BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480981

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21237.1 | Symbols:  | unknown protein; Has 10 Blast hits to...   669    0.0  


> AT2G21237.1 | Symbols:  | unknown protein; Has 10 Blast hits 
to 10 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:9100536-9101215 REVERSE LENGTH=680
Length=680

 Score =  669 bits (362),  Expect = 0.0
 Identities = 470/519 (91%), Gaps = 19/519 (4%)
 Strand=Plus/Plus

Query  1    AACAACAAAATGGTAGAGAAAGCCACAGT-----A----GAGACGCAGCAAGCGG-CACA  50
            |||||||||||| | ||||||||||||||     |    |||||||| ||| ||| ||||
Sbjct  23   AACAACAAAATGATGGAGAAAGCCACAGTGGCGCATGTGGAGACGCATCAA-CGGTCACA  81

Query  51   AGAGATATGGTTTCTTGCCTCCGCAAGAGCCTTCTTGCAAATTCCGAATCCGGGTATTGT  110
            ||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||
Sbjct  82   AGAGATATGGTTTCTTGGCGCCGCAAGAGCCTTCTTGCAAATTCCGAATCCGGGGATTGT  141

Query  111  TAAAGTTTTCGTCCTAAGCAGCTTGATTACGTTCACCTCAGGAATTGCCTTAGTCATTGA  170
             |||||||| |||||||||||||||| ||| |||||||||||||| || |||||||||||
Sbjct  142  CAAAGTTTTTGTCCTAAGCAGCTTGACTACATTCACCTCAGGAATGGCTTTAGTCATTGA  201

Query  171  ATGGATCTGTCACGGAAAGAGTCACACCGGATTTGGGTGGATCATCTACTACGCATTGTT  230
             |||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct  202  GTGGATCTGTCACGGAAAGAGTCACACGGGATTCGGGTGGATCATCTACTATGCATTGTT  261

Query  231  CTTGATGTGTCTTCCTCTTGTCATCTTGATCGGTCTTCATATCCTCGTGC-GTCGCGGCT  289
            |||||||||||||||||||||||||||||||||||||||||| ||||| | | |||||||
Sbjct  262  CTTGATGTGTCTTCCTCTTGTCATCTTGATCGGTCTTCATATTCTCGT-CAGGCGCGGCT  320

Query  290  CAGATCAGATTGTAGATTCAAC-CACAAGCAAAGAGCCATGTGTTGTGCAGAATCAGTGT  348
            ||||||||||||| |||||||| | |||||||||| || ||||| |||||||||||| ||
Sbjct  321  CAGATCAGATTGTGGATTCAACTC-CAAGCAAAGAACCGTGTGTGGTGCAGAATCAGAGT  379

Query  349  ACCGAGA-GTACTAAACGAACTGAAGAAACGGAGAAAAACAGTTGCCAAAGTTTAGCCGT  407
            ||||||| | |||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct  380  ACCGAGACG-ACTAAACGAACTGAAGAAACGGTGAAAAACAGCTGCCAAAGTTTAGCCGT  438

Query  408  TGTGGTTGCTCCGGATGACGAA-AAGATGCCGAGGATAAAACGCGCTGTTTCGTTCCCAT  466
            ||||||||||||||||||| || ||||||||||||||||||||||| || || ||||| |
Sbjct  439  TGTGGTTGCTCCGGATGAC-AAGAAGATGCCGAGGATAAAACGCGCAGTGTCATTCCCGT  497

Query  467  CTCACGGCGAAGTAAGATCATGTCGTACTCGTTAGCAAA  505
            ||||||||||||||||||||||||| |||||||||||||
Sbjct  498  CTCACGGCGAAGTAAGATCATGTCGAACTCGTTAGCAAA  536



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24112390560


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5