BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480941
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20920.1 | Symbols: | Protein of unknown function (DUF3353)... 1568 0.0
> AT2G20920.1 | Symbols: | Protein of unknown function (DUF3353)
| chr2:8998686-8999932 FORWARD LENGTH=1049
Length=1049
Score = 1568 bits (849), Expect = 0.0
Identities = 934/976 (96%), Gaps = 2/976 (0%)
Strand=Plus/Plus
Query 1 AACAACAACAGAAGAAAGAAATGGCAACCGCAGCTCTCTCCGCCGCCCGACCCAACCGCC 60
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 23 AACACCAACAGAAGACAGAAATGGCAACCGCAGCTCTCTCCGCCGCCCGACCCAACCGCC 82
Query 61 TTAGTTCAGCCTCCTCCGATGTTCCTCTCCACCCGCTTTATCTCCCTACCAAGCTCCAAT 120
|||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 83 TTAGCTCAGCCTCCTCCGATGTTCCTCTCCACCCCCTATATCTCCCTACCAAGCTCCAAT 142
Query 121 TTCCTTCCCGGAAGACTCAGCTGTGGCGCTCCGCCGCGATTCTCTTACCCACACGGCGGC 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 TTCCTTCCCGTAAGACTCAGCTGTGGCGCTCCGCCGCGATTCTCTTACCCACACGGCGGC 202
Query 181 GATGCGCTGCGCCTAGAGCTAGTTCTCGCGCCGACGATTCTCCGCCGTTCGATATGTCTG 240
|||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 203 GATGCGCTCCGCCTAGAGCTAGTTCTCGCGCCGACGATTCTCCACCCTTCGATATGTCTG 262
Query 241 TGGAGACTGCGCTTAAGGTTCTCGGTGTCTCTGAAGGAGCTTCCTTCGACGAAATTCTTC 300
||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 263 TGGAGACGGCGCTTAAGGTTCTCGGAGTCTCCGAAGGAGCTTCCTTCGACGAAATTCTTC 322
Query 301 GCGCCAAGAAATCGATCCTTGCTTCTCGTAAGGACGACCCCAACGCCATCTCTCAGGCTG 360
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 323 GTGCCAAGAAATCGATCCTGGCTTCTCGTAAGGACGACCCCAACGCCATCTCTCAGGCTG 382
Query 361 AGGCTGCATATGACATGCTACTGATGCAGAGCCTTAACCAACGCCGAGCAGGAAAAGTTG 420
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 383 AGGCTGCATATGACATGCTGCTGATGCAGAGCCTAAACCAACGCCGAGCAGGAAAAGTTG 442
Query 421 TAAGCAACAACATTCGCTACGCTGATGTTAAATCTAGTAACCCTCTGGGAACAAGTACTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 TAAGCAACAACATTCGCTACGCTGATGTTAAATCTAGTAACCCTCTGGGAACAAGTACTG 502
Query 481 TGTCTCGGTGGCTGAAGAATCCACCTGTCTCTGTTGATATGCCATCCACGAGCGATCT-G 539
|| ||| |||| ||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 503 TGACTCAGTGGATGAAGAATCCACCTGTCTCTGTTGATATGCCTTCCACGAGCGATCTCG 562
Query 540 GGAATACAAGCTGGAGTCTATGGAGCCATGATGGTTTTTACTTACGTGAACGGGAGTTCC 599
||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 563 GGA-TACAAGCTGGAGTCTATGGAGCCATGATGGTTTTGACTTATGTGAATGGGAGTTCC 621
Query 600 TTAGAGTCTTCTGGGATGCCTTACGCTGGTGCTGATGTGCCCGGACTTATATTGGCTAGC 659
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 622 TTTGAATCTTCTGGGATGCCTTATGCTGGTGCTGATGTGCCCGGACTTATATTGGCTAGC 681
Query 660 AGCTTTGGAGCTTCCCTATACTTTATGACCAAAAAGAATGTCAAGCTAGGGAAAGCAGCT 719
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 682 AGCTTTGGGGCTTCCCTATACTTTATGACCAAAAAGAAAGTCAAGCTAGGGAAAGCAGCT 741
Query 720 GCGTTAACAGCAGGAGGATTAGTGGCAGGTGCAGTGGTGGGATCGGCCATTGAGACCTGG 779
||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 742 GCGTTGACGGCAGGAGGATTAGTGGCAGGTGCAGTGGTGGGATCAGCCATTGAGACCTGG 801
Query 780 CTGCATGTTGATGTGGTCCCGTTTCTGGGTCTCCACTCCCCAGCTGCAGTCGTTAGTGAA 839
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 802 CTGCACGTTGATGTGGTTCCGTTTCTGGGTCTCCACTCCCCAGCTGCAGTCGTGAGTGAA 861
Query 840 TTCATAGTCTTCTCTCAGTTCTTGGTGTCTCTATGCTTACGGTAGAACTTTGTACATTGG 899
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 862 TTCATAGTATTCTCTCAGTTCTTGGTGTCTCTATGCTTAAGGTAGAACTTTGTACATTGG 921
Query 900 CTTCTGCAAAATTGGCTCAACCTGTCACGCTGGTATATGTACTCCGTTTATATGCATTTT 959
||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 922 CTTATGCAAATTTGGCTCAACCTGTCACGCTGGTATATGTACTTCGTTTATATGCATTTT 981
Query 960 GTACAGAACAATCAAA 975
|||||||||| |||||
Sbjct 982 GTACAGAACACTCAAA 997
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47722439650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5