BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480987
Length=1244
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21270.3 | Symbols: UFD1 | ubiquitin fusion degradation 1 | ... 1919 0.0
AT4G38930.2 | Symbols: | Ubiquitin fusion degradation UFD1 fam... 734 0.0
> AT2G21270.3 | Symbols: UFD1 | ubiquitin fusion degradation 1
| chr2:9107566-9110261 FORWARD LENGTH=1547
Length=1547
Score = 1919 bits (1039), Expect = 0.0
Identities = 1145/1196 (96%), Gaps = 7/1196 (1%)
Strand=Plus/Plus
Query 52 GTTGCCATTCGTTAACTTAATCTTTTTGTGTACTACCACCAATAACTATGTTTTTCGATG 111
||||||||| ||||||||| ||| || || ||||||||||||||||||||||||||||||
Sbjct 292 GTTGCCATTTGTTAACTTACTCTGTTAGTCTACTACCACCAATAACTATGTTTTTCGATG 351
Query 112 GATACCATTATCATGGAACAACCTTTGAGCAGAGTTATCGGTGTTATCCGGCATCTTTTA 171
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 352 GATACCATTATCATGGAACAACCTTTGAGCAGAGTTACCGGTGTTATCCGGCATCTTTTA 411
Query 172 TCGACAAGCCACAAATTGAAAGTGGTGACAAGATTATAATGCCACCATCAGCCCTTGATC 231
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TCGACAAGCCACAACTTGAAAGTGGTGACAAGATTATAATGCCACCATCAGCCCTTGATC 471
Query 232 GTCTAGCCTCTTTGCATATTGACTATCCGATGCTGTTTGAGGTTCGTAATGCTGGAATTG 291
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 472 GTCTAGCCTCTTTGCATATTGACTATCCGATGCTGTTTGAGCTTCGTAATGCTGGAATTG 531
Query 292 AACGTGTTACGCACTGTGGAGTCCTTGAGTTCATTGCAGAAGAAGGCATGATTTACATGC 351
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 AACGTGTTACACACTGTGGAGTCCTTGAGTTCATTGCAGAAGAAGGCATGATTTACATGC 591
Query 352 CATATTGGATGATGCAAAATCTGCTGTTGCAAGAAGGAGACATTGTGAGAGTTAGAAATG 411
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 592 CATATTGGATGATGCAGAATCTGCTGCTGCAAGAAGGAGACATTGTGAGAGTTAGAAATG 651
Query 412 TCACTCTTCCTAAGGGAACTTACGTTAAATTACAGCCCCACACAACAGACTTCCTGGATA 471
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 652 TCACTCTTCCAAAGGGAACTTACGTTAAACTACAGCCCCACACAACAGACTTCCTGGATA 711
Query 472 TATCCAACCCGAAAGCCATCTTGGAGACTGCTTTGAGAAATTATTCATGCCTTACCACTG 531
|||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 712 TATCCAACCCGAAAGCCATCTTGGAGACTGCTTTGAGAAATTATTCATGCCTAACTAGTG 771
Query 532 GGGATAGCATTATGGTTCCATACAACAATAAGAAGTACTTCATAGATATAGTTGAAACAA 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 GGGATAGCATTATGGTTCCATACAACAATAAGAAGTACTTCATAGATATAGTTGAAACAA 831
Query 592 AGCCTGCTAACGCAATCAGCATCATCGAAACAGACTGTGAAGTTGATTTCGCACCTCCCC 651
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 832 AGCCTGCTAACGCAATCAGCATCATAGAAACAGACTGTGAGGTTGATTTCGCACCTCCCC 891
Query 652 TTGATTACAAGGAGCCTGAACGTCCCACTGCACCTGCTGCAGCTAAGGGTCCAGCAAAAG 711
| |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||
Sbjct 892 TCGATTACAAGGAGCCTGAACGTCCCACAGCACCTTCTGCAGCTAAGGGTCCGGCAAAAG 951
Query 712 CTGAGGAGGTTGTGGCTGAACCTGAACCAAAGTTCAACCCTTTCACGGGATCTGGAAGAC 771
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 952 CTGAGGAGGTTGTGGATGAACCTGAACCAAAGTTCAACCCTTTCACCGGATCTGGAAGAC 1011
Query 772 GGTTAGATGGGAGACCTCTTGCCTATGAGCCGGCGCCAGCCTCTAGCTCAAAAGACAAAC 831
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1012 GGTTAGATGGGAGACCTCTTGCCTATGAGCCAGCGCCAGCCTCTAGCTCAAAAGGCAAAC 1071
Query 832 AGCCTGTTGTCGCTAATGGTAATGGACAGTCATCTGTAGCAAGTAGCTCAGAGAAAGCTA 891
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 AACCTGTTGTCGCTAATGGTAATGGACAGTCATCTGTAGCAAGTAGCTCAGAGAAAGCTA 1131
Query 892 CGCGAGCTCAGGGAAAGCTTGTATTTGGGGCCAACGCAAACCGTGTTCCAAAAGAAGCTG 951
| ||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||
Sbjct 1132 CACGAGCTCAGGGAAAGCTTGTATTTGGGGCTAACGGAAACCGTGCTCCAAAAGAAGCTG 1191
Query 952 CTCCTAAAGTTGGAGCTGCAAAAGAGACAAAGCAAGAGGAACAGGAGAAGAAAGACGAGC 1011
|||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1192 CTCCGAAAGTTGGAGCTGCAAAAGAGACAAAGAAAGAGGAACAAGAGAAGAAAGACGAGC 1251
Query 1012 CCAAGTTTCAAGCTTTCTCTGGGAAGAAGTATTCATTGAGGGGTTGATCAACTCAGACAA 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1252 CCAAGTTTCAAGCTTTCTCTGGGAAGAAGTATTCATTGAGGGGTTGATCAACTCACACAA 1311
Query 1072 TCGGTCTGCTCAGTCTATTTATGATCCTCTCATGTTGTGTACTATATAAAGACTAAG-AA 1130
| ||||| |||||||||||||||| ||||||||||||||||||| | ||| || ||| ||
Sbjct 1312 TGGGTCTACTCAGTCTATTTATGA-CCTCTCATGTTGTGTACTA-A-AAATAC-AAGGAA 1367
Query 1131 AACAAATAAGTGAATAAATCTCTGGCTTGTCTTGACGAGGCTTGTTTTCTTTATCAGATT 1190
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1368 AACAAATAAGTGAATAAATCTCTGGCTCCTCTTGACGCGGCTTGTTTTCTTTATCAGATT 1427
Query 1191 -A-TGCAACTTTCTACAATTCTCTGCTCTTTTATAATCTTACTGCAGGATATTAGA 1244
| |||||||||||||||||||||||||||||||| |||||||| ||||||| |||
Sbjct 1428 CAATGCAACTTTCTACAATTCTCTGCTCTTTTATATTCTTACTGTAGGATATAAGA 1483
> AT4G38930.2 | Symbols: | Ubiquitin fusion degradation UFD1 family
protein | chr4:18149534-18151776 FORWARD LENGTH=1197
Length=1197
Score = 734 bits (397), Expect = 0.0
Identities = 611/714 (86%), Gaps = 15/714 (2%)
Strand=Plus/Plus
Query 99 ATGTTTTTCGATGGATAC-CATTATCATGGAACAACCTTTGAGCAGAGTTATCGGTGTTA 157
||||||| |||||||||| | |||||||||||| ||||||||||||| ||| ||||||||
Sbjct 90 ATGTTTTACGATGGATACGC-TTATCATGGAACTACCTTTGAGCAGACTTACCGGTGTTA 148
Query 158 TCCGGCATCTTTTATCGACAAGCCACAAATTGAAAGTGGTGACAAGATTATAATGCCACC 217
||| |||| ||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 149 TCCCTCATCCTTTATTGATAAGCCTCAAATTGAAAGTGGTGACAAGATTATAATGCCACC 208
Query 218 ATCAGCCCTTGATCGTCTAGCCTCTTTGCATATTGACTATCCGATGCTGTTTGAGGTTCG 277
||||||||||||||||||||| |||||||| ||||| ||||| ||||| ||||| ||||
Sbjct 209 ATCAGCCCTTGATCGTCTAGCTTCTTTGCAGATTGATTATCCAATGCTCTTTGAACTTCG 268
Query 278 TAATGCTGGAATTGA-ACGTGTTACGCACTGTGGAGTCCTTGAGTTCATTGCAGAAGAAG 336
||||||| || || | || || | ||||| ||||||||||||||||| ||||||||||
Sbjct 269 TAATGCTTCAACAGATA-GTTTTTCTCACTGCGGAGTCCTTGAGTTCATCGCAGAAGAAG 327
Query 337 GCATGATTTACATGCCATATTGGATGATGCAAAATCTGCTGTTGCAAGAAGGAGACATTG 396
|| |||||||||| || || ||||||||||| ||| |||||||||||||||||||||| |
Sbjct 328 GCGTGATTTACATTCCCTACTGGATGATGCAGAATTTGCTGTTGCAAGAAGGAGACATGG 387
Query 397 TGAGAGTTAGAAATGTCACTCTTCCTAAGGGAACTTACGTTAAATTACAGCCCCACACAA 456
||||||||||||||||||||||||| |||||||| ||||| ||| | || ||||||||||
Sbjct 388 TGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACCTACGTGAAACTGCAACCCCACACAA 447
Query 457 CAGACTTCCTGGATATATCCAACCCGAAAGCCATCTTGGAGACTGCTTTGAGAAATTATT 516
||||||| || |||||| | ||||||||||||||||||||||| || ||||| || ||||
Sbjct 448 CAGACTTTCTCGATATAGCTAACCCGAAAGCCATCTTGGAGACCGCATTGAGGAACTATT 507
Query 517 CATGCCTTACCACTGGG-GATAGCATTATGGTTCCATACAACAATAAGAAGTACTTCATA 575
|||| || || | || |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 508 CATGTCTAACGG-TCGGAGATAGCATTATGGTCCCATACAACAATAAGAAATACTTCATA 566
Query 576 GATATAGTTGAAACAAAGCCTGCTAACGCAATCAGCATCATCGAAACAGACTGTGAAGTT 635
|| ||||| || |||||||| |||| | || |||||||| ||||| || || || |||
Sbjct 567 GACATAGTGGAGGCAAAGCCTTCTAATGGTATTAGCATCATTGAAACTGATTGCGAGGTT 626
Query 636 GATTTCGCACCTCCCCTTGATTACAAGGAGCCTGAACGTCCCACT-GCACCTGCTGCAGC 694
||||||||||||||||||||||||||||| || ||||| || | ||||||||| ||||
Sbjct 627 GATTTCGCACCTCCCCTTGATTACAAGGAACCCGAACGACCTG-TAGCACCTGCTCCAGC 685
Query 695 TAAGGGTCCAGCAAAAGCTGAGGAGGTTG-TG-G-CTGAACCTGAACCAAAGTTCAACCC 751
|| ||| |||||||||| ||||||||| || | ||||| | ||||||||||| |||||
Sbjct 686 CAAAGGTGAAGCAAAAGCTAAGGAGGTTGATGTGGCTGAAGCAGAACCAAAGTTTAACCC 745
Query 752 TTTCACGGGATCTGGAAGACGGTTAGATGGGA-GACCTCT-TGCCTATGAGCCG 803
||||||||| || |||||||| || ||||| | ||||| | | ||||||| |||
Sbjct 746 TTTCACGGGTTCGGGAAGACGTTTGGATGG-ACGACCTTTAT-CCTATGAACCG 797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61144263810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5