BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480959
Length=676
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21100.1 | Symbols: | Disease resistance-responsive (dirige... 1007 0.0
> AT2G21100.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr2:9048131-9049404 REVERSE
LENGTH=734
Length=734
Score = 1007 bits (545), Expect = 0.0
Identities = 635/677 (94%), Gaps = 12/677 (2%)
Strand=Plus/Plus
Query 1 AAACTCATTTTACTTTCACAGTTACAAACACTTTGTTACATTTTAGACCCCATCAGAAAA 60
|||||||||||||| ||||| ||||||||||||||||||| ||||||||||| |||||||
Sbjct 1 AAACTCATTTTACTCTCACAATTACAAACACTTTGTTACAATTTAGACCCCACCAGAAAA 60
Query 61 AA-TGAAAATGGCAAAAGAGGAATATGTATCAAGAATGTTGGTTATGTTAATAATGATAA 119
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGCGAAAATGGCAAAAGAGGAATATGTATCAAGAATGTTGGTTATGTTAATAATGATAA 120
Query 120 TGCCACTGGCTGCTCGGGGATCGAGACTGTACAGTTGGGCTAATCGGCTTGAGGAAACAG 179
||||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 121 TGCCACTGGTTGCTCAGGGATCGAGACTGCATAGTTGGGCTAATCGGCTTGAGGAAACAG 180
Query 180 GGAAGGAGAAGATAACAAACCTTCAGTTCTATTTCCATGACACCTTGAGCGGCAAGAATC 239
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGAAGGACAAGGTAACAAACCTTCAGTTCTATTTCCATGACACCTTGAGCGGCAAGAATC 240
Query 240 CAACGGCCGTTAAAGTGGCTCAGGGCACAGACACCGACAAATCCCCGACGCTGTTCGGCG 299
|||| || ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 CAACCGCAGTTAAGGTGGCTCAGGGCACAGACACCGAAAAATCCCCGACGCTGTTCGGCG 300
Query 300 CTGTGTTCATGGTCGACGACGCTCTAACGGAGACCGCTGATCCAAAATCCAAACTCGTGG 359
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 301 CTGTGTTCATGGTCGACGACGCTCTCACCGAGACCGCTGATCCAAAATCCAAACTCGTTG 360
Query 360 GACGGGCGCAAGGCCTTTACGGTTCTTCATGTAAAGAAGAGGTAGGTTTGATAATGGCCA 419
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 361 GACGGGCGCAAGGCCTTTACGGTTCTTCATGTAAAGAAGAAGTAGGTTTGATAATGGCCA 420
Query 420 TGAGCTTCTGTTTCGAGGATGGTCCATACAAGGACAGTACCATAAGCATGATCGGGAAGA 479
||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 421 TGAGCTTCTGTTTCGAGGACGGTCCTTACAAGGACAGCACCATAAGCATGATCGGGAAGA 480
Query 480 ACTCCGCGATGAACCCAATCAGAGAAATGCCTATTGTTGGCGGCACGGGAATGTTCCGAA 539
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 481 ACTCCGCGATGAACCCAATCCGAGAAATGCCTATTGTTGGCGGCACGGGAATGTTCCGGA 540
Query 540 TGGCTCGTGGCTACGCTATTGCCCAGACCAATTGGTTTGATCCCAAGACCGGTGATGCCA 599
||||||||||||| |||||||||| ||| ||||||||||||||||| |||||||||||||
Sbjct 541 TGGCTCGTGGCTATGCTATTGCCCGGACTAATTGGTTTGATCCCAAAACCGGTGATGCCA 600
Query 600 TCGTTGGCTATAACGTTACCGTTGTGCACTAGAAAATTAAGGCTTTGTTTCACTTTCATA 659
|||||||||||||||||||| || ||||||||||| |||||||| | | ||||
Sbjct 601 TCGTTGGCTATAACGTTACCATTATGCACTAGAAA-----GGCTTTGT---A-T--CATA 649
Query 660 TAATACGGCGACGTTTT 676
|||||||||||||||||
Sbjct 650 TAATACGGCGACGTTTT 666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32702429697
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5