BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480960
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21110.1 | Symbols: | Disease resistance-responsive (dirige... 789 0.0
> AT2G21110.1 | Symbols: | Disease resistance-responsive (dirigent-like
protein) family protein | chr2:9050290-9050850 REVERSE
LENGTH=561
Length=561
Score = 789 bits (427), Expect = 0.0
Identities = 520/565 (92%), Gaps = 5/565 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAAGAAAATAGGATTAGTAGGGTTTAGTCTTTATCTTTGCCTCACCTTTGCACTC 60
|||| |||||| ||||||||||| | ||||| ||||||||||| |||| || ||||||
Sbjct 1 ATGGGGAAGAATTTAGGATTAGTA--G-TTAGTTTTTATCTTTGCATCACGTTCGCACTC 57
Query 61 GGCGAATACTATTCCA-AAACTCGTCCATTCACACCGAAACAACAAGTGGTCACAAATCT 119
|||||||||| || || ||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 58 GGCGAATACT-TTTCAGAAACTCGTCCAATCACACCGAAACAACTAGTGGTCACAAATCT 116
Query 120 CCATTTCTTCTTTCACGACACTCTCACCGCCCCAAACCCATCAGCCGTCCTCGTCGCCAA 179
|||||||||||||||||||||||||||||| ||||||||||||||| ||||| | |||||
Sbjct 117 CCATTTCTTCTTTCACGACACTCTCACCGCTCCAAACCCATCAGCCATCCTCATTGCCAA 176
Query 180 GCCTACTCTCACAGGAGGAGACAAGGACTCTTCTCCCTCACCGTTCGGCTCTCTTTTCGC 239
|||||||| |||| |||||||||| ||||||||||||||||| ||||| |||||||| ||
Sbjct 177 GCCTACTCACACAAGAGGAGACAACGACTCTTCTCCCTCACCTTTCGGTTCTCTTTTTGC 236
Query 240 TCTCGACGACCCTCTCACCATCAGACCGGACCCGAAATCCAAGAAGATCGGGAACGCTAG 299
||||||||||||||||||| | |||| |||||||||||| |||||||||||||||||||
Sbjct 237 TCTCGACGACCCTCTCACCGTTGGACCAGACCCGAAATCCGAGAAGATCGGGAACGCTAG 296
Query 300 AGGGATGTATGTTTCCTCCGGAAAACATGTTCCCACATTGACCATGTACGTCGACTTCGG 359
||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 297 AGGGATGTACGTTTCCTCTGGAAAACATGTCCCCACGTTGACCATGTACGTCGACTTCGG 356
Query 360 GTTCACCGCCGGCAAGTTCAACGGTAGTTCTATCGCCGTGTTTTCGAGGAATACGATAAC 419
|||||| | |||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 357 GTTCACATCGGGCAAGTTTAACGGTAGTTCTATAGCCGTGTTTTCGAGGAATACGATAAC 416
Query 420 GGAGAAAGAGAGGGAACTTGCAGTTGTGGGAGGTCGAGGAAGGTTTAGGATGGCTAGAGG 479
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 417 GGAGAAAGAGAGGGAGGTTGCAGTTGTGGGAGGCCGAGGAAGGTTTAGGATGGCTAGAGG 476
Query 480 AGTGGGTCAACTCAATACATATTACGTTAACTTGACCAGTGGGGATGCTATCGTTGAGTA 539
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 477 AGTGGCTCAACTCAATACATATTACGTTAACTTGACCAATGGGGATGCTATCGTTGAGTA 536
Query 540 TAATGTCACTCTCTATCATTATTAA 564
||||||||||||||||||||||||
Sbjct 537 CAATGTCACTCTCTATCATTATTAA 561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27076205233
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5