BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480969
Length=589
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21185.1 | Symbols: | unknown protein; Has 9 Blast hits to ... 752 0.0
AT2G21187.1 | Symbols: | other RNA | chr2:9076533-9077048 FORW... 603 8e-172
AT2G21188.1 | Symbols: | other RNA | chr2:9079042-9079538 REVE... 233 1e-60
> AT2G21185.1 | Symbols: | unknown protein; Has 9 Blast hits to
9 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr2:9076437-9077048 REVERSE LENGTH=612
Length=612
Score = 752 bits (407), Expect = 0.0
Identities = 550/614 (90%), Gaps = 29/614 (5%)
Strand=Plus/Plus
Query 1 TATCATCATCAACCATAATAATATCATTTATATAGTAATACCTAACAAACCATTATCTCT 60
|||||||||| ||||||||||||||| || |||||| ||||||||||||||||||||||
Sbjct 3 TATCATCATCGACCATAATAATATCA-TT-TATAGT-GTACCTAACAAACCATTATCTCT 59
Query 61 -GTCTTTATCTTTCTTTGTTTTATTATCTTCC------T----AGCTAG----T----AA 101
| |||||||||||||||||| | |||||||| | |||||| | ||
Sbjct 60 CG-CTTTATCTTTCTTTGTTTCACTATCTTCCGAGGAATAAAAAGCTAGCATTTGACAAA 118
Query 102 T-AAAAAGCAAACC---AAAGAAAACAGTG-AGGGAGGGCGA-GGCGATGCATTACCACG 155
| || ||| ||||| ||| ||| || | | || | || |||||||||||||||||
Sbjct 119 TCAATAAGTAAACCATTAAACAAACCAAAGAAAACAGTGAGAGGGCGATGCATTACCACG 178
Query 156 GCTGCTGCTGCGGACGGTGTAGGGTATCGACGTCTCCGTTGCCGGTAATAGTCATGATCA 215
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 179 GCTGCTGCTGCGGACGGTGTAGAGTATCGACGTCTCCGTTGCCGGTAATAGTCATGATCA 238
Query 216 CGGTGGCCCTCGTCCTCTTAGCCCTTTCCTCCGCCGTGAAATTCGAAGTTGCTGTCTCCT 275
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 239 CGGTGGCCCTCGTCCTCTTAGCCCTTTCCTCCGTCGTTAAATTCGAAGTTGCTGTCTCCT 298
Query 276 CAGGCGAAGATGTGCTGAGCTGGCTTCTCCTCGCCGCGGTTCCATTGGCTCTGCTCTTCG 335
||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 299 CAGGCGAAGATGTGCTGAGTTGGCTCCTCCTAGCCGCGGTTCCATTGGCTCTGCTCTTCG 358
Query 336 CCGTGAGATGTCTCTCTTGTCTTGAAACGTCCAAGCGATCTACTTACTACTGTCCTTGTG 395
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 359 CCGTGAGATGTCTCTCTTGTCTTGAAACGTCAAAGCGATCTACTTACTACTGTCCCTGCG 418
Query 396 GTCGCTGGAGATGCGTTTGCTACTACTAGTTCTGATCTCGCGGTTAGTGTTGTTGCGTTT 455
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 419 GTCGCTGGAGATGCGTTTGCTACTACTAGTTCTGATCTCGTGGTTAGTGTTGTTGGGTTT 478
Query 456 GCGTTTGTGTAAATAAATGATTTCGTAAAATTTTGGGTATTCTTGATGTTTACGTGAAAC 515
|||||| |||||||||||||||||||| | |||| ||||||||||||||||||||||| |
Sbjct 479 GCGTTTATGTAAATAAATGATTTCGTATATTTTTAGGTATTCTTGATGTTTACGTGAAGC 538
Query 516 AAATATGTGTGACGTGAAGCACCGATTTTGGTGGATTTGACGAACGTGATTGATTACAAT 575
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 539 AAATATGTGTGACGTGAAGCACCGATTTAGGTGGATTTGACGAACGTGATTGGTTACAAT 598
Query 576 ATTCAAATCTAACC 589
|||||| | |||||
Sbjct 599 ATTCAATTTTAACC 612
> AT2G21187.1 | Symbols: | other RNA | chr2:9076533-9077048 FORWARD
LENGTH=516
Length=516
Score = 603 bits (326), Expect = 8e-172
Identities = 459/518 (89%), Gaps = 29/518 (6%)
Strand=Plus/Minus
Query 1 TATCATCATCAACCATAATAATATCATTTATATAGTAATACCTAACAAACCATTATCTCT 60
|||||||||| ||||||||||||||| || |||||| ||||||||||||||||||||||
Sbjct 514 TATCATCATCGACCATAATAATATCA-TT-TATAGT-GTACCTAACAAACCATTATCTCT 458
Query 61 -GTCTTTATCTTTCTTTGTTTTATTATCTTCC------T----AGCTAG----T----AA 101
| |||||||||||||||||| | |||||||| | |||||| | ||
Sbjct 457 CG-CTTTATCTTTCTTTGTTTCACTATCTTCCGAGGAATAAAAAGCTAGCATTTGACAAA 399
Query 102 T-AAAAAGCAAACC---AAAGAAAACAGTG-AGGGAGGGCGA-GGCGATGCATTACCACG 155
| || ||| ||||| ||| ||| || | | || | || |||||||||||||||||
Sbjct 398 TCAATAAGTAAACCATTAAACAAACCAAAGAAAACAGTGAGAGGGCGATGCATTACCACG 339
Query 156 GCTGCTGCTGCGGACGGTGTAGGGTATCGACGTCTCCGTTGCCGGTAATAGTCATGATCA 215
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 338 GCTGCTGCTGCGGACGGTGTAGAGTATCGACGTCTCCGTTGCCGGTAATAGTCATGATCA 279
Query 216 CGGTGGCCCTCGTCCTCTTAGCCCTTTCCTCCGCCGTGAAATTCGAAGTTGCTGTCTCCT 275
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 278 CGGTGGCCCTCGTCCTCTTAGCCCTTTCCTCCGTCGTTAAATTCGAAGTTGCTGTCTCCT 219
Query 276 CAGGCGAAGATGTGCTGAGCTGGCTTCTCCTCGCCGCGGTTCCATTGGCTCTGCTCTTCG 335
||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 218 CAGGCGAAGATGTGCTGAGTTGGCTCCTCCTAGCCGCGGTTCCATTGGCTCTGCTCTTCG 159
Query 336 CCGTGAGATGTCTCTCTTGTCTTGAAACGTCCAAGCGATCTACTTACTACTGTCCTTGTG 395
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 158 CCGTGAGATGTCTCTCTTGTCTTGAAACGTCAAAGCGATCTACTTACTACTGTCCCTGCG 99
Query 396 GTCGCTGGAGATGCGTTTGCTACTACTAGTTCTGATCTCGCGGTTAGTGTTGTTGCGTTT 455
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 98 GTCGCTGGAGATGCGTTTGCTACTACTAGTTCTGATCTCGTGGTTAGTGTTGTTGGGTTT 39
Query 456 GCGTTTGTGTAAATAAATGATTTCGTAAAATTTTGGGT 493
|||||| |||||||||||||||||||| | |||| |||
Sbjct 38 GCGTTTATGTAAATAAATGATTTCGTATATTTTTAGGT 1
> AT2G21188.1 | Symbols: | other RNA | chr2:9079042-9079538 REVERSE
LENGTH=370
Length=370
Score = 233 bits (126), Expect = 1e-60
Identities = 161/177 (91%), Gaps = 5/177 (3%)
Strand=Plus/Plus
Query 105 AAAGCAAACCAAAGAAAACAGTGAGGGAGGGCGA--GGCGATGCATTACCACGGCTGCTG 162
||| |||||||||||||||||||| || ||||| ||||||||||||||||| ||||
Sbjct 14 AAA-CAAACCAAAGAAAACAGTGA--GAAGGCGATCAGCGATGCATTACCACGGTTGCTT 70
Query 163 CTGCGGACGGTGTAGGGTATCGACGTCTCCGTTGCCGGTAATAGTCATGATCACGGTGGC 222
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 CTGCGCACGGTGTAGAGTATCGACGTCTCCGTTGCCGGTAATAGTCATGATCACGGTGGC 130
Query 223 CCTCGTCCTCTTAGCCCTTTCCTCCGCCGTGAAATTCGAAGTTGCTGTCTCCTCAGG 279
|||||||| |||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 131 TCTCGTCCTTTTAGCCCTTTCCTCCGTCGTTCAATTCGAAGTTGCTGTCTCCTCAGG 187
Score = 156 bits (84), Expect = 3e-37
Identities = 94/99 (95%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 491 GGTATTCTTGATGTTTACGTGAAACAAATATGTGTGACGTGAAGCACCGATTTTGGTGGA 550
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 186 GGTATTCTTGATGTTTACGTGAAGCAAATATGTGTGACGTGAAGCACCGATTTTGGTGGA 245
Query 551 TTTGACGAACGTGATTGATTACAATATTCAAATCTAACC 589
| ||||||||||||||| ||||||||||||| | |||||
Sbjct 246 TCTGACGAACGTGATTGGTTACAATATTCAATTTTAACC 284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28332058908
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5