BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480957
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21080.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2322 0.0
> AT2G21080.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: vacuole; EXPRESSED IN: 15 plant structures;
EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3537 (InterPro:IPR021924);
BEST Arabidopsis thaliana protein match is: Protein of unknown
function (DUF3537) (TAIR:AT3G20300.1); Has 141 Blast hits
to 141 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 140; Viruses - 0; Other Eukaryotes
- 1 (source: NCBI BLink). | chr2:9043699-9045389 FORWARD
LENGTH=1529
Length=1529
Score = 2322 bits (1257), Expect = 0.0
Identities = 1443/1531 (94%), Gaps = 19/1531 (1%)
Strand=Plus/Plus
Query 1 GGAAAGATATGAATCCTGGTGAAGATGAATACTTTCTCCATCACCTCCCAATCCTCTCTA 60
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1 GGAAAGATATGAATCCTGGTGAAGATGAATACTTTCTCCTTCACCTCCCAAACCTCTCTA 60
Query 61 ACACACCCTTACAACCTTCAAAATCCTTGCCTTCTGATGATTTGCGCAACTTTCGTCTTC 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACACCCCCTTACAACCTTCAAAATCCTTGCCTTCTGATGATTTGCGCAACTTTCGTCTTC 120
Query 121 TCCTCAAGTGGTGCGCTCTGGATCACTCCTCCTCTTCTGGTAAAGCTGTGTCCTATATGA 180
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 TCCTCAAGTGGTGCGCTTTGGATCACTCCTCCTCTTGTGGTAAAGCTGTGTCCTATATGA 180
Query 181 TGTTTGTAGTATTCACCTTACTAGTCCCTCTCATAAGTTGTCTGTCCATCAAAACTCCTA 240
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 TGTTTGTAGTCTTCACCTTACTAGTCCCTCTCATAAGTTGTCTGTTTATCAAAACTCCTA 240
Query 241 G-AACCTGGCCTTCATCAGTTATGGACGTTAACTCTTTCAATGTACTCGTCCAATTTCCA 299
| |||| |||||||| |||||||||| | |||||||||||||| |||||||| ||||||
Sbjct 241 GAAACC-GGCCTTCAGCAGTTATGGATGCGAACTCTTTCAATGTGCTCGTCCAGTTTCCA 299
Query 300 GAGTCTGGACTTGCCGTCATTGGTTTCTTGACTCTAATATGTTTCTTCAGAATATATAGT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAGTCTGGACTTGCCGTCATTGGTTTCTTGACTCTAATATGTTTCTTCAGAATATATAGT 359
Query 360 CTCACACAGCTTCTGTTTCTTGATGATTCTACCTTGGTGAGGCTTGGATATTCGCGCGAA 419
|||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 360 CTCACAAAGCTTCTGTTTCTTGATGATTCTACCTTGGTGAGGCTTGGATATTCACGAGAA 419
Query 420 CTTGACAAGGCCTTATGCTACCTAGCCTACATACTTGTACCGTCTTTCCTTGTGGAACTT 479
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CTTGACAAGGCCTTACGTTACCTAGCCTACATACTTGTACCGTCTTTCCTTGTGGAACTT 479
Query 480 GTGCATAAGAGCATATTTTTCTCCTCCGCTGAAGTATCATTTCCTTTCATAAAGTCATCT 539
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 480 GTGCATAAGAGCATATTTTTCTACTCCGCCGAAGTATCATTTCCTTTCATAAAGTCATCT 539
Query 540 TGTGCTGCATTGAACTTTGTGATGTTCTTCCTCGTCTTATTTTCATGGGTTTACCGGGCA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 540 TGTGCTGCATTGAACTTTGTGATGTTCTTCCTCGTCTTATTTTCATGGGTTTACCGGACA 599
Query 600 GGAGTGTTCTTGCTAGTTTGTATCCTGTTCCGGTTGACCTGTGAGCTACAGATACTGAGG 659
|||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 600 GGAGTGTTCTTGCTTGTTTGTATCTTGTTCCGGTTGACCTGTGAGCTGCAGATACTGAGG 659
Query 660 TTCCGAGGGCTTCACAAGCTGTTCGATAGATGTGGATCAGACACCATAGAAGATGTATGC 719
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 660 TTTCGAGGGCTTCACAAGCTGTTTGATAGATGTGGATCAGACACCATAGAAGATGTATGC 719
Query 720 AAGGAACATGTGAGGATCAAGAAACAATTGTCGGCTACAAGCCACAGGTACAGGTTTTTC 779
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 720 AAGGAACATGTGAGGATCAAGAAACAATTGTCGGCTACAAGTCACAGATACAGGTTCTTC 779
Query 780 ATCATCGCGGCCTTTGTTGTGATTAGTACCAGTCAGTTTGTGGCCTTATTGTTGGTTCTT 839
|||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 780 ATCATCACCGCCTTTGTTGTGATAAGTACCAGTCAGTTTGTGGCCTTATTGTTGGTTCTT 839
Query 840 GCATCAAAGTCTGACAGGAGTTTCCTCAGCTCTGGTGATTTGTTGGTATGTTCTGCAGTA 899
|| ||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 840 GCCTCAAAGTCTGAAAAGAGTTTCCTCAGCTCTGGTGATTTGGTGGTATGTTCTGCAGTA 899
Query 900 CAGTTAAGCGGATTCTTCTTGTGCGTGTTGGGTGCTGCAAGAATCACACACAGAGCTCAA 959
||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 900 CAGCTAAGTGGATTCTTCTTGTGCTTGTTGGGTGCTGCAAGAATCACACACAGAGCTCAA 959
Query 960 GGAGTAGTCTGTATTGCAACAAGGTGGCACATGGCTTTGACATGCGCTTCTGAAGCTGTA 1019
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 960 GGAGTAGTGTGTATTGCAACAAGGTGGCACATGGCTTTGACATGCGCTTCTGAAGCCGTA 1019
Query 1020 TCACCCGAGAGTGATACTGACTCATCCGACAACATATACATTAATGTGTCACCGTCACTG 1079
|||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1020 TCACCCGAAAGTGACACTGACTCATCCGACAACATATACATCAATGTGTCACCGTCACTG 1079
Query 1080 GATCTATCTTCCTTCTTCCAGGCTAGGCAAGCTCTAGTGGAATACCTGCGACATAACAAC 1139
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1080 GATCTATCTTCCTTCTTCCAGGCTAGGCAAGCTCTAGTGGAATATTTGCGACATAACAAC 1139
Query 1140 AAGGGGATTACGCTCTATGGATATGCACTCGATAGGGGATTGCTTCATACGCTCTTTGCA 1199
||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1140 AAGGGGATTACACTCTATGGTTATGCACTCGATAGGGGACTGCTTCATACGCTCTTTGCA 1199
Query 1200 TTTGAGTTCTCTCTGGTGATGTGGATCCTGAGCAAGGTCGTGGTTCTATCTTAGAACTCA 1259
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1200 TTTGAGTTCTCTCTGGTGATGTGGATCCTGAGCAAAGTCGTGGTTCTATCTTAGAATTCA 1259
Query 1260 CTAAGGTAAT-ATGAGACAACAAAAGACGCTGCGAAAGCTTCTCTTGAAGCCTGACTTTC 1318
||||||| | |||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1260 TTAAGGTATTTATGAGACAACAAAAGACGCTGCAAAAGCTTCTCGTGAAGCCTGACTTTT 1319
Query 1319 CTTAAGATGTATGCGCTGATTGATGCACGACACTTGGTCACCGGTGTTTGACCAAA-ATA 1377
| |||||| |||| ||||||||||||| ||||||||||||||||||||||||||| | |
Sbjct 1320 CGAAAGATGGATGCTCTGATTGATGCACAACACTTGGTCACCGGTGTTTGACCAAACA-A 1378
Query 1378 AAAATAAAATTTGATCACTGGTTTAACAGACAGAACTGGGTTATTGT--TG-GG--TT-T 1431
|||| |||| |||||||||||||||||||||||||| |||||||||| || || || |
Sbjct 1379 AAAA-AAAACTTGATCACTGGTTTAACAGACAGAACCGGGTTATTGTCCTGTGGCGTTGT 1437
Query 1432 -G-A----A-TGTTTGATGAACATCATAAATATTGGTTGCTCCAACTGTATTGCTTTTTC 1484
| | | ||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1438 TGGATTTGAATGTTTGATGAACATCATAAATGTTGGTTGCTCCAACTGTATCGCTTTTTC 1497
Query 1485 TTTATTTTTGTACTTGTCCCTTTCTTTGCCA 1515
|||||||| ||| |||||||||||| |||||
Sbjct 1498 TTTATTTTAGTATTTGTCCCTTTCTCTGCCA 1528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74748611505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5