BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480966
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21160.1 | Symbols: | Translocon-associated protein (TRAP),... 1714 0.0
> AT2G21160.1 | Symbols: | Translocon-associated protein (TRAP),
alpha subunit | chr2:9068318-9070431 FORWARD LENGTH=1111
Length=1111
Score = 1714 bits (928), Expect = 0.0
Identities = 1036/1085 (95%), Gaps = 19/1085 (2%)
Strand=Plus/Plus
Query 1 AAAGAGCAAAAGCATAAATAGCATCgagagagagagaCACTGTTCTCTCATTCATTCGCA 60
||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||
Sbjct 25 AAAGAGCAAAAGCATAAATAGCATC----GAGAGAGACACTG-T-TCTCATTCATTCGCA 78
Query 61 AATTCGTTGACCATTAGTATTTGATAGAAGCAAGCGATGATGAATCTTAGGGTTTTGTTC 120
|||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 79 AATTCGTTGACC---A-TATTTGATAGAATCAAGCGATGATGAATCTTAGGGTTTTGTTC 134
Query 121 CTCGCTCTCCTTCTCCTTGCATCTCCTCTGCTTCAAGTTGCTAGATGTCAATCGGATGCC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 CTCGCTCTCCTTCTCCTTGCATCTCCTCTGCTTCAAGTTGCTAGATGTCAATCGGATGCC 194
Query 181 GAGGATCATTCCAGTCTTGTTGATGATGTTGTGGGAGAAAACAGTGATGATGCCGTTGAG 240
||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||||
Sbjct 195 GAGGATCATTCAAGTCTTGTTGACGATGTTGTGGGAGAAAACACTGATGATGCGGTTGAG 254
Query 241 GAAGATGACCACGATTTGGATATCAACTTGTCATCATTCCCAGGAGTTGAGACTGTTTGT 300
||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 255 GAAGATGACCATGATTTGGATATGAACTTGTCCTCATTTCCAGGAGTTGAGACTGTTTGT 314
Query 301 GTTTTCCCCAAAAACAGTGCCAAATTGGTTCCAGCTGGAGAAGAGACTGAGCTCCTTGTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 GTTTTCCCCAAAAACAGTGCCAAATTGGTTCCAGCTGGAGAAGAGACTGAGCTCCTTGTT 374
Query 361 GGTCTTAAAAATGAGGGGAAAACTAGCGTAGGTGTGATGGGAATTAGGGCCAGCGTTCAT 420
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 375 GGTCTTAAAAATGAAGGGAAAACTAGAGTAGGTGTGATGGGAATTAGGGCCAGCGTTCAT 434
Query 421 CTTCCTTATGATCATAAGTTGTTGGTTCAGAATCTAACCATGTTGAGA-TTCAACAATGC 479
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 435 CTTCCTTATGATCATAAGTTGTTGGTTCAGAATCTAACCATGTTGAGACTT-AACAATGC 493
Query 480 ATCCATCCCAACTTCTCTTCAAGCAACATTCCCGTACATCTTTGCAGTCAGCCAGTACCT 539
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 494 ATCCATCCCAACGTCTCTTCAAGCAACATTCCCATACATCTTTGCAGTCAGCCAGTACTT 553
Query 540 GCAGCCTGGAGCATTTGATCTGGTGGGTTATATCATCTACGACGTGGAAGGAAAGCCATA 599
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 554 GCAGCCTGGAGCATTTGATCTGGTGGGTTATATCATATACGATGTGGAAGGAAAGCCATA 613
Query 600 CCAGAGTGTCTTCTACAATGGAACCATAGAGGTAGTTGAATCTGGAGGTCTTCTCAGCGG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 CCAGAGTGTCTTCTACAATGGAACCATAGAGGTAGTTGAATCTGGAGGTCTTCTCAGCGG 673
Query 660 CGAATCTGTCTTCCTTATAACACTCGGAATCGGTCTCCTCCTCCTCCTCGGTCTATGGGC 719
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 CGAATCTGTTTTCCTTTTAACACTCGGAATCGGTCTCCTCCTCCTCCTCGGTCTATGGGC 733
Query 720 ATACAGCCAAGTTCAGCGTCTCACCAAGAAAACCAAAAAGGTTTCCAAGGTGGAAGTAGG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 ATACAGCCAAGTTCAGCGTCTCACCAAGAAAACCAAAAAGGTTTCCAAGGTGGAAGTAGG 793
Query 780 AACCAGGTCTACAGATGCATCACTCGATGAATGGCTCGAGGGGACTACTTTGTCCAAGAC 839
||| |||||||| || |||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 794 AACTAGGTCTACCGAGGCATCACTCGATGAATGGCTCGAGGGAACTACTTTGGCCAAGAC 853
Query 840 ATTGTCTGGGAAATCGAAGAACAAGAAGAACTAAA--AGAGATGTTTTGCTCCTTCCAGT 897
|| |||||||||| | ||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 854 ATCGTCTGGGAAAACAAAGAACAAGAAGAACTAAAGTAGAGCTGTTTTGCTCCTTCCAGT 913
Query 898 TGTTATAGACTCAGCTTCGGCGTTTTGAAAGAGTTTCCAAGTTTAA-GTTCAGTCTTGAG 956
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 914 TGTTATAGACTCAGCTTCGGCGTTTTGAAAGAGTTTCCAAGTTTAAAGTTCAGTCTTGAG 973
Query 957 GAAATTTAGGGTTTTAAACGTCACttttttttttGGTTCCAGCATTGTACTCTTTAGACA 1016
|||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||
Sbjct 974 GAAATTTAGGGTTTTAAACGACACTTTTTTT---G-TTCCAGCATTGTACTCTTTAGACA 1029
Query 1017 ATCTTTACTTCTTGTCATAAATATTCTCCTCATGAAACCACTTAACTTATAAATGGTTTA 1076
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1030 ATCTTTACTTCTTGTCATAAATATTCTCCTCATGAAACAAGTTAACTTATAAATGGTTTA 1089
Query 1077 GATCT 1081
|||||
Sbjct 1090 GATCT 1094
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52961574975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5