BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480964
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21150.1 | Symbols: XCT | XAP5 family protein | chr2:9065338... 1938 0.0
> AT2G21150.1 | Symbols: XCT | XAP5 family protein | chr2:9065338-9068093
FORWARD LENGTH=1245
Length=1245
Score = 1938 bits (1049), Expect = 0.0
Identities = 1149/1196 (96%), Gaps = 11/1196 (1%)
Strand=Plus/Plus
Query 1 GAAGAATCTTGTGAAATTCCGATTCCGATTTTGAGCGAAAGGAAGCCGGAGA-AAGAAAA 59
||||||||| ||||| |||||||||||||||||||| |||||||| | |||| |||||||
Sbjct 1 GAAGAATCTAGTGAATTTCCGATTCCGATTTTGAGCTAAAGGAAG-C-GAGAGAAGAAAA 58
Query 60 TATGTCGGGTATGGGTGACGGCTACGTTGGTACGGCTCAAGATGCGGTGAGGATACGGCG 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 GATGTCGGGTATGGGTGACGGCTACGTTGGTACGGCTCAAGATGCGGTGAGGATACGGCG 118
Query 120 GCTTCAGAAGCAAAGAGAGGCCGAGCGCaaaaaaaTCCAAGACCTCAAGAGCAAGTCTGC 179
|||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 119 GCTTCAGAAGCAAAGAGAGGCCGAACGCAAAAAAATACAAGAGCTCAAGAGCAAGTCTGC 178
Query 180 TTCCGGCAAAGACCAATCTGGTCTTCTCCAATTCGGCACCAGCTCTTGCGAGATTCTTGA 239
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 179 CTCCGGCAATGACCAATCTGGTCTTCTCCAATTCGGCACCAGCTCGTGCGAGATTCTTGA 238
Query 240 CACTGCTTTCAAGAAGGAAACAGTGGGTTTAGTTACAAGAGAGGAGTATGTTGAGAAGAG 299
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 239 CACTGCTTTCAAGAAGGAAACAGTGGGTTTAGTTACAAGAGAGGAGTATGTGGAGAAGAG 298
Query 300 GGTTAATATTCGTAATAAGTTCGAGGAAGAAGAGAAGGAGAAACTGCAGAAGCTACAGCA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GGTTAATATTCGTAATAAGTTCGAGGAAGAAGAGAAGGAGAAACTGCAGAAGCTACAGCA 358
Query 360 AGAGGAAGAGGAGTTGCAGCTAGAGAAGCGTAACAAGAAGAGAAAGATTAAGGGATCTTC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGAGGAAGAGGAGTTGCAGCTAGAGAAGCGTAACAAGAAGAGAAAGATTAAGGGATCTTC 418
Query 420 CCGCTTATCTTTTGCTGAAGATTTTGAGAATGGCAGTGGTGAAGATGATGGAGAAAACAA 479
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 419 CCGCTTATCTTTTGCTGAAGATTTTGAGAATGGCAGTGATGAAGATGATGGAGAAAACAA 478
Query 480 GAGTTCTGGGACAGTGAACTTACGCTGCGGAAAACTTGGCAAGGACCCCTCAGTGGAAAC 539
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GAGTTCTGGGACAGGGAACTTACGCTGCGGAAAACTTGGCAAGGACCCCTCAGTGGAAAC 538
Query 540 TAATTTCCTGCCTGACAGTGAGCGGGAGGCTGAAGAACAAGCTGAACGTGAAAGGCTGAA 599
||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct 539 GAATTTCCTGCCTGACAGTGAGAGGGAGGCGGAGGAACAAGCTGAACGTGAAAGGCTGAA 598
Query 600 AAAGCAGTGGCTTCGTGAACAAGAGCAGATTAAAAACGAGCCTCTTGAGATTACTTACAG 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GAAGCAGTGGCTTCGTGAACAAGAGCAGATTAAAAACGAGCCTCTTGAGATTACTTACAG 658
Query 660 TTACTGGGATGGGACTGGCCATAGACGAGTTATTCAGGTCCGCAAGGGTGACCCAATTGG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTACTGGGATGGGACTGGCCATAGACGAGTTATTCAGGTCCGCAAGGGTGACCCAATTGG 718
Query 720 GAATTTTCTACGGGCTGTTCAGCAGCAGCTTGCCCCTGACTTCCGGGAGATTCGGACGGC 779
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GAATTTTCTGCGGGCTGTTCAGCAGCAGCTTGCCCCTGACTTCCGGGAGATTCGGACGGC 778
Query 780 ATCAGTGGAGAATCTGTTATATGTAAAGGAAGATCTTATTATCCCACATCAACACAGTTT 839
||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 779 ATCAGTGGAGAATTTACTATATGTAAAGGAAGATCTTATTATTCCACATCAACACAGTTT 838
Query 840 CTATGAGCTGATCATTAACAAAGCTAGAGGGAAGAGTGGCCCGCTGTTTCACTTTGATGT 899
|||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 839 CTATGAGCTGATCATTAACAAAGCGAGGGGGAAGAGTGGGCCGCTGTTTCACTTTGATGT 898
Query 900 GCATGAAGACGTGAGAACAATAGCAGATGCAACGATAGAGAAAGACGAGTCGCATGCGGG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GCATGAAGACGTGAGAACAATAGCAGATGCAACGATAGAGAAAGACGAGTCGCATGCGGG 958
Query 960 TAAAGTAGTGGAGAGGCATTGGTACGAGAAGAACAAGCATATATTCCCTGCTTCCAGATG 1019
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TAAAGTTGTGGAGAGGCATTGGTACGAGAAGAACAAGCATATATTCCCTGCTTCCAGATG 1018
Query 1020 GGAGATTTACGACCCGACAAAGAAATGGGAACGGTACACAGTCCATGGAGATTGATGT-T 1078
|||||||||||||||||||||||||||||||||||||||||||||||| |||| || | |
Sbjct 1019 GGAGATTTACGACCCGACAAAGAAATGGGAACGGTACACAGTCCATGGGGATTAAT-TCT 1077
Query 1079 GGAGCAGAAGATGCTTTTGATGGATCGCTTTGTTGACATGATGGATCAGATTTGGTGTAA 1138
||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1078 GGACCAGAACATGCTTTTGATGGATCG-TTTGTTGACATGATTGATCAGATTTGGTGTAA 1136
Query 1139 TAGTAGTGGAATGTTCATGGCATTCATTTTTTAATATTTATTCTTCTTCCCTTAAT 1194
|||||||||||||||||||||||| ||| ||| | ||||||||||||| |||
Sbjct 1137 TAGTAGTGGAATGTTCATGGCATT--TTT---AATGCTCATTCTTCTTCCCTCAAT 1187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58634236560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5