BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg480987 Length=1244 Score E Sequences producing significant alignments: (Bits) Value AT2G21270.3 | Symbols: UFD1 | ubiquitin fusion degradation 1 | ... 1919 0.0 AT4G38930.2 | Symbols: | Ubiquitin fusion degradation UFD1 fam... 734 0.0 > AT2G21270.3 | Symbols: UFD1 | ubiquitin fusion degradation 1 | chr2:9107566-9110261 FORWARD LENGTH=1547 Length=1547 Score = 1919 bits (1039), Expect = 0.0 Identities = 1145/1196 (96%), Gaps = 7/1196 (1%) Strand=Plus/Plus Query 52 GTTGCCATTCGTTAACTTAATCTTTTTGTGTACTACCACCAATAACTATGTTTTTCGATG 111 ||||||||| ||||||||| ||| || || |||||||||||||||||||||||||||||| Sbjct 292 GTTGCCATTTGTTAACTTACTCTGTTAGTCTACTACCACCAATAACTATGTTTTTCGATG 351 Query 112 GATACCATTATCATGGAACAACCTTTGAGCAGAGTTATCGGTGTTATCCGGCATCTTTTA 171 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 352 GATACCATTATCATGGAACAACCTTTGAGCAGAGTTACCGGTGTTATCCGGCATCTTTTA 411 Query 172 TCGACAAGCCACAAATTGAAAGTGGTGACAAGATTATAATGCCACCATCAGCCCTTGATC 231 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 412 TCGACAAGCCACAACTTGAAAGTGGTGACAAGATTATAATGCCACCATCAGCCCTTGATC 471 Query 232 GTCTAGCCTCTTTGCATATTGACTATCCGATGCTGTTTGAGGTTCGTAATGCTGGAATTG 291 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 472 GTCTAGCCTCTTTGCATATTGACTATCCGATGCTGTTTGAGCTTCGTAATGCTGGAATTG 531 Query 292 AACGTGTTACGCACTGTGGAGTCCTTGAGTTCATTGCAGAAGAAGGCATGATTTACATGC 351 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 532 AACGTGTTACACACTGTGGAGTCCTTGAGTTCATTGCAGAAGAAGGCATGATTTACATGC 591 Query 352 CATATTGGATGATGCAAAATCTGCTGTTGCAAGAAGGAGACATTGTGAGAGTTAGAAATG 411 |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 592 CATATTGGATGATGCAGAATCTGCTGCTGCAAGAAGGAGACATTGTGAGAGTTAGAAATG 651 Query 412 TCACTCTTCCTAAGGGAACTTACGTTAAATTACAGCCCCACACAACAGACTTCCTGGATA 471 |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 652 TCACTCTTCCAAAGGGAACTTACGTTAAACTACAGCCCCACACAACAGACTTCCTGGATA 711 Query 472 TATCCAACCCGAAAGCCATCTTGGAGACTGCTTTGAGAAATTATTCATGCCTTACCACTG 531 |||||||||||||||||||||||||||||||||||||||||||||||||||| || | || Sbjct 712 TATCCAACCCGAAAGCCATCTTGGAGACTGCTTTGAGAAATTATTCATGCCTAACTAGTG 771 Query 532 GGGATAGCATTATGGTTCCATACAACAATAAGAAGTACTTCATAGATATAGTTGAAACAA 591 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 772 GGGATAGCATTATGGTTCCATACAACAATAAGAAGTACTTCATAGATATAGTTGAAACAA 831 Query 592 AGCCTGCTAACGCAATCAGCATCATCGAAACAGACTGTGAAGTTGATTTCGCACCTCCCC 651 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 832 AGCCTGCTAACGCAATCAGCATCATAGAAACAGACTGTGAGGTTGATTTCGCACCTCCCC 891 Query 652 TTGATTACAAGGAGCCTGAACGTCCCACTGCACCTGCTGCAGCTAAGGGTCCAGCAAAAG 711 | |||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||| Sbjct 892 TCGATTACAAGGAGCCTGAACGTCCCACAGCACCTTCTGCAGCTAAGGGTCCGGCAAAAG 951 Query 712 CTGAGGAGGTTGTGGCTGAACCTGAACCAAAGTTCAACCCTTTCACGGGATCTGGAAGAC 771 ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 952 CTGAGGAGGTTGTGGATGAACCTGAACCAAAGTTCAACCCTTTCACCGGATCTGGAAGAC 1011 Query 772 GGTTAGATGGGAGACCTCTTGCCTATGAGCCGGCGCCAGCCTCTAGCTCAAAAGACAAAC 831 ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct 1012 GGTTAGATGGGAGACCTCTTGCCTATGAGCCAGCGCCAGCCTCTAGCTCAAAAGGCAAAC 1071 Query 832 AGCCTGTTGTCGCTAATGGTAATGGACAGTCATCTGTAGCAAGTAGCTCAGAGAAAGCTA 891 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1072 AACCTGTTGTCGCTAATGGTAATGGACAGTCATCTGTAGCAAGTAGCTCAGAGAAAGCTA 1131 Query 892 CGCGAGCTCAGGGAAAGCTTGTATTTGGGGCCAACGCAAACCGTGTTCCAAAAGAAGCTG 951 | ||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||| Sbjct 1132 CACGAGCTCAGGGAAAGCTTGTATTTGGGGCTAACGGAAACCGTGCTCCAAAAGAAGCTG 1191 Query 952 CTCCTAAAGTTGGAGCTGCAAAAGAGACAAAGCAAGAGGAACAGGAGAAGAAAGACGAGC 1011 |||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||| Sbjct 1192 CTCCGAAAGTTGGAGCTGCAAAAGAGACAAAGAAAGAGGAACAAGAGAAGAAAGACGAGC 1251 Query 1012 CCAAGTTTCAAGCTTTCTCTGGGAAGAAGTATTCATTGAGGGGTTGATCAACTCAGACAA 1071 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1252 CCAAGTTTCAAGCTTTCTCTGGGAAGAAGTATTCATTGAGGGGTTGATCAACTCACACAA 1311 Query 1072 TCGGTCTGCTCAGTCTATTTATGATCCTCTCATGTTGTGTACTATATAAAGACTAAG-AA 1130 | ||||| |||||||||||||||| ||||||||||||||||||| | ||| || ||| || Sbjct 1312 TGGGTCTACTCAGTCTATTTATGA-CCTCTCATGTTGTGTACTA-A-AAATAC-AAGGAA 1367 Query 1131 AACAAATAAGTGAATAAATCTCTGGCTTGTCTTGACGAGGCTTGTTTTCTTTATCAGATT 1190 ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 1368 AACAAATAAGTGAATAAATCTCTGGCTCCTCTTGACGCGGCTTGTTTTCTTTATCAGATT 1427 Query 1191 -A-TGCAACTTTCTACAATTCTCTGCTCTTTTATAATCTTACTGCAGGATATTAGA 1244 | |||||||||||||||||||||||||||||||| |||||||| ||||||| ||| Sbjct 1428 CAATGCAACTTTCTACAATTCTCTGCTCTTTTATATTCTTACTGTAGGATATAAGA 1483 > AT4G38930.2 | Symbols: | Ubiquitin fusion degradation UFD1 family protein | chr4:18149534-18151776 FORWARD LENGTH=1197 Length=1197 Score = 734 bits (397), Expect = 0.0 Identities = 611/714 (86%), Gaps = 15/714 (2%) Strand=Plus/Plus Query 99 ATGTTTTTCGATGGATAC-CATTATCATGGAACAACCTTTGAGCAGAGTTATCGGTGTTA 157 ||||||| |||||||||| | |||||||||||| ||||||||||||| ||| |||||||| Sbjct 90 ATGTTTTACGATGGATACGC-TTATCATGGAACTACCTTTGAGCAGACTTACCGGTGTTA 148 Query 158 TCCGGCATCTTTTATCGACAAGCCACAAATTGAAAGTGGTGACAAGATTATAATGCCACC 217 ||| |||| ||||| || ||||| ||||||||||||||||||||||||||||||||||| Sbjct 149 TCCCTCATCCTTTATTGATAAGCCTCAAATTGAAAGTGGTGACAAGATTATAATGCCACC 208 Query 218 ATCAGCCCTTGATCGTCTAGCCTCTTTGCATATTGACTATCCGATGCTGTTTGAGGTTCG 277 ||||||||||||||||||||| |||||||| ||||| ||||| ||||| ||||| |||| Sbjct 209 ATCAGCCCTTGATCGTCTAGCTTCTTTGCAGATTGATTATCCAATGCTCTTTGAACTTCG 268 Query 278 TAATGCTGGAATTGA-ACGTGTTACGCACTGTGGAGTCCTTGAGTTCATTGCAGAAGAAG 336 ||||||| || || | || || | ||||| ||||||||||||||||| |||||||||| Sbjct 269 TAATGCTTCAACAGATA-GTTTTTCTCACTGCGGAGTCCTTGAGTTCATCGCAGAAGAAG 327 Query 337 GCATGATTTACATGCCATATTGGATGATGCAAAATCTGCTGTTGCAAGAAGGAGACATTG 396 || |||||||||| || || ||||||||||| ||| |||||||||||||||||||||| | Sbjct 328 GCGTGATTTACATTCCCTACTGGATGATGCAGAATTTGCTGTTGCAAGAAGGAGACATGG 387 Query 397 TGAGAGTTAGAAATGTCACTCTTCCTAAGGGAACTTACGTTAAATTACAGCCCCACACAA 456 ||||||||||||||||||||||||| |||||||| ||||| ||| | || |||||||||| Sbjct 388 TGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACCTACGTGAAACTGCAACCCCACACAA 447 Query 457 CAGACTTCCTGGATATATCCAACCCGAAAGCCATCTTGGAGACTGCTTTGAGAAATTATT 516 ||||||| || |||||| | ||||||||||||||||||||||| || ||||| || |||| Sbjct 448 CAGACTTTCTCGATATAGCTAACCCGAAAGCCATCTTGGAGACCGCATTGAGGAACTATT 507 Query 517 CATGCCTTACCACTGGG-GATAGCATTATGGTTCCATACAACAATAAGAAGTACTTCATA 575 |||| || || | || |||||||||||||| ||||||||||||||||| ||||||||| Sbjct 508 CATGTCTAACGG-TCGGAGATAGCATTATGGTCCCATACAACAATAAGAAATACTTCATA 566 Query 576 GATATAGTTGAAACAAAGCCTGCTAACGCAATCAGCATCATCGAAACAGACTGTGAAGTT 635 || ||||| || |||||||| |||| | || |||||||| ||||| || || || ||| Sbjct 567 GACATAGTGGAGGCAAAGCCTTCTAATGGTATTAGCATCATTGAAACTGATTGCGAGGTT 626 Query 636 GATTTCGCACCTCCCCTTGATTACAAGGAGCCTGAACGTCCCACT-GCACCTGCTGCAGC 694 ||||||||||||||||||||||||||||| || ||||| || | ||||||||| |||| Sbjct 627 GATTTCGCACCTCCCCTTGATTACAAGGAACCCGAACGACCTG-TAGCACCTGCTCCAGC 685 Query 695 TAAGGGTCCAGCAAAAGCTGAGGAGGTTG-TG-G-CTGAACCTGAACCAAAGTTCAACCC 751 || ||| |||||||||| ||||||||| || | ||||| | ||||||||||| ||||| Sbjct 686 CAAAGGTGAAGCAAAAGCTAAGGAGGTTGATGTGGCTGAAGCAGAACCAAAGTTTAACCC 745 Query 752 TTTCACGGGATCTGGAAGACGGTTAGATGGGA-GACCTCT-TGCCTATGAGCCG 803 ||||||||| || |||||||| || ||||| | ||||| | | ||||||| ||| Sbjct 746 TTTCACGGGTTCGGGAAGACGTTTGGATGG-ACGACCTTTAT-CCTATGAACCG 797 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61144263810 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5