BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480961
Length=1609
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21120.1 | Symbols: | Protein of unknown function (DUF803) ... 2045 0.0
> AT2G21120.1 | Symbols: | Protein of unknown function (DUF803)
| chr2:9051748-9054613 REVERSE LENGTH=1689
Length=1689
Score = 2045 bits (1107), Expect = 0.0
Identities = 1276/1354 (94%), Gaps = 26/1354 (2%)
Strand=Plus/Plus
Query 276 TAGGGATAATGGAGTCGGACAATGGGAAGGGGTTGATACTAGCTGTAGCGTCAAGTGTTT 335
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 TAGGG-GAATGGAGACGGACAATGGGAAGGGGTTGATACTAGCTGTAGCGTCAAGTGTTT 399
Query 336 TCATTGGTTCCAGCTTCATTCTTAAGAAGAAAGGTCTCAAACGAGCTGGTGCTATTGGTA 395
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 400 TCATTGGTTCCAGCTTCATTCTTAAGAAGAAAGGTCTTAAGCGAGCTGGTGCTATTGGCA 459
Query 396 CCCGTGCAGGATATGGAGGTTATACTTACTTATTAGAGCCGCTTTGGTGGGCAGGCATGG 455
|||| |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 460 CCCGAGCAGGATATGGAGGCTATACTTATTTATTAGAGCCGCTTTGGTGGGCAGGGATGG 519
Query 456 TTACTATGATTGTTGGAGAAGCTGCAAACTTTGTGGCTTATATTTATGCTCCCGCTGTAC 515
|||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 520 TTACTATGATTGTTGGAGAAGCTGCAAACTTTGTGGCTTACATTTATGCACCAGCTGTAC 579
Query 516 TCGTTACTCCTCTTGGTGCATTAAGTATAATTATCAGTGCTGTTTTGGCACATTTCCTAT 575
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 580 TCGTTACTCCTCTCGGTGCATTAAGTATAATCATCAGTGCTGTTTTGGCACATTTCTTAT 639
Query 576 TGAAGGAAAAACTTAAGAAAATGGGGGTTCTCGGATGTGTGTCTTGCATCGTTGGGTCTG 635
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 640 TGAAGGAAAAACTTAAGAAAATGGGGGTTCTCGGATGTGTGTCTTGCATTGTTGGGTCTG 699
Query 636 TTGTTATTGTCATACACGCACCTAAGGAGCAGACTCCTAATTCCGTTGAAGAAATATGGA 695
|||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 700 TTGTTATTGTTATACACGCACCTAAGGAACAGACTCCTAATTCCGTTGAGGAAATATGGA 759
Query 696 ATTTGGCTACTCAGCCAGCTTTTCTAATCTACGTAGCCATAACCATGTCGATTGTCCTTG 755
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 ATCTGGCTACTCAGCCAGCTTTTCTAATCTACGTAGCCATAACCATGTCGATTGTCCTTG 819
Query 756 CTTTAATTCTGCACTTTGAACCCCTGTGCGGCCAAACAAACATTCTGGTTTATATCGGAA 815
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 820 CTTTAATTCTGCATTTTGAACCCCTGTGCGGCCAAACAAACATTCTGGTTTATATTGGAA 879
Query 816 TCTGTTCGTTAATGGGTGCTCTCACTGTTATGAGCATAAAGGCTATCGGAATTGCGATAA 875
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 880 TCTGTTCGTTAATGGGTGCTCTCACTGTTATGAGCATAAAAGCTATTGGAATTGCGATAA 939
Query 876 AATTAACAATGGAGGGAGTAAGCCAGATCGGGTATCCACAGACATGGCTTTTTGTCATGG 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 AATTAACAATGGAGGGAGTAAGCCAGATCGGGTATCCACAGACATGGCTTTTTGTCATGG 999
Query 936 TTGCAGTAACCTGTGTCGTTACACAATTGATTTATCTAAACAAGGCTTTGGACACATTCA 995
|||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1000 TTGCAGTAACTTGTGTCGTTACACAATTGATTTACCTAAATAAGGCTTTGGACACATTCA 1059
Query 996 ACGCAGCCATTGTTTCTCCAGTGTACTATGTAATGTTTACAACCCTCACAATAGTTGCTA 1055
|||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 1060 ACGCAGCCATTGTTTCTCCAGTATACTATGTAATGTTCACAACCCTCACAATTGTTGCTA 1119
Query 1056 GTGCAATAATGTTCAAGGACTGGTCTGGGCAAGACGCAGCCAGCGTAGCCTCTGAGTTAT 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 GTGCAATAATGTTCAAGGACTGGTCTGGGCAAGACGCAGCCAGCGTAGCCTCTGAGTTAT 1179
Query 1116 GTGGATTCATCACTGTGCTCACAGGAACAATGATACTCCATGGCACAAGAGAAGAGGAAC 1175
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1180 GTGGATTCATCACTGTGCTCACAGGGACAATGATACTCCATGGCACAAGAGAAGAGGAAC 1239
Query 1176 AACAACAAGCTTCTTCAGAACAAGTAAGATGGTACGACTCGAGAAAGAGCATGAACGAAG 1235
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1240 AACAACAAGCTTCTTCAGAACATGTAAGATGGTACGACTCGAGAAAGAGCATGAACGAAG 1299
Query 1236 AACATCTGATAAGTTTGTACAGTCCTGAATACTAGGAA-AA-AC-AT-C--T--CTCTAG 1287
||||| || |||| ||||||||||||||||||||||| || | || | | ||||||
Sbjct 1300 AACATTTGGTAAGCCTGTACAGTCCTGAATACTAGGAAGAAGAAGATGCAATATCTCTAG 1359
Query 1288 ACTC-CTAATAGATTGAATGAATATTTGCCAAGAACAAGCCTCAGG-GATCTTAAAACTG 1345
||| | ||||||||||||||| ||||||||| ||||||||||| | | |||||||||||
Sbjct 1360 GCTCTC-AATAGATTGAATGAA-ATTTGCCAAAAACAAGCCTCATGAG-TCTTAAAACTG 1416
Query 1346 GATCAATCAACAAATCTGCGGTCGGGTTCGTTTTTGTATTGTTTG-TGGTCTCTGTACAG 1404
||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 1417 GATCAATCAACAAATCTGCGGTCGGGTTCATTTTTGTATTGTTTTATGGTCACTGTACAG 1476
Query 1405 ACAAAAAAGTTTGTCTAGTTAAAAAA-CTTGACATTCTTTAGTTTTGATCT--GTGTCTC 1461
|||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||
Sbjct 1477 ACAAAAAAGTTTGTCTAGTTAAAAAAACTTCACATTCTTTAGTTTTGATCTTTGTGTCTC 1536
Query 1462 T-T-CTTAGTACAGTTACAGGTGGTCTTCTTATCTGGACT-TTT-GTCCAAATTTAC--T 1515
| | ||||||||||| |||||| |||||||||||||||| ||| |||||||||||| |
Sbjct 1537 TCTTCTTAGTACAGT-ACAGGTCTTCTTCTTATCTGGACTCTTTTGTCCAAATTTACACT 1595
Query 1516 GTTATATATTTATATATGTATCTTCATTCTTCTAGGATGAAATATTCCTTAATTGTATCT 1575
||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||
Sbjct 1596 GTTATATATTTATATATGTATCTACATTTTTCTAGGATGAAATATTCCTTCATTGTATCT 1655
Query 1576 CAATTGAATGaaaaaaaTAAGTTAAAAGTTTGAT 1609
|| |||||||||| || |||| ||||||||||||
Sbjct 1656 CACTTGAATGAAATAA-TAAGGTAAAAGTTTGAT 1688
Score = 217 bits (117), Expect = 3e-55
Identities = 250/305 (82%), Gaps = 46/305 (15%)
Strand=Plus/Plus
Query 1 GAGAGCTCGTGGAACCAGAtctctctctctctctctcttctctcATTTTGA--TTTTTGA 58
|||||||||| ||||||||||||| ||||| ||| || ||||| ||||||| |||||||
Sbjct 16 GAGAGCTCGTCGAACCAGATCTCTTTCTCTTTCT-TC-TCTCTAATTTTGATTTTTTTGA 73
Query 59 A---T-TT-T-C--AGC--AATCGCAGAAGTCGTC--G-G-CCGCGTTGCATCGGACCAC 104
| | || | | ||| |||||||||||||||| | | ||||||||||||| |||||
Sbjct 74 ATTTTCTTCTGCAAAGCAAAATCGCAGAAGTCGTCGTGTGTCCGCGTTGCATCGAACCAC 133
Query 105 TTGTCCGATTCTCTTTCGTCA----C-C----ATC--CAG---CAACAACCCTTGTTTCA 150
|||| |||||||||||||||| | | ||| ||| |||||||||||||||||
Sbjct 134 TTGTTCGATTCTCTTTCGTCATCCTCTCTTATATCATCAGCAACAACAACCCTTGTTTCA 193
Query 151 AATTTCTTCATTTCCGCCGGATTTATAATAGCAGATTGATTCTGATCGGAGACATCCCCG 210
||||||||||||||||||||||||||||| |||||||||||||||||| | |
Sbjct 194 AATTTCTTCATTTCCGCCGGATTTATAATCGCAGATTGATTCTGATCG-A----T----- 243
Query 211 AGAGATAGGGTTAT-CAAAAGGAGAGACCGAGATTGACTTCAATTGTCTTCC-GATTCGA 268
|||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||||||
Sbjct 244 AGAGATAGGGTTATTCAA--GGAGAGACCTCGATTGACTTCAATTGTCTTCCTGATTCGA 301
Query 269 TAGAT 273
|||||
Sbjct 302 TAGAT 306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79467462735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5