT-G-G-AT-CGAGAAAAGTGTTCGAGGAAGCACAAGGATAAGTGCATCCGAGCACACCC 949
Query 189 AAGGGTCGCCCATGGATGCAATCTCACCGGTAAAGGGAGTAAGTACCGAGAATGGGTAAG 248
|||||||||||||||||||||||| |||||||||||||| ||| ||| ||||||| | |
Sbjct 950 AAGGGTCGCCCATGGATGCAATCTTACCGGTAAAGGGAGAAAGCACCAAGAATGGCCATG 1009
Query 249 -TGACGTGGTTCACCATGAATCGGTAACACCAATGG-TGACTCGACGGATAACCAACGGG 306
||| | ||| | || ||||||| ||||| || |||||||||||||||||||||||
Sbjct 1010 GTGAAACCGATCAG-A-GA-TCGGTAAGACCAAAGGGTGACTCGACGGATAACCAACGGG 1066
Query 307 AAAGTCCACG 316
|||||| |||
Sbjct 1067 AAAGTCTACG 1076
> AT2G01029.1 | Symbols: | transposable element gene | chr2:28465-38652
FORWARD LENGTH=10188
Length=10188
Score = 191 bits (103), Expect = 5e-48
Identities = 201/244 (82%), Gaps = 24/244 (10%)
Strand=Plus/Plus
Query 43 AGACCgatc-g-tcggacggatcggatcggacagaccgatcgtcggacggatc--a---g 95
|||| |||| | |||| | || |||||||||||||||||||||||||||| || | |
Sbjct 3787 AGACGGATCGGATCGGCCAGA-CGGATCGGACAGACCGATCGTCGGACGGGTCAGATGGG 3845
Query 96 acagaccgatcg--t--cgg-acggatcAGATAGACCGATCG-CGTAT-A-A--G---G- 141
|||| ||||||| | ||| |||| || || ||||| |||| || || | | | |
Sbjct 3846 ACAGGCCGATCGTCTGACGGAACGGGTCGGACAGACCAATCGTCGGATGAGATGGATCGA 3905
Query 142 GAAAAGTGTTCGAAGAAGCACGAGGATAAGTGCAACCGAACACACCCAAGGGTCGCCCAT 201
||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 3906 GAAAAGTGTTCGAGGAAGCACAAGGATAAGTGCATCCGAACACACCCAAGGGTCGCCCAT 3965
Query 202 GGATGCAATCTCACCGGTAAAGGGAGTAAGTACCGAGAATGGGTAAGTGA-CGTGGTTCA 260
||||||||||| |||| ||||||||| ||| ||| |||||||||||| || |||| ||||
Sbjct 3966 GGATGCAATCTTACCGATAAAGGGAGAAAGCACCAAGAATGGGTAAG-GAACGTGATTCA 4024
Query 261 CCAT 264
||||
Sbjct 4025 CCAT 4028
Score = 185 bits (100), Expect = 2e-46
Identities = 201/245 (82%), Gaps = 26/245 (11%)
Strand=Plus/Plus
Query 43 AGACCgatc-g-tcggacggatcggatcggacagaccgatcgtcggacggatc--a---g 95
|||| |||| | |||| | || |||||||||||||||||||||||||||| || | |
Sbjct 6721 AGACGGATCGGATCGGCCAGA-CGGATCGGACAGACCGATCGTCGGACGGGTCAGATGGG 6779
Query 96 acagaccgatcg--t--cgg-acggatcAGATAGACCGATCG-CGTAT-A-A--G---G- 141
|||| ||||||| | ||| |||| || || ||||| |||| || || | | | |
Sbjct 6780 ACAGGCCGATCGTCTGACGGAACGGGTCGGACAGACCAATCGTCGGATGAGATGGATCGA 6839
Query 142 GAAAAGTGTTCGAAGAAGCACGAGGATAAGTGCAACCGAACACACCCAAGGGTCGCCCAT 201
||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 6840 GAAAAGTGTTCGAGGAAGCACAAGGATAAGTGCATCCGAACACACCCAAGGGTCGCCCAT 6899
Query 202 GGATGCAATCTCACCG-GTAAAGGGAGTAAGTACCGAGAATGGGTAAGTGA-CGTGGTTC 259
||||||||||| |||| | |||||||| ||| ||| |||||||||||| || |||| |||
Sbjct 6900 GGATGCAATCTTACCGAG-AAAGGGAGAAAGCACCAAGAATGGGTAAG-GAACGTGATTC 6957
Query 260 ACCAT 264
|||||
Sbjct 6958 ACCAT 6962
Score = 71.3 bits (38), Expect = 6e-12
Identities = 47/51 (92%), Gaps = 1/51 (2%)
Strand=Plus/Plus
Query 267 ATCGGTAACACC-AATGGTGACTCGACGGATAACCAACGGGAAAGTCCACG 316
||| |||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct 4094 ATCAGTAAGACCAAAGGGTGACTCGACGGATAACCAACGGGAAAGTCCACG 4144
Score = 71.3 bits (38), Expect = 6e-12
Identities = 47/51 (92%), Gaps = 1/51 (2%)
Strand=Plus/Plus
Query 267 ATCGGTAACACC-AATGGTGACTCGACGGATAACCAACGGGAAAGTCCACG 316
||| |||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct 7028 ATCAGTAAGACCAAAGGGTGACTCGACGGATAACCAACGGGAAAGTCCACG 7078
> AT2G06860.1 | Symbols: | transposable element gene | chr2:2766356-2772445
FORWARD LENGTH=2817
Length=2817
Score = 191 bits (103), Expect = 5e-48
Identities = 236/295 (80%), Gaps = 29/295 (10%)
Strand=Plus/Plus
Query 31 GATTGGA-TGGATAGACCgatcgtcggacggatcggatcggac-agaccgatcgt----c 84
||||||| ||| | ||||||| ||||||||||||| | |||| || |||||||| |
Sbjct 2425 GATTGGACCGGACAAACCGATCATCGGACGGATCGGGTGGGACAAG-CCGATCGTCAGAC 2483
Query 85 gg-acggatcagacagaccgatcgtcggacggatcAGATAGACCGATCGCGTATAAGGGA 143
|| |||| | |||||||| ||||||| | || | | | ||| | | || ||||
Sbjct 2484 GGAACGGGTTAGACAGACTGATCGTC-G--GG-T--G---G---GAT-G-G-AT-CGGGA 2527
Query 144 AAAGTGTTCGAAGAAGCACGAGGATAAGTGCAACCGAACACACCCAAGGGTCGCCCATGG 203
||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 2528 AAAGTGTTCGAGGAAGCACAAGGATAAGTGCATCCGAACACACCCAAGGGTCGCCCATGG 2587
Query 204 ATGCAATCTCACCGGTAAAGGGAGTAAGTACCGAGAATGGGTAAG-TGACGTGGTTCACC 262
||||||||| |||||||||||||| ||| ||| ||||||| | | ||| | ||
Sbjct 2588 ATGCAATCTTACCGGTAAAGGGAGAAAGCACCAAGAATGGCCATGGTGAAACCGATCGG- 2646
Query 263 ATGAATCGGTAACACCAATGG-TGACTCGACGGATAACCAACGGGAAAGTCCACG 316
| || ||||||| ||||| || |||||||||||||||||||| ||||||||||||
Sbjct 2647 A-GA-TCGGTAAGACCAAAGGGTGACTCGACGGATAACCAACAGGAAAGTCCACG 2699
> AT2G21460.1 | Symbols: | transposable element gene | chr2:9188338-9194491
REVERSE LENGTH=6154
Length=6154
Score = 189 bits (102), Expect = 2e-47
Identities = 197/238 (83%), Gaps = 26/238 (11%)
Strand=Plus/Plus
Query 35 GGAT-GGATAGACCgatcgtcggacggatcggatcggac-agaccgatcg--t--cgg-a 87
|||| ||| |||||||||||||||||| |||||| |||| || ||||||| | ||| |
Sbjct 1606 GGATGGGACAGACCGATCGTCGGACGGGTCGGATGGGACAAG-CCGATCGTCTGACGGAA 1664
Query 88 cggatcagacagaccgatcgtcggacggatcAGATAGACCGATCGCGTATAAGGGAAAAG 147
||| ||||||||||| ||||||||| || ||| | ||| || | ||||||
Sbjct 1665 CGGGTCAGACAGACCAATCGTCGGATGG----GAT-G---GAT--CG----A--GAAAAG 1708
Query 148 TGTTCGAAGAAGCACGAGGATAAGTGCAACCGAACACACCCAAGGGTCGCCCATGGATGC 207
||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1709 TGTTCGAGGAAGCACAAGGATAAGTGCATCCGAACACACCCAAGGGTCGCCCATGGATGC 1768
Query 208 AATCTCACCGGTAAAGGGAGTAAGTACCGAGAATGGGTAAGTGA-CGTGGTTCACCAT 264
||||| |||| ||||||||| ||| ||| |||||||||||| || |||| ||||||||
Sbjct 1769 AATCTTACCGATAAAGGGAGAAAGCACCAAGAATGGGTAAG-GAACGTGATTCACCAT 1825
Score = 71.3 bits (38), Expect = 6e-12
Identities = 47/51 (92%), Gaps = 1/51 (2%)
Strand=Plus/Plus
Query 267 ATCGGTAACACC-AATGGTGACTCGACGGATAACCAACGGGAAAGTCCACG 316
|||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 1891 ATCGGTAAGTCCAAAGGGTGACTCGACGGATAACCAACGGGAAAGTCCACG 1941
> AT1G41797.1 | Symbols: | transposable element gene | chr1:15560039-15563509
REVERSE LENGTH=3471
Length=3471
Score = 189 bits (102), Expect = 2e-47
Identities = 214/262 (82%), Gaps = 32/262 (12%)
Strand=Plus/Minus
Query 14 GACGGAT-GGAT-GAGTCAGATTGGAT-GGATAGACCgatcgtcggacggatcggatcgg 70
||||||| |||| | | |||| |||| ||| |||||||||||||||||| |||||| ||
Sbjct 708 GACGGATCGGATCG-GCCAGA-CGGATCGGACAGACCGATCGTCGGACGGGTCGGATGGG 651
Query 71 acagaccgatcg--t--cgga-cggatcag-acagaccgatcgtcggacggatcAGATAG 124
|||| ||||||| | |||| ||| || | ||| ||||||||||||| || ||| |
Sbjct 650 ACAGGCCGATCGTCTGACGGAGCGGGTC-GAACAAACCGATCGTCGGATGG----GAT-G 597
Query 125 ACCGATCGCGTATAAGGGAAAAGTGTTCGAA-GAAGCACGAGGATAAGTGCAACCGAACA 183
||| || | ||||||||||| || ||||||| |||||||||||| |||||||
Sbjct 596 ---GAT--CG----A--GAAAAGTGTTC-AAGGAAGCACAAGGATAAGTGCATCCGAACA 549
Query 184 CACCCAAGGGTCGCCCATGGATGCAATCTCACCGGTAAAGGGAGTAAGTACCGAGAATGG 243
||||||||||||||||||||||||||||| |||||||||||||| ||| ||| |||||||
Sbjct 548 CACCCAAGGGTCGCCCATGGATGCAATCTTACCGGTAAAGGGAGAAAGCACCAAGAATGG 489
Query 244 GTAAGTGA-CGTGGTTCACCAT 264
||||| || |||| ||||||||
Sbjct 488 GTAAG-GAACGTGATTCACCAT 468
> AT4G04655.1 | Symbols: | transposable element gene | chr4:2357418-2364944
FORWARD LENGTH=7527
Length=7527
Score = 183 bits (99), Expect = 8e-46
Identities = 211/260 (81%), Gaps = 28/260 (11%)
Strand=Plus/Minus
Query 14 GACGGAT-GGAT-GAGTCAGATTGGA-TGGATAGACCgatcgtcggacggatcggatcgg 70
||||||| |||| | | |||| ||| ||| |||||||||||||||||| |||||| ||
Sbjct 5174 GACGGATCGGATCG-GCCAGA-CGGAGCGGACAGACCGATCGTCGGACGGGTCGGATGGG 5117
Query 71 acagaccgatcg--t--cgg-acggatcagacagaccgatcgtcggacggatcAGATAGA 125
| || ||||||| | ||| |||| || |||||||||||| ||||| || ||| |
Sbjct 5116 ATAGGCCGATCGTCTGACGGAACGGGTCGGACAGACCGATCATCGGATGG----GAT-G- 5063
Query 126 CCGATCGCGTATAAGGGAAAAGTGTTCGAAGAAGCACGAGGATAAGTGCAACCGAACACA 185
||| || | ||||||||||||| ||||||| |||||||||||| |||||||||
Sbjct 5062 --GAT--CG----A--GAAAAGTGTTCGAGGAAGCACAAGGATAAGTGCATCCGAACACA 5013
Query 186 CCCAAGGGTCGCCCATGGATGCAATCTCACCGGTAAAGGGAGTAAGTACCGAGAATGGGT 245
||||||||||||||||||||||||||| |||| ||||||||| ||| ||| |||||||||
Sbjct 5012 CCCAAGGGTCGCCCATGGATGCAATCTTACCGATAAAGGGAGAAAGCACCAAGAATGGGT 4953
Query 246 AAGTGA-CGTGGTTCACCAT 264
||| || |||| ||||||||
Sbjct 4952 AAG-GAACGTGATTCACCAT 4934
Score = 76.8 bits (41), Expect = 1e-13
Identities = 48/51 (94%), Gaps = 1/51 (2%)
Strand=Plus/Minus
Query 267 ATCGGTAACACC-AATGGTGACTCGACGGATAACCAACGGGAAAGTCCACG 316
|||||||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct 4868 ATCGGTAAGACCAAAGGGTGACTCGACGGATAACCAACGGGAAAGTCCACG 4818
> AT4G06496.1 | Symbols: | transposable element gene | chr4:3136680-3137837
FORWARD LENGTH=1158
Length=1158
Score = 180 bits (97), Expect = 1e-44
Identities = 206/255 (81%), Gaps = 22/255 (9%)
Strand=Plus/Plus
Query 31 GATTGGAT-GGATAGACCgatcgtcggacggatcggatcggacagaccgatcgtcggacg 89
||| |||| || ||||| ||| |||||| ||||| ||||| ||||||| ||||||||||
Sbjct 709 GATCGGATCGGCTAGACTGATGGTCGGAAGGATCAGATCGCACAGACCAATCGTCGGACA 768
Query 90 gatc--a--gac-agaccgatcgtc-g--g--acggatcAGATAGACCGATCG-C----- 133
|||| | | | || ||||||||| | | |||| || || |||||||||| |
Sbjct 769 GATCGGATGGGCTAGGCCGATCGTCAGACGAAACGGGTCGGACAGACCGATCGTCGGAGG 828
Query 134 GTAT--A-AGGGAAAAGTGTTCGAAGAAGCACGAGGATAAGTGCAACCGAACACACCCAA 190
| || | | |||||||||| || ||||||| |||||||||||| ||||||||||||||
Sbjct 829 GGATGGATCGAGAAAAGTGTTTGAGGAAGCACAAGGATAAGTGCATCCGAACACACCCAA 888
Query 191 GGGTCGCCCATGGATGCAATCTCACCGGTAAAGGGAGTAAGTACCGAGAATGGGTAAGTG 250
|||||||||||||||||||||| |||||||||||||| ||| ||| |||||||||||| |
Sbjct 889 GGGTCGCCCATGGATGCAATCTTACCGGTAAAGGGAGAAAGCACCAAGAATGGGTAAG-G 947
Query 251 A-CGTGGTTCACCAT 264
| | || ||||||||
Sbjct 948 AACATGATTCACCAT 962
> AT4G00140.1 | Symbols: EDA34 | Calcium-binding EF-hand family
protein | chr4:51166-53449 REVERSE LENGTH=774
Length=774
Score = 172 bits (93), Expect = 2e-42
Identities = 114/124 (92%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 142 GAAAAGTGTTCGAAGAAGCACGAGGATAAGTGCAACCGAACACACCCAAGGGTCGCCCAT 201
||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 532 GAAAAGTGTTCGAGGAAGCACAAGGATAAGTGCATCCGAACACACCCAAGGGTCGCCCAT 591
Query 202 GGATGCAATCTCACCGGTAAAGGGAGTAAGTACCGAGAATGGGTAAGTGA-CGTGGTTCA 260
||||||||||| |||||||||||||| ||| ||| |||||||||||| || |||| ||||
Sbjct 592 GGATGCAATCTTACCGGTAAAGGGAGAAAGCACCAAGAATGGGTAAG-GAACGTGATTCA 650
Query 261 CCAT 264
||||
Sbjct 651 CCAT 654
> AT5G29060.2 | Symbols: | transposable element gene | chr5:11128470-11129537
REVERSE LENGTH=1068
Length=1068
Score = 167 bits (90), Expect = 8e-41
Identities = 113/124 (91%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 142 GAAAAGTGTTCGAAGAAGCACGAGGATAAGTGCAACCGAACACACCCAAGGGTCGCCCAT 201
||||||||||||| ||||||| |||||||||||| |||||||||| ||||||||||||||
Sbjct 747 GAAAAGTGTTCGAGGAAGCACAAGGATAAGTGCATCCGAACACACTCAAGGGTCGCCCAT 806
Query 202 GGATGCAATCTCACCGGTAAAGGGAGTAAGTACCGAGAATGGGTAAGTGA-CGTGGTTCA 260
|||||||||||||||| ||||||||| ||| ||| |||||||||||| || |||| ||||
Sbjct 807 GGATGCAATCTCACCGATAAAGGGAGAAAGCACCAAGAATGGGTAAG-GAACGTGATTCA 865
Query 261 CCAT 264
||||
Sbjct 866 CCAT 869
> AT3G30816.1 | Symbols: | transposable element gene | chr3:12511659-12513384
FORWARD LENGTH=1029
Length=1029
Score = 165 bits (89), Expect = 3e-40
Identities = 167/201 (83%), Gaps = 19/201 (9%)
Strand=Plus/Plus
Query 63 cggatcggacagaccgatcgtcggacggatc--a---gacagaccgatcg--t--cgg-a 112
|||||||||||||||||||||||||||| || | ||| | ||||||| | ||| |
Sbjct 439 CGGATCGGACAGACCGATCGTCGGACGGGTCAGATGGGACTGGCCGATCGTCTGACGGAA 498
Query 113 cggatcAGATAGACCGATCG-CGTAT-A-A-GG-----GAAAAGTGTTCGAAGAAGCACG 163
||| || || |||||||||| || || | | || ||||||||||||| |||||||
Sbjct 499 CGGGTCGGACAGACCGATCGTCGGATGAGATGGATCAAGAAAAGTGTTCGAGGAAGCACA 558
Query 164 AGGATAAGTGCAACCGAACACACCCAAGGGTCGCCCATGGATGCAATCTCACCGGTAAAG 223
|||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 559 AGGATAAGTGCATCCGAACACACCCAAGGGTCGCCCATGGATGCAATCTTACCGATAAAG 618
Query 224 GGAGTAAGTACCGAGAATGGG 244
|||| ||| ||| ||||||||
Sbjct 619 GGAGAAAGCACCAAGAATGGG 639
> AT2G12540.1 | Symbols: | transposable element gene | chr2:5108873-5110827
REVERSE LENGTH=1955
Length=1955
Score = 163 bits (88), Expect = 1e-39
Identities = 196/243 (81%), Gaps = 27/243 (11%)
Strand=Plus/Minus
Query 31 GATTGGAT-GGATAGACCgatcgtcggacggatcggatcggacagaccgatcg--t--c- 84
||| |||| |||||||||||||||||||||| |||||| |||||| ||||||| | |
Sbjct 1222 GATCGGATCGGATAGACCGATCGTCGGACGGGTCGGATGGGACAGTCCGATCGTCTAACA 1163
Query 85 ggacggatcagacagaccgatcgtcggacggatcAGATAGACCGATCGCGTATAAGGGAA 144
| |||| || |||||| ||||||||||| || ||| | ||| || | |||
Sbjct 1162 GAACGGGTCGGACAGAACGATCGTCGGATGG----GAT--A--GAT--CG----A--GAA 1119
Query 145 AAGTGTTCGAAGAAGCACGAGGATAAGTGCAACCGAACACACCCAAGGGTCGCCCATGGA 204
|||||||||| ||||||| | |||||||||| || |||||||||||||||||||||||||
Sbjct 1118 AAGTGTTCGAGGAAGCACAAAGATAAGTGCATCCAAACACACCCAAGGGTCGCCCATGGA 1059
Query 205 TGCAATCTCACCGGTAAAGGGAGTAAG-TACCGAGAATGGGTAAGTGA--CGTGGTTCAC 261
|||||||| ||| |||||||||| ||| | | |||||||||||| || |||| |||||
Sbjct 1058 TGCAATCTTACCAGTAAAGGGAGAAAGCTTCA-AGAATGGGTAAG-GAAACGTGATTCAC 1001
Query 262 CAT 264
|||
Sbjct 1000 CAT 998
Score = 76.8 bits (41), Expect = 1e-13
Identities = 48/51 (94%), Gaps = 1/51 (2%)
Strand=Plus/Minus
Query 267 ATCGGTAACACC-AATGGTGACTCGACGGATAACCAACGGGAAAGTCCACG 316
|||||||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct 932 ATCGGTAAGACCAAAGGGTGACTCGACGGATAACCAACGGGAAAGTCCACG 882
> AT4G08760.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: nucleolin like 1 (TAIR:AT1G48920.1); Has 36 Blast hits
to 36 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:5584739-5591133 REVERSE
LENGTH=1566
Length=1566
Score = 147 bits (79), Expect = 1e-34
Identities = 174/214 (81%), Gaps = 29/214 (14%)
Strand=Plus/Minus
Query 14 GACGGAT-GGAT-GAGTCAGATTGGAT-GGATAGACCgatcgtcggacggatcggatcgg 70
||||||| |||| | | |||| |||| ||| |||||||||||||||||| |||||| ||
Sbjct 1156 GACGGATCGGATCG-GCCAGA-CGGATCGGACAGACCGATCGTCGGACGGGTCGGATGGG 1099
Query 71 aca-gaccgatcg--t--cgga-cggatcagacagaccgatcgtcggacggatcAGATAG 124
||| | ||||||| | |||| ||| || |||||||||||||||||| || ||| |
Sbjct 1098 ACATG-CCGATCGTCTGACGGATCGGGTCGGACAGACCGATCGTCGGATGG----GAT-G 1045
Query 125 ACCGATCGCGTATAAGGGAAAAGTGTTCGAAGAAGCACGAGGATAAGTGCAACCGAACAC 184
||| || | ||||||||||||| ||||||| |||||||||||| ||||||||
Sbjct 1044 ---GAT--CG----A--GAAAAGTGTTCGAGGAAGCACAAGGATAAGTGCATCCGAACAC 996
Query 185 ACCCAAGGGTCGCCCATGGATGCAATCT-CACCG 217
|||||||||||||||||||||||||||| |||||
Sbjct 995 ACCCAAGGGTCGCCCATGGATGCAATCTTCACCG 962
> AT2G12385.1 | Symbols: | transposable element gene | chr2:4991988-4995221
REVERSE LENGTH=3234
Length=3234
Score = 143 bits (77), Expect = 1e-33
Identities = 189/241 (78%), Gaps = 15/241 (6%)
Strand=Plus/Plus
Query 31 GATTGGAT-GGATAGACCgatcgtcggacggatcggatcggacagaccgatcgtcggacg 89
||| |||| ||| ||| |||| || ||||||||||||||||||||| ||||||| |||
Sbjct 2178 GATCGGATCGGACAGATCGATAGTTGGACGGATCGGATCGGACAGATCGATCGTTGGA-T 2236
Query 90 gatcaga-cagaccgatcgtcg-gacggatcAGATAGACC--GAT-CGCGTATAAGGGAA 144
| | || | || | | | | ||||||| | |||| ||| ||| || |||||
Sbjct 2237 AAACGGATCGGATCTAACAAAGAGACGGAT--TACCGACCGGGATAGGCGGAT-CGGGAA 2293
Query 145 AAGTGTTCGAAGAAGCACGAGGATAAGTGCAACCGAACACACCCAAGGGTCGCCCATGGA 204
| |||||||| ||||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct 2294 AGGTGTTCGAGGAAGCACAAAGATAAGTGCATCCGAACACACCCAAGGGTCGCCCATGGA 2353
Query 205 TGCAATCTCACCGGTAAAGGGA-GTAAGTACCGA-GAATGGGTAAGTGA-CGTGGTTCAC 261
|||||| | |||| |||| ||| | ||| ||||| || ||||||| || |||| |||||
Sbjct 2354 TGCAATATTACCGATAAAAGGAAGAAAGCACCGAAGA-TGGGTAAA-GAACGTGATTCAC 2411
Query 262 C 262
|
Sbjct 2412 C 2412
> AT3G47240.1 | Symbols: | transposable element gene | chr3:17393861-17394988
REVERSE LENGTH=720
Length=720
Score = 135 bits (73), Expect = 2e-31
Identities = 92/101 (91%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 165 GGATAAGTGCAACCGAACACACCCAAGGGTCGCCCATGGATGCAATCTCACCGGTAAAGG 224
||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 417 GGATAAGTGCATCCGGACACACCCAAGGGTCGCCCATGGATGCAATCTTACCGGTAAAGG 476
Query 225 GAGTAAGTACCGAGAATGGGTAAGTGA-CGTGGTTCACCAT 264
||| ||| ||| |||||||||||| || |||| ||||||||
Sbjct 477 GAGAAAGCACCAAGAATGGGTAAG-GAACGTGATTCACCAT 516
Score = 76.8 bits (41), Expect = 1e-13
Identities = 48/51 (94%), Gaps = 1/51 (2%)
Strand=Plus/Plus
Query 267 ATCGGTAACACC-AATGGTGACTCGACGGATAACCAACGGGAAAGTCCACG 316
|||||||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct 582 ATCGGTAAGACCAAAGGGTGACTCGACGGATAACCAACGGGAAAGTCCACG 632
> AT2G12530.1 | Symbols: | transposable element gene | chr2:5106678-5106974
REVERSE LENGTH=297
Length=297
Score = 128 bits (69), Expect = 4e-29
Identities = 108/126 (86%), Gaps = 5/126 (4%)
Strand=Plus/Minus
Query 142 GAAAAGTGTTCGAAGAAGCACGAGGATAAGTGCAACCGAACACACCCAAGGGTCGCCCAT 201
|||| |||||||| ||||||| | |||||||||| || ||||||||||||||||||||||
Sbjct 241 GAAAGGTGTTCGAGGAAGCACAAAGATAAGTGCATCCAAACACACCCAAGGGTCGCCCAT 182
Query 202 GGATGCAATCTCACCGGTAAAGGGAGTAAG-TACCGAGAATGGGTAAGTGA--CGTGGTT 258
||||||||||| ||| |||||||||| ||| | | |||||| ||||| || |||| ||
Sbjct 181 GGATGCAATCTTACCAGTAAAGGGAGAAAGCTTCA-AGAATGAGTAAG-GAAACGTGATT 124
Query 259 CACCAT 264
||||||
Sbjct 123 CACCAT 118
> AT2G01040.1 | Symbols: | transposable element gene | chr2:65436-67139
REVERSE LENGTH=1704
Length=1704
Score = 76.8 bits (41), Expect = 1e-13
Identities = 48/51 (94%), Gaps = 1/51 (2%)
Strand=Plus/Plus
Query 267 ATCGGTAACACC-AATGGTGACTCGACGGATAACCAACGGGAAAGTCCACG 316
|||||||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct 1117 ATCGGTAAGACCAAAGGGTGACTCGACGGATAACCAACGGGAAAGTCCACG 1167
> AT5G32540.1 | Symbols: | transposable element gene | chr5:12195731-12199558
FORWARD LENGTH=3828
Length=3828
Score = 71.3 bits (38), Expect = 6e-12
Identities = 47/51 (92%), Gaps = 1/51 (2%)
Strand=Plus/Plus
Query 267 ATCGGTAACACC-AATGGTGACTCGACGGATAACCAACGGGAAAGTCCACG 316
|||||||| ||| || ||||||||||||||||||||||||||||||| |||
Sbjct 2186 ATCGGTAAGACCAAAGGGTGACTCGACGGATAACCAACGGGAAAGTCTACG 2236
> AT3G33189.1 | Symbols: | transposable element gene | chr3:14028344-14029295
FORWARD LENGTH=952
Length=952
Score = 67.6 bits (36), Expect = 8e-11
Identities = 43/46 (93%), Gaps = 1/46 (2%)
Strand=Plus/Plus
Query 270 GGTAACACC-AATGGTGACTCGACGGATAACCAACGGGAAAGTCCA 314
||||| ||| || |||||||||||||||||||||||||||||||||
Sbjct 365 GGTAAGACCAAAGGGTGACTCGACGGATAACCAACGGGAAAGTCCA 410
> AT5G28110.1 | Symbols: | transposable element gene | chr5:10108331-10111154
FORWARD LENGTH=1482
Length=1482
Score = 65.8 bits (35), Expect = 3e-10
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 282 GGTGACTCGACGGATAACCAACGGGAAAGTCCACG 316
|||||||||||||||||||||||||||||||||||
Sbjct 1128 GGTGACTCGACGGATAACCAACGGGAAAGTCCACG 1162
> AT5G28120.1 | Symbols: | transposable element gene | chr5:10111393-10114354
FORWARD LENGTH=1521
Length=1521
Score = 65.8 bits (35), Expect = 3e-10
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 282 GGTGACTCGACGGATAACCAACGGGAAAGTCCACG 316
|||||||||||||||||||||||||||||||||||
Sbjct 1128 GGTGACTCGACGGATAACCAACGGGAAAGTCCACG 1162
> AT4G08095.1 | Symbols: | transposable element gene | chr4:4998060-5001542
REVERSE LENGTH=3483
Length=3483
Score = 63.9 bits (34), Expect = 1e-09
Identities = 47/53 (89%), Gaps = 2/53 (4%)
Strand=Plus/Plus
Query 265 GAATCGGTAACACC-AATGGTGACTCGACGGATAACCAACGGGAAAGTCCACG 316
||| || ||| ||| || ||||||||||||||||||||||||||||||| |||
Sbjct 972 GAA-CGATAAGACCAAAGGGTGACTCGACGGATAACCAACGGGAAAGTCTACG 1023
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17945586393
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5