BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480962
Length=773
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21130.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-... 976 0.0
> AT2G21130.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans
isomerase family protein | chr2:9055398-9056232 REVERSE
LENGTH=835
Length=835
Score = 976 bits (528), Expect = 0.0
Identities = 706/784 (90%), Gaps = 43/784 (5%)
Strand=Plus/Plus
Query 1 AAATATCTCCTCTTCGTCCTCAACAGCTTCTCCAGAAAATCTAGGTCACACACttttttt 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 AAATATCTTCTCTTCGTCCTCAACAGCTTCTCCAGAAAATCTAGGTCACACAC---TTTT 57
Query 61 ttATTCCTC-CTCCCAAAATCG---AACAACAATGGCGACGCATCCCAAAGTTTTCTTCG 116
| ||||| ||||||||||| ||||||||||||| ||||||| |||||||||||||
Sbjct 58 AAAATCCTCGTTCCCAAAATCGAACAACAACAATGGCGTCGCATCCTAAAGTTTTCTTCG 117
Query 117 ACATGACCATCGGCGGTGCACCGGCGGGGAAGATCGTGATGGAGCTTTACACCGACAAGA 176
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 118 ACATGACCATCGGCGGTGCACCAGCGGGGAAGATCGTGATGGAGCTTTACACCGACAAGA 177
Query 177 CACCAAAGACGGCGGAGAATTTCAGAGCTCTATGCACCGGAGAGAAAGGCGTTGGACGTA 236
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 178 CACCAAAGACGGCGGAGAATTTCAGAGCTCTATGCACCGGAGAGAAAGGCGTCGGACGTA 237
Query 237 GCGGGAAGCCACTTCACTTCAAAGGATCTGCGTTTCACCGTGTGATCCCTAATTTCATGT 296
|||| |||||||||||||||||||||||| |||||||||| |||||||| ||||||||||
Sbjct 238 GCGGAAAGCCACTTCACTTCAAAGGATCTTCGTTTCACCGCGTGATCCCAAATTTCATGT 297
Query 297 GTCAAGGAGGAGATTTCACCAATGGAAACGGAACTGGTGGTGAATCGATCTACGGATCCA 356
| |||||||||||||||||||| || |||||||||||||| ||||||||||||||| |||
Sbjct 298 GCCAAGGAGGAGATTTCACCAAAGGTAACGGAACTGGTGGCGAATCGATCTACGGAGCCA 357
Query 357 AGTTTGAGGATGAGAATTTCGAGAGGAAGCACACAGGACCTGGGATTTTGTCGATGGCTA 416
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AATTTGAGGATGAGAATTTCGAGAGGAAGCACACAGGACCTGGGATTTTGTCGATGGCTA 417
Query 417 ACGCTGGTGCTAACACTAATGGATCTCAGTTTTTCATCTGTACGGTGAAGACTGATTGGC 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ACGCTGGTGCTAACACTAATGGATCTCAGTTTTTCATCTGTACGGTGAAGACTGATTGGC 477
Query 477 TCGATGGTAAGCATGTGGTGTTTGGTCAGGTGATTGAAGGCTTGGACGTTGTTAAAGCTA 536
| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 478 TTGATGGTAAGCATGTGGTGTTTGGTCAGGTGGTTGAAGGCTTGGACGTTGTTAAGGCTA 537
Query 537 TTGAGAAGAGT-GGATCTTCGTCTGGTAAGCCGACGAAGCCTGTTGTCATTGCTGATTGT 595
||||||||| | |||||||| ||||| |||||||||||||||||||| || |||||||||
Sbjct 538 TTGAGAAGA-TCGGATCTTCTTCTGGAAAGCCGACGAAGCCTGTTGTGATCGCTGATTGT 596
Query 596 GGTGAGATCTCCTCTTAGATTCCGGT-GTT-TC-T-A-G-----AA-------GTTTCT- 637
||||||||||| |||||||||||||| || | | | | || ||||||
Sbjct 597 GGTGAGATCTCTTCTTAGATTCCGGTTGTGGTGGTGACGGTTTCAATTTCTATGTTTCTA 656
Query 638 ----T--CTT---AGCTA-TTATGGACTCTCTGTGATGTTTGCTCTGTTTCTGCTTTTGG 687
| ||| ||||| ||||||||| ||||| |||||||||||||||||||||
Sbjct 657 GAAGTTTCTTCTTAGCTAATTATGGACT----GTGATCTTTGCTCTGTTTCTGCTTTTGC 712
Query 688 GTATTTTCCTAATTAAGCACCATTAATAATAAGTT--TTTTAAGGAATTGTGGCAttttt 745
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 713 GTATTTTCCTAATTAAGCACCATTAATAATAAGAAAGTTTTAAGGAATTGTGGCGTTTTT 772
Query 746 ttAA 749
|||
Sbjct 773 GTAA 776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37575141956
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5