BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480954
Length=798
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21060.1 | Symbols: ATGRP2B, ATCSP4, GRP2B | glycine-rich pr... 987 0.0
> AT2G21060.1 | Symbols: ATGRP2B, ATCSP4, GRP2B | glycine-rich
protein 2B | chr2:9036793-9037650 REVERSE LENGTH=858
Length=858
Score = 987 bits (534), Expect = 0.0
Identities = 748/840 (89%), Gaps = 60/840 (7%)
Strand=Plus/Plus
Query 1 TTAGTTCGTCGGAGAG-TTTCTGAATCATAATGAGC---GGCGGCGACGAAAACATGAGT 56
|||||||||||||||| ||| || |||| ||||||| || || |||| |||||||||
Sbjct 35 TTAGTTCGTCGGAGAGATTT-TG-ATCAGAATGAGCGGAGGAGGAGACGTGAACATGAGT 92
Query 57 GGTGGAGAGAGACGCAAGGGAACGGTTAAGTGGTTTGATACGCAGAAGGGGTTTGGTTTC 116
|||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 93 GGTGGAGACAGACGCAAGGGAACGGTGAAGTGGTTTGATACACAGAAGGGGTTTGGTTTC 152
Query 117 ATCACACCTAACGACGGTGGTGACGATCTCTTCGTTCACCAGTCTTCCATCAGATCTGAA 176
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 ATCACACCTAGCGACGGTGGTGACGATCTCTTCGTTCACCAGTCTTCCATCAGATCTGAA 212
Query 177 GGATTTCGTAGCCTCGCCGCTGATGAATCTGTTGAGTTCGAGGTTGAGGTTGACAACACC 236
||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| ||
Sbjct 213 GGATTTCGTAGCCTCGCAGCTGAGGAATCTGTTGAGTTCGACGTTGAGGTTGACAACTCC 272
Query 237 GGCCGTCCCAAGGCTGTTGAAGTGTCTGGACCCGACGGTGCTCCCGTTCAGGGAAATAGC 296
||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||
Sbjct 273 GGCCGTCCCAAGGCTATTGAAGTGTCTGGACCCGACGGTGCTCCCGTTCAGGGTAACAGC 332
Query 297 ---GGTGGTGGTTCATCtggtggacgcggtggtttt---ggcggtggtggaagaggaggc 350
||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 333 GGTGGTGGTGGTTCATCTGGTGGACGCGGTGGTTTTGGCGGCGGTGGTGGAAGAGGAGGG 392
Query 351 ggacgtggtggtggaggttacggaggaggcggtggttatggtggtAGAGGAAGCGGTGGC 410
||||||||||| ||| | ||||||||| ||||||||||| |||||||||||||||
Sbjct 393 GGACGTGGTGGAGGAAGCTACGGAGGA------GGTTATGGTGGAAGAGGAAGCGGTGGC 446
Query 411 CGTGGAGGAGGTGGCGGTGATAATTCTTGCTTTAAGTGCGGTGAACCAGGTCACATGGCG 470
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 CGTGGAGGAGGTGGTGGTGATAATTCTTGCTTTAAGTGCGGTGAACCAGGTCACATGGCG 506
Query 471 AGAGAATGCTCTCAAggtggtggtggtggtggatacagtggaggtggtggtggtggtgga 530
||||||||||||||||||||||| || |||||| ||||| || || | |||||||
Sbjct 507 AGAGAATGCTCTCAAGGTGGTGGAGG------ATACAGCGGAGGCGG-GG-G-TGGTGGA 557
Query 531 aggtacgggtctggcggcgg---agg------tggtgg------aAGCTGCTACAGCTGT 575
|||||||||||||||||||| ||| |||||| ||||||||||||||||
Sbjct 558 AGGTACGGGTCTGGCGGCGGCGGAGGAGGAGGTGGTGGTGGCTTAAGCTGCTACAGCTGT 617
Query 576 GGAGAGTCTGGGCATTTTGCAAGGGATTGCACTAGCGGTGGTGCTCGTTGAAGCAAACCA 635
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 GGAGAGTCTGGGCACTTTGCAAGGGATTGCACTAGCGGTGGTGCTCGTTGAAGCAAACCA 677
Query 636 GACGGTGAAGAAGGGGTAAATCAGTCATCGATCCCTCTTCTCAC-TGACTTCTATCAAAT 694
||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 678 GACTGTGAAGAAGGGGTAAATCAGTCATCGATCCCTCTTCTC-CGTGACTTCTATCAAAT 736
Query 695 -ATTATCTATCTTTTGTTATTCGACTCTCT-CA-TGTT-TT--CGGA-TTTATT--T-A- 743
||||||||||||||||||||||||||||| || |||| || |||| |||||| | |
Sbjct 737 TATTATCTATCTTTTGTTATTCGACTCTCTTCAATGTTGTTTTCGGAATTTATTAATTAG 796
Query 744 -A-TTA-GG--GTTATGGTTATGGTGCCTTGTGATTTGAGTAAGAATTTGGATTGGTTTT 798
| || || |||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 797 GACTTGTGGTTGTTATGGTTATGGTTCCTTGTGATTTGAGAAAGAAACTGGATTGGTTTT 856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38830995631
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5