BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480982
Length=1196
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21240.1 | Symbols: BPC4, BBR, ATBPC4 | basic pentacysteine ... 1772 0.0
AT4G38910.2 | Symbols: BPC5 | basic pentacysteine 5 | chr4:1814... 475 4e-133
> AT2G21240.1 | Symbols: BPC4, BBR, ATBPC4 | basic pentacysteine
4 | chr2:9101316-9103050 REVERSE LENGTH=1282
Length=1282
Score = 1772 bits (959), Expect = 0.0
Identities = 1124/1203 (93%), Gaps = 14/1203 (1%)
Strand=Plus/Plus
Query 1 tctctctctctctctTCCCTTTGGATCTTTCTTCTCAATCAAAATTTATCCA-TTTGCCC 59
||||||||||||||| |||||||||||||||||||| ||| || ||||||| |||||||
Sbjct 6 TCTCTCTCTCTCTCTACCCTTTGGATCTTTCTTCTCGATC--AA-TTATCCATTTTGCCC 62
Query 60 AGATTTCTTCCACAAGCTCATCAAATTTATCGAATCACAATGTTTGGAATTTGGTTTCAC 119
|||||| ||||| ||||||||| |||| |||||||||||||||||| |||||||||||||
Sbjct 63 AGATTTTTTCCAGAAGCTCATCGAATTCATCGAATCACAATGTTTGAAATTTGGTTTCAC 122
Query 120 TGTTGCTGAGTGTGTGTGGGGGAGAAGCTTGAAAAGTTCtttttttCTCTTTTTGAAGAT 179
||||||||||||||| ||| |||||||||||| |||| | |||| || |||||||||
Sbjct 123 TGTTGCTGAGTGTGTTTGGAGGAGAAGCTTGATTGGTTCGGTGTTTCACTGTTTGAAGAT 182
Query 180 TATAAGAGTTATGGAGAATGGTGGTCAGTATGATAATGGGCGGTTCAAGCCCGATTACTT 239
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 183 TATAAGAGTTATGGAGAATGGTGGTCAGTATGATAATGCGCGGTTCAAGCCCGATTACTT 242
Query 240 CAAAGGTGCACAATCTATGTGGAATATGATGCCTCAGCATCAGATTAAGGAACAACATAA 299
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 243 CAAAGGTGCACAATCTATGTGGAATATGATTCCCCAGCATCAGATTAAGGAACAACATAA 302
Query 300 TGCCTTGGTGATGAATAAGAAGATCATGTCTATCCTTGCCGAGAGGGACGCTGCTGTACA 359
||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 303 TGCGTTGGTGATGAATAAGAAGATCATGTCCATCCTTGCTGAGAGAGACGCTGCTGTACA 362
Query 360 TGAAAGGAATCAAGCTGTCTCTGCTAAAAAGGAAGCAGTAGCTGCTCGGGACGAAGCCCT 419
|||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 363 TGAAAGAAATCAAGCTGTCTCTGCTAAAAAGGAAGCTGTCGCTGCTCGGGACGAAGCGCT 422
Query 420 TCAGCAACGGGACAAAGCTCTTTCTGAAAGAGATAAAGCATTGATAGAGAGAGACAATGC 479
||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 423 TCAGCAACGTGACAAAGCTCTTTCTGAGAGAGATAAAGCTTTGATAGAGAGAGATAATGC 482
Query 480 GTATGCTGCGCTTCAACACCATGAAAATAGTCTCAACTTTGCTTTGTCTGGTGGGAAGCG 539
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 483 TTATGCTGCTCTTCAACACCATGAAAATAGTCTCAACTTTGCTTTGTCTGGTGGGAAGTG 542
Query 540 TGTTGATGGAGATGATTGTTTCGGTATTGGAGAACCCCACAAACTCCATGTCGTCCCTTT 599
||||||||||||||||||||| |||||||| |||||||||||||| | ||| |||||||
Sbjct 543 TGTTGATGGAGATGATTGTTTTGGTATTGGGGAACCCCACAAACTTGAAGTCTTCCCTTT 602
Query 600 ATCAACTATTCCGCCCGAGGTTACCAATGGTACGAA---GGTG-ACAAAAAGGAAGAAGG 655
|||||||||||||| ||||||| ||| ||||| |||| || ||||||||||| |
Sbjct 603 GTCAACTATTCCGCCTGAGGTTA-CAA--ACACGAAGGTGGTGAAC-AAAAGGAAGAAAG 658
Query 656 AGAACAAGCAGGGACAATCAAAGGTGAAGAAAGTGGGTGAAGATCTCAACCGTCGAGTTG 715
||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 659 AGAACAAGCAGGGACTATCAAAGGTGAAAAAAGTGGGTGAAGATCTGAACCGTCGAGTTC 718
Query 716 CTGCTCCTGGAAAGAAATCTAGAACAGATTGGGACAGTCAAGATGTCGGTTTGAACTTAG 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CTGCTCCTGGAAAGAAATCTAGAACAGATTGGGACAGTCAAGATGTCGGTTTGAACTTAG 778
Query 776 TCACCTTCGATGAGACGACAATGCCTGTACCCATGTGTACATGCACAGGCTCTGCTCATC 835
|||||||||||||||||||||||||||||||||||||| | |||||||||||| | | ||
Sbjct 779 TCACCTTCGATGAGACGACAATGCCTGTACCCATGTGTTCGTGCACAGGCTCTACGCGTC 838
Query 836 AGTGTTACAAATGGGGAAATGGAGGCTGGCAATCATCTTGCTGCACAACCACCTTATCCC 895
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 839 AGTGTTACAAATGGGGAAATGGCGGCTGGCAATCGTCTTGCTGCACAACCACCTTATCCC 898
Query 896 AGTATCCATTACCGCAGATGCCAAACAAGAGGCATTCTCGGATGGGCGGTAGGAAAATGA 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AGTATCCATTACCGCAGATGCCAAACAAGAGGCATTCTCGGATGGGCGGTAGGAAAATGA 958
Query 956 GTGGAAACGTTTTCTCGAGATTACTCAGCCGTTTAGCAGCAGAAGGATATGATCTCTCGT 1015
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 959 GCGGAAACGTTTTCTCGAGATTACTCAGCCGTTTATCAGCAGAAGGATATGATCTCTCGT 1018
Query 1016 GTCCTGTTGATCTTAAAGACTATTGGGCTAGGCACGGGACAAACCGCTACATCACTATCA 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GTCCTGTTGATCTTAAAGACTATTGGGCTAGGCACGGGACAAACCGCTACATCACTATCA 1078
Query 1076 AGTAGCCTCTGTTGTCTACACAGTCCAAGTATGTTTATCTCGTCTTCTTAAGATTAGGTG 1135
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1079 AGTAGCCTCTGTTGTTTACACAGTCCAAGTATGTTTCTCTCGTCTTCTTAAGATTAGGTG 1138
Query 1136 TTGTCTTTGTCTG-ATTGTCTATAGTT-GTTCGTTGTTGTGTATGGTAAAACCATTATTA 1193
|||||||||||| |||||| |||||| |||| ||||||||||||||||||||||| |||
Sbjct 1139 TTGTCTTTGTCTTTATTGTCCATAGTTTGTTCTTTGTTGTGTATGGTAAAACCATTGTTA 1198
Query 1194 TGT 1196
|||
Sbjct 1199 TGT 1201
> AT4G38910.2 | Symbols: BPC5 | basic pentacysteine 5 | chr4:18145351-18146873
REVERSE LENGTH=1068
Length=1068
Score = 475 bits (257), Expect = 4e-133
Identities = 710/917 (77%), Gaps = 78/917 (9%)
Strand=Plus/Plus
Query 182 TAAGAGTTATGGAGAATGGTGGTCAGTATGATAATGGGCGGTTCAAGCCCGATTACTTCA 241
|||||| ||||||| |||||| |||||||| |||||||| | |||||||||||||| ||
Sbjct 83 TAAGAG-GATGGAGAGTGGTGGGCAGTATGAAAATGGGCGCTACAAGCCCGATTACTACA 141
Query 242 AAGGTGCACAATCTATGTGGAATATGATGCCTCAGCATCAGATTAAGGAACAACATAATG 301
|||| ||||||| ||| |||| ||||| | | | | | | ||||| ||||||||||
Sbjct 142 AAGGAACACAATC--TGT-GAATGTGATG-C-C-G-A--A-A--AAGGAGCAACATAATG 189
Query 302 CCTTGGTGATGAATAAGAAGATCATGTCTATCCTTGCCGAGAGGGACGCTGCTGTAC-AT 360
| ||||||||||||||||||||||| || |||||||| ||||||||||| ||||| | |
Sbjct 190 CATTGGTGATGAATAAGAAGATCATCTCCATCCTTGCTGAGAGGGACGCAGCTGT-CAAG 248
Query 361 GAAAGGAATC-AAGCTGTCT-CTGCTAA-AAAGGAAGCAGTAG-CTGCTCGGGACGAAGC 416
|||| ||| | |||| || | | || || ||||||||| ||| || |||| || |||||
Sbjct 249 GAAA-GAAACGAAGCGGT-TGCAGC-AACTAAGGAAGCATTAGCCT-CTCGTGATGAAGC 304
Query 417 CCTTCAGCAACGGGACAAAGCTCTTTCTGAAAGAGATAAAGCAT-TGATAGAGAGAGACA 475
||| |||| |||||||||||||| |||||||||||||| || | | || |||| ||| |
Sbjct 305 ACTTGAGCAGCGGGACAAAGCTCTCTCTGAAAGAGATAATGC-TATCATGGAGACAGA-A 362
Query 476 A-TGCG-TATGCTGCGCTTCAACACCATGAAAATAGTCTCAACTTTGCTTTGTCTG-GTG 532
| |||| || ||| |||| | ||| |||||| | ||| |||| |||||| | |||
Sbjct 363 AGTGCGTTA-AATGCTCTTCGATACCGTGAAAACAATCTTAACTACATTTTGTC-GTGTG 420
Query 533 GGAAGCGTGTTGATGGAGATGATTGTTTCGGT-ATTGGAGAACCCCAC-AAACTCCATGT 590
||||| | || | | | |||| | | || |||| |||| | || ||
Sbjct 421 CCAAGCGCGGTGGTTCCCA--AAGGTTT--ATAACTGAAGAAAGCCACTTACCT-AAT-C 474
Query 591 CGT-CCCTTTATCAACTATTCCGCCCGAGGTTA-CCAATGGTACGAAG-GTGACAAAAAG 647
| | |||| ||||||||||||| || || | | |||| ||| || ||| |||||
Sbjct 475 CTTCCCCTATATCAACTATTCCACCTGAAG-CAGCCAA---CACG-AGACCGACCAAAAG 529
Query 648 GAAGAAGGAGAACAAGCAGGGACAATCAAAGGTGAAGAAAGTGGGTGAAGATCTCAACCG 707
|||||| |||| ||||||||| ||| | | ||| |||| || ||||| |||||
Sbjct 530 GAAGAAAGAGAGCAAGCAGGG------AAA---G-A-AAA-TGGGCGAGGATCTGAACCG 577
Query 708 TCGAGTTGCTGCTCCTGGAAAG-AAATCTAGAACA-GATTGGGACAGTCAA-GATGTCGG 764
|| ||||||| |||| |||||| ||| | |||| | |||||||||||| || ||||||
Sbjct 578 TCCAGTTGCTTCTCCCGGAAAGAAAAGC-AGAA-AGGATTGGGACAGT-AACGATGTC-- 632
Query 765 TTTGAACTTAGTCACCTTCGATGAGACGACAATGCCTGTACCCATGTGTACATGCACAGG 824
| ||||||| |||||||||| ||||||||| || |||||||| || ||||| ||
Sbjct 633 ------C-TAGTCACGTTCGATGAGATGACAATGCCAGTGCCCATGTGCACTTGCACCGG 685
Query 825 CTCTGCTCATCAGTGTTACAAATGGGGAAATGGAGGCTGGCAATCATCTTGCTGCACAAC 884
|||||| ||||||||| || ||||| ||||| ||||||||||||||||||||||||||
Sbjct 686 GACTGCTCGTCAGTGTTATAAGTGGGGCAATGGCGGCTGGCAATCATCTTGCTGCACAAC 745
Query 885 CACCTTATCCCAGTATCCATTACCGCAGATGCCAAACAAGAGGCATTCTCG-GATGGGCG 943
||| || || ||||||| | |||||||||||||||||| ||||||| || | ||| ||
Sbjct 746 CACTTTGTCTGAGTATCCGCTCCCGCAGATGCCAAACAAGCGGCATTCCCGAGTTGG-CG 804
Query 944 GTAGGAAAATGAGTGGAAACGTTTTCTCGAGATTACTCAGCCGTTTAGCAGCAGAAGGAT 1003
| |||||||||||||||| || ||||| || ||||| || |||||||| | |||||
Sbjct 805 GCAGGAAAATGAGTGGAAGTGTCTTCTCCAGGTTACTTAGTCGTTTAGCTGGTGAAGGGC 864
Query 1004 ATGATCTCTCGTGTCCTGTTGATCTTAAAGA-CTATTGGGCTAGGCACGGGACAAACCGC 1062
|||| || || | ||| |||||||| || || |||||||||||||||||| || ||||||
Sbjct 865 ATGAGCTTTCCTCTCCGGTTGATCTCAA-GAACTATTGGGCTAGGCACGGCACCAACCGC 923
Query 1063 TACATCACTATCAAGTA 1079
|||||||||||||||||
Sbjct 924 TACATCACTATCAAGTA 940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58734637650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5