BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480976

Length=471
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21200.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   608    1e-173


> AT2G21200.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr2:9083906-9084375 REVERSE LENGTH=470
Length=470

 Score =  608 bits (329),  Expect = 1e-173
 Identities = 429/474 (91%), Gaps = 19/474 (4%)
 Strand=Plus/Plus

Query  1    AAAACAAAGCC-AAATCATAATCAATAACTCAGAACTTGGACACTAAGTCTTTTTCCCTG  59
            |||||||| || ||||||||||||  | |||||||||||||||||||||||| |||||||
Sbjct  1    AAAACAAA-CCAAAATCATAATCAGCAGCTCAGAACTTGGACACTAAGTCTTCTTCCCTG  59

Query  60   ATCAAACTTTGAGAGAGAGCAAAGGCTATGATGCGAGGTATTTTGGCTGCAAGGAAGATT  119
            ||||||||||  ||||||  || |||||||||||||||||||||||||||||| ||||||
Sbjct  60   ATCAAACTTT--GAGAGA--AATGGCTATGATGCGAGGTATTTTGGCTGCAAGAAAGATT  115

Query  120  CTAACAAGCAAAGCAGCTTCGACACCAAAAGGATTTCTTGCAGTATATGTAGGGGAGAAC  179
            |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||  
Sbjct  116  CTAACAAGCAAAGCAGCTTCAACACCAAAAGGATTTCTTGCGGTATATGTAGGGGAGAGT  175

Query  180  CAGAAGAAGAGATATATGGTGCCAGTGACGTTCTTGAACCAGCCTTGTTTTCAAGCTCTG  239
            ||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||
Sbjct  176  CAGAAGAAGAGATATATGGTGCCAGTTTCGTTCTTGAACCAGCCTTCTTTTCAAGCTCTG  235

Query  240  CTGAGTAAAGCTGAAGAAGAGTTCGGGTTTGATCATCCCATGGGTGGCTTGACAATCCCT  299
            ||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  236  CTGAGTACAGCCGAAGAAGAGTTCGGGTTTGATCATCCTATGGGTGGCTTGACAATCCCT  295

Query  300  TGCCCTGAAGATACTTTTGTCGCTGTAGCTTCTCAGCTGCGATAGTAGAACCAAACAGAG  359
            || |||||||||||||||||||||| ||||||||||||  ||||||||||||||||||| 
Sbjct  296  TGTCCTGAAGATACTTTTGTCGCTGCAGCTTCTCAGCTATGATAGTAGAACCAAACAGAT  355

Query  360  AAACAtttttttCTTTTACTAGAGAATTAGAAACCAATGtatatatatataCATACCTTT  419
                 ||||||| |||||||||||||||||||||| ||||||||| | | ||   | |||
Sbjct  356  TTT--TTTTTTT-TTTTACTAGAGAATTAGAAACCTATGTATATACA-A-AC---C-TTT  406

Query  420  TTCCTCTTTCTTGTTGAAAGAGTTGTTGC-AAAGGAGAGAAATGTAA-TGGAAA  471
            ||||||||||||||||||||||||||| | ||||||||||||| ||| ||||||
Sbjct  407  TTCCTCTTTCTTGTTGAAAGAGTTGTT-CTAAAGGAGAGAAAT-TAAATGGAAA  458



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22404429562


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5