BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480978
Length=1940
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21230.3 | Symbols: | Basic-leucine zipper (bZIP) transcrip... 2604 0.0
> AT2G21230.3 | Symbols: | Basic-leucine zipper (bZIP) transcription
factor family protein | chr2:9093624-9096347 REVERSE
LENGTH=2014
Length=2014
Score = 2604 bits (1410), Expect = 0.0
Identities = 1766/1928 (92%), Gaps = 63/1928 (3%)
Strand=Plus/Plus
Query 54 agagagagagagaTTCGCTTCTCCATTTCAGACAATCAAAATGGTTGGTGGTGGCGATAC 113
|||||||||||||||| |||| |||||||||| ||||||||||| ||||||||| |||||
Sbjct 101 AGAGAGAGAGAGATTCACTTCCCCATTTCAGAAAATCAAAATGGGTGGTGGTGGTGATAC 160
Query 114 AACAGATACCAATATGATGCAGAGAGTTAATTCTTCTTCCGGTACATCGTCTTCTTCGAT 173
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 161 AACAGATACCAATATGATGCAGAGAGTTAATTCTTCTTCTGGTACATCGTCTTCTTCGAT 220
Query 174 CCCTAAACAGAATCTTCACTTGAATCCTGCTCTTATCCGCTCTCACCACCACTTCCGTCA 233
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 221 CCCTAAACACAATCTTCACTTGAATCCTGCTCTTATCCGCTCTCACCATCACTTCCGTCA 280
Query 234 GCCTTTCACCGGAG---CTCCGTCGCCGATTCCACCCATTTCTCCTTACTCTCAGATCCC 290
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 281 CCCTTTCACCGGAGCTCCTCCACCGCCGATTCCACCCATTTCTCCTTACTCTCAGATCCC 340
Query 291 GGCGACTTTACAACCTAGGCATTCTCGGTCTATGTCGCAACCGTCTTCTTTCTTCTCCTT 350
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 341 GGCGACTTTACAACCTAGACATTCTCGCTCTATGTCGCAACCGTCTTCTTTCTTCTCCTT 400
Query 351 TGATTCATTGCCGCCGTTAAAT-C--C-G---C--CGGTTTCGGTGTCGGTGGAGGAAAA 401
|||||||||||||||||||||| | | | | |||||||||||||||||||||| ||
Sbjct 401 TGATTCATTGCCGCCGTTAAATCCTTCTGCTCCGTCGGTTTCGGTGTCGGTGGAGGAGAA 460
Query 402 AACCGGCGCCGGATTTAGCCCTTC-TCTGCCTCCTTCGCCGTTTACGATGTGTCCTTCTT 460
|||||| ||||||||||| ||||| | ||||||| || |||||||||||||||| |||||
Sbjct 461 AACCGGTGCCGGATTTAGTCCTTCGT-TGCCTCCGTCACCGTTTACGATGTGTCATTCTT 519
Query 461 CTAGCTCTAGGAACGCTGGAGATGGAGAGAATCTACCGCCGAGAAAGTCTCATAGGCGTT 520
|||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 520 CTAGCTCTAGGAACGCCGGAGATGGAGAGAATCTACCTCCGAGAAAGTCGCATAGGCGTT 579
Query 521 CGAATAGTGATGTTACTTTTGGGTTTTGTTCAGTGATGGGTCAGAATCAAAAGTCTCCTC 580
|||||||||||||||||||||||||| ||||| ||||| ||||||||||||| | |||
Sbjct 580 CGAATAGTGATGTTACTTTTGGGTTTAGTTCAATGATGTCTCAGAATCAAAAG--T-CTC 636
Query 581 CTTTGACCCCTTTGAGTTCATTAGAGAGATCGATCTCCGGCGGAGATATTTCAGATTGGT 640
| | ||||||||||| || |||||||||||||| || | ||||| ||||||||||
Sbjct 637 C--T----CCTTTGAGTTCTTTGGAGAGATCGATCTCTGGTGAAGATACATCAGATTGGT 690
Query 641 CTAATTTGGTGAAGGACGAACCAATAGAACGCTTCTTTAAGGGAAGAAAAAACCCACAGA 700
|||||||||||||| | ||||| | |||| |||||| |||||||| |||| ||| ||
Sbjct 691 CTAATTTGGTGAAGAAAGAACCGAGAGAAGGCTTCTACAAGGGAAG--AAAA-CCAGAG- 746
Query 701 G-TGAAGCAGCTATGGACGATGTTTTCACGGCTTATATGAATCTTGAAAACATTGATGTC 759
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 747 GTTGAAGCAGCTATGGACGATGTTTTCACGGCTTATATGAATCTTGATAACATTGATGTC 806
Query 760 TTGAATTCTTTTGGAGGTGAAGATGGAAAGAATGGTAATGAGAATTTGGAGGAGATGGAG 819
|||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||
Sbjct 807 TTGAATTCTTTTGGAGGTGAAGATGGCAAGAATGGGAATGAGAATGTGGAGGAGATGGAG 866
Query 820 AGTAGTAGAGGTAGCGGGACGAAGAAGACAAATGGCGGAAGTAGTAGTGATTCTGAAGGA 879
|||||||||||||| || || |||||||| ||||| ||||||||||||||||||||||||
Sbjct 867 AGTAGTAGAGGTAGTGGTACAAAGAAGACGAATGGTGGAAGTAGTAGTGATTCTGAAGGA 926
Query 880 GAAAGCAGTGCGAGTGGGAATGTGAAGGTTGCGGTGAGTTCTTCTTCTTCAGGCGTGAAG 939
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 927 GATAGCAGTGCGAGTGGGAATGTGAAGGTTGCGTTGAGTTCTTCTTCTTCAGGCGTGAAG 986
Query 940 AGAAGAGCCGGCGGAGACATTGCTCCGACTAGTAGACATTACAGGAGTGTTTCTATGGAT 999
|||||||| || ||||| |||||||| ||| ||||||||||||||||||||||||||||
Sbjct 987 AGAAGAGCAGGTGGAGATATTGCTCCTACTGGTAGACATTACAGGAGTGTTTCTATGGAC 1046
Query 1000 AGTTGTTTCATGGGGAAGTTGAATTTCGGCGATGAATCATCTCTTAAGCTTCCG-C--CT 1056
|||||||||||||||||||||||||||||||| |||||||| || ||||||||| | ||
Sbjct 1047 AGTTGTTTCATGGGGAAGTTGAATTTCGGCGACGAATCATCGCTAAAGCTTCCGCCTTCT 1106
Query 1057 TCATCAGCTAAAGTTTCCCCAACCAATTCAGGTGAAGGGAATTCGAGTGCTTTTAGTGTC 1116
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1107 TCATCAGCTAAAGTTTCCCCAACCAATTCAGGTGAAGGGAATTCAAGTGCTTATAGTGTT 1166
Query 1117 GAATTTGGAAACGGTGACTTTACTGCAGCTGAAATGAAGAAGATTGCAGCCGATGAGAAA 1176
|||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1167 GAATTTGGAAACAGTGAGTTTACTGCAGCTGAAATGAAGAAGATTGCAGCTGATGAGAAA 1226
Query 1177 CTCGCTGAGATTGTAATGGCTGACCCTAAGCGTGTAAAAAGAATCTTGGCGAACCGCGTA 1236
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1227 CTCGCTGAGATTGTAATGGCTGACCCTAAGCGTGTTAAAAGAATCTTGGCGAACCGCGTA 1286
Query 1237 TCTGCTGCACGTTCAAAGGAGAGGAAGACGCGATACATGGCAGAGTTAGAACACAAGGTG 1296
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1287 TCTGCTGCACGTTCAAAGGAGCGGAAGACGCGATACATGGCAGAGTTGGAACACAAGGTG 1346
Query 1297 CAGACACTTCAGACTGAAGCTACTACATTATCGGCTCAGCTCACACATTTGCAGAGAGAT 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1347 CAGACACTTCAGACTGAAGCTACTACATTATCGGCTCAGCTCACACATTTGCAGAGAGAT 1406
Query 1357 TCAATGGGGTTGACTAACCAGAACAGTGAGCTGAAGTTTCGTCTTCAAGCTATGGAGCAG 1416
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TCTATGGGGTTGACAAACCAGAACAGTGAGCTGAAGTTTCGTCTTCAAGCTATGGAGCAG 1466
Query 1417 CAAGCACAACTCCGCGATG-----C---TT-T---------GTCAGAGAAACTGACTGAA 1458
||||||||||||||||||| | || | |||||||||||||| ||||
Sbjct 1467 CAAGCACAACTCCGCGATGGTATGCACATTATCAAAACTCTGTCAGAGAAACTGAATGAA 1526
Query 1459 GAAGTCCAGCGGTTGAAACTGGTCATTGGGGAGCCGAACCGCAGGCAAAGTGGCAGCAGC 1518
||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 1527 GAAGTCCAGCGGTTGAAACTGGTGATAGGGGAGCCGAACCGCAGGCAAAGTGGGAGCAGC 1586
Query 1519 AGCAGCGAATCAAAGACGTCACTAAACCCGGAGATGTTTCAGCAGCTTAGCATAAGCCAG 1578
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1587 AGCAGCGAATCAAAGATGTCACTAAACCCGGAGATGTTTCAGCAGCTTAGCATAAGTCAG 1646
Query 1579 TTACAACACCAGCAGATGCAGCATTCCAATCAGAGTAGCACAATGAAAGCAAAGCACA-T 1637
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1647 TTACAACACCAACAGATGCAGCATTCCAATCAGTGTAGCACAATGAAAGCAAAGCACACT 1706
Query 1638 GTCAAACGAATAGGGTAAGTAAAACCGCGATCCGCAGTT-TCTAGTTACATATATGATAA 1696
|||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1707 -TCAAACGACTAGGGTAAGTAAAACTGCGATCCGCAGTTGTCTAGTTACATATATGATAA 1765
Query 1697 GAATCTTTTGTGCAGAGTTTTGTTTTTGGAAGTTTTAAAGAAACATATATAAAGATTATG 1756
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1766 GAATCTTTTGTGCAGAGTTCTGTTTTTGGAAGTTTTAAAGAAACATATATAAAGATTATG 1825
Query 1757 TCCGGGAAATTCGATTGTATTTCCCGAAACatatatatatatatataGTGGTAACGGAGG 1816
||||||||||| ||| ||||||| |||||||| | | |||||||||||||||| |||||
Sbjct 1826 TCCGGGAAATTTGATCATATTTCCTGAAACATACACACATATATATAGTGGTAATGGAGG 1885
Query 1817 GCTCTCTTTCTGGACCAAGTGATCTTATGTTGTTTTGGTCATATAT--ACCC--TTAGGA 1872
|| ||||||||||||| |||||||||||||||||||||||||||| || | ||||||
Sbjct 1886 ACTTTCTTTCTGGACCAGGTGATCTTATGTTGTTTTGGTCATATATTTACACAGTTAGGA 1945
Query 1873 TTTTATTTCCCTTTGGATTTTGGATTTTGGATAATCTATGAGACAATTCTTAAGGTTGCT 1932
||||||||||||||||||||||||| | | |||||||||||||| |||||||| |
Sbjct 1946 TTTTATTTCCCTTTGGATTTTGGAT-----A-A-TCTATGAGACAATTTTTAAGGTTTAT 1998
Query 1933 ATATATTA 1940
| ||||||
Sbjct 1999 AAATATTA 2006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96083843130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5