BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480956
Length=1850
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21070.3 | Symbols: FIO1 | methyltransferases | chr2:9040852... 2076 0.0
> AT2G21070.3 | Symbols: FIO1 | methyltransferases | chr2:9040852-9043626
FORWARD LENGTH=1756
Length=1756
Score = 2076 bits (1124), Expect = 0.0
Identities = 1357/1464 (93%), Gaps = 38/1464 (3%)
Strand=Plus/Plus
Query 35 GTTTCGATGCGTAACGGGAAGAAGAGAGGTCGCTCAGAACCTGGAACCACAAAGCAACCC 94
||||| ||||| | ||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 83 GTTTCAATGCGGAGTGGGAAGAAGAGAGCTCGCTCAGAACCTGGATCCACAAAGCAACCC 142
Query 95 CGAAACAAATACTCCGATAACCCACCCGATTTTGCCTCGTTAGCGTCTCTTTACCCTTCT 154
|||| |||||||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 143 CGAAGCAAATACTCCGACAACCCACCGGATTTTGCCTCGTTAGCGTCTCTTTACCCATCT 202
Query 155 TTCAAGCCCTTTGTTTTCTTCTCCGGTGGTCGAGCTCGCATCGACTGGACCGATTACAAC 214
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 203 TTCAAGCCCTTTGTTTTCTTCTCCGGTAGTCGAGCTCGCATCGACTGGACCGATTACAAC 262
Query 215 GCAACCAGAGAGCTCACTCGTATCCTCCTTCTACACGACCACGGCGTCAACTGGTGGATT 274
|||||| |||||||||||||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct 263 GCAACCCGAGAGCTCACTCGTGTCCTCCTTCTACATGACCATGGCGTCAACTGGTGGATT 322
Query 275 CCTGATGGACAGCTTTGCCCAACTGTTCCTAATAGATCGAATTACATTCATTGGATCAAT 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 CCTGATGGACAGCTTTGCCCAACTGTTCCTAATAGATCGAATTACATTCATTGGATCAAT 382
Query 335 GATCTTTTGTCCTCTGAGG-TCATTCAAAGTTT--G-GGTG--GG--G--AAGTAAAGGG 384
|||||||||||||||| || ||||||||||||| | |||| || | ||||||||||
Sbjct 383 GATCTTTTGTCCTCTG-GGATCATTCAAAGTTTGGGTGGTGATGGAAGTAAAGTAAAGGG 441
Query 385 CTTTGACATTGGTACTGGGGCCAATTGCATTTATCCTCTCCTTGGTGCATCTCTTTTTGG 444
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 442 CTTTGACATTGGTACTGGGGCTAATTGCATTTATCCTCTCCTTGGTGCATCTCTTTTTGG 501
Query 445 TTGGAGTTTTGTTGGCTCAGATTTTACTGCTGTTGCTCTAGAATGGGCAGAGAAGAATG- 503
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 502 TTGGAGTTTTGTTGGCTCAGATTTTACTGTTGTAGCTCTAGAATGGGCAGAGAAGAATGT 561
Query 504 TCAAAAGTAATCCCCATTTTTCAGACCTTATCGAGATCAGAGACTCTAAAGTTCTTCCAC 563
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 562 TC-AAAGTAATCCCCATTTTTCAGACCTTATCGAGATCAGAGACTCTAAAGTTCCTCCAC 620
Query 564 AGAGTTCCTCTGTTCC--------------C-GAGAGTGAGTTAACCATACAGGAGGAAG 608
|| |||||||||| || | ||||| ||| |||||||||||||||||
Sbjct 621 AGTGTTCCTCTGTCCCTGAGGTTGAAAATACAGAGAGGGAGAAAACCATACAGGAGGAAG 680
Query 609 CCGAAATTTCCGCCACGGTTCAGTCT-ATTAATCTTGTAGATGACAACCAGAGCTATACT 667
| |||||||||||||||||| ||||| ||| ||| |||||||| |||| | || |
Sbjct 681 CTGAAATTTCCGCCACGGTTAAGTCTGATT-ATC------ATGACAACAAGAGTTTTATT 733
Query 668 GAACCAGCTGTATTACTCGGTGTTGTCAAGGAAAATGAAACGTTCGACTTCTGTATGTCC 727
|||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 734 GAACCAGCTGTACTACTCGGTGTTGTCAAGGAAAACGAAACATTCGACTTCTGTATGTCC 793
Query 728 AATCCTCCATTTTTTGAGACCTTCGAAGAATCAGGACTTAATCCTAAAACTTCATGCGGT 787
||||||||||||||||||||||| |||||| | || || |||||||||||||||||||||
Sbjct 794 AATCCTCCATTTTTTGAGACCTTTGAAGAAGCGGGGCTAAATCCTAAAACTTCATGCGGT 853
Query 788 GGAACTCCTGAGGAGATGGTTTGCAATGGTGGGGAGCAAGCTTTCGTGTCTCGTATTATC 847
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 854 GGAACTCCTGAAGAGATGGTTTGCAATGGTGGGGAGCAAGCTTTTGTGTCACGTATTATC 913
Query 848 GAAGATAGCACTGTACTGAGGCAAAGATTCAGGTGGTACACTTCAATGCTTGGGAAGAAG 907
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 914 AAAGATAGCGCTGTACTGAGGCAAAGATTCAGGTGGTACACTTCAATGCTTGGAAAGAAG 973
Query 908 GCTAACCTCAAACTCTTGATATCTAAGCTTTGGCAAGTGGGTGTAACCATTGTGAAGACC 967
||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||
Sbjct 974 GCTAACCTCAAACTCTTGATATCTAAGCTTTGGGAAGTGGGAGTGACCATTGTGAAGACC 1033
Query 968 ACTGAATTTGTCCAAGGTCAAACATCCCGGTGGGGCCTCGCCTGGTCCTTCATGCCCACA 1027
||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||| | |
Sbjct 1034 ACTGAATTTGTCCAAGGTCAAACATCCCGTTGGGGCCTCGCTTGGTCGTTTATGCCAATA 1093
Query 1028 GCTAGGAAGATTATAGCACCTCCTGTAGTCAAAAAGAGTGTTCTTTCTTTTATGCTTGAG 1087
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1094 GCTAGGAAGATTATAGCACCTCCTGTAGTCAAAAAGAGCGTTCTTTCTTTTATGCTTGAG 1153
Query 1088 GGCATTAAACGGCAGTACAGTGCCGTAGATGTGCTGCAATCAGTTGAAGAATTCTTCAAG 1147
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 TGCATTAAACGGCAGTACAGTGCCGTAGATGTGCTGCAATCAGTTGAAGAATTCTTCAAG 1213
Query 1148 AGGTGTGGTGCCTCGTGCAAATTAAACTCTTCTACATTTTCTGTTGACATTGTTGCATCT 1207
|| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1214 AGCTGTGGCGCCTCGTGCAAGTTAAACTCTTCTACATTTTCTGTTGACATTGTTGCATCT 1273
Query 1208 AATGACCAGTGCAACTCAATCTCAAAGAATGGCATTACAGATGTAGATAGTGTAAGAAGC 1267
||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1274 AATGACCAGTGCAACACAATCTCAAAGAATGACATTGCAGATGTAGATAGTGTAAGAAGC 1333
Query 1268 CACGGATATGACAAACAGTCACTGGATGGATCCAGTTTGCAAGTCCCTGAAGATAACCTA 1327
|| |||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1334 CATGGATATGAAAAACAGTCACTGGATGGCTCCAGTTTGCAAGTCCCTGAATATAACCTA 1393
Query 1328 TCTTTCCGCATCTTGGTGTTCCAACAGATGCCAGGAACGTTGCTTATAAAAGGATCATTG 1387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1394 TCTTTCCGCATCTTGGTGTTCCAACAGATGCCAGGAACGTTGCTTATAAAAGGATCATTG 1453
Query 1388 CAGCAAAAAGATAGTCCCCTCTCAGGGTTGTTCTC-AGTGGTCTTCGGTTCTTTGGAAGA 1446
||||| |||||||||||||||||||| |||||||| || |||||||||||| ||||||||
Sbjct 1454 CAGCAGAAAGATAGTCCCCTCTCAGGATTGTTCTCCAG-GGTCTTCGGTTCGTTGGAAGA 1512
Query 1447 AAGTTTGAAGTCTAAATTTTGCCG 1470
|||||||||||| |||||||||||
Sbjct 1513 AAGTTTGAAGTCCAAATTTTGCCG 1536
Score = 158 bits (85), Expect = 2e-37
Identities = 112/124 (90%), Gaps = 6/124 (5%)
Strand=Plus/Plus
Query 1732 GACTTACCTTGCGGGTAAAGATACAC--AGCCAAGTTGGATTACCCAAAAGTAGTAAAGG 1789
|||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1536 GACTTACCTTACGGGGAAAGATACACAGAGCCAAGTTGGATTACCCAAAAGTAGTAAAGG 1595
Query 1790 AGA-A-AAAGAGAGAGGGTTCTTCACTTCACGTGACAAAGCAAGCTT-CTATTGCTTTTC 1846
||| | | |||||||||||||||||||||||||||| ||||||| || || |||| ||||
Sbjct 1596 AGAGAGAGAGAGAGAGGGTTCTTCACTTCACGTGACTAAGCAAG-TTACTTTTGCCTTTC 1654
Query 1847 TCTC 1850
||||
Sbjct 1655 TCTC 1658
Score = 60.2 bits (32), Expect = 7e-08
Identities = 34/35 (97%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 1 ACTCCAATTCACCGCCGTTGTCTTCTCTCTCACCG 35
|||||| ||||||||||||||||||||||||||||
Sbjct 21 ACTCCAGTTCACCGCCGTTGTCTTCTCTCTCACCG 55
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91565794080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5