BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480991

Length=352
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21290.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   459    1e-128


> AT2G21290.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; 
EXPRESSED DURING: 13 growth stages; Has 63 Blast hits 
to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:9112856-9113330 FORWARD 
LENGTH=475
Length=475

 Score =  459 bits (248),  Expect = 1e-128
 Identities = 307/333 (92%), Gaps = 14/333 (4%)
 Strand=Plus/Plus

Query  1    GAGGACGAGAGTGTGTGAGAGAA-A-GAGATGGCGGCGATGCAGTGGTGCGGCGCGATGA  58
            |||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct  5    GAGGACGAGAGTGTGTGAGA-AAGAGGAGATGGCGGCGATGCAGTGGTGCGGCGCGATGA  63

Query  59   CACGACGGATTCTGATGACGCAGCG---A---GCA--T-TGACTTCTCCGGCGAGGTATT  109
            ||||||||||| |||||||||||||   |   |||  | ||| || | ||||||||||||
Sbjct  64   CACGACGGATTATGATGACGCAGCGAACATCTGCAGCTCTGAATTGTTCGGCGAGGTATT  123

Query  110  CTTCGTTATCTCCGGCG-GCTTTAGCTCCGGTGGCATCGGAAATGGATTTGTGTGGGAGA  168
            | ||||||||||||||| | |  |||||||| || |||||||||||||||||||||||||
Sbjct  124  CATCGTTATCTCCGGCGTG-TGCAGCTCCGGCGGTATCGGAAATGGATTTGTGTGGGAGA  182

Query  169  GGAGATAAGAAGACGAAGAAAGGGAAAAGATTCAAAGGATCGTACGGGAATTCGAGAGGG  228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  183  GGAGATAAGAAGACGAAGAAAGGGAAAAGATTCAAAGGATCGTACGGGAATTCGAGAGGG  242

Query  229  AAGAAGCAGAAGATGATTGAGAGAATCAAAGACAAGCTTGAGGTTCCCAGGTCTACTCCT  288
            ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  243  AAGAAACAGAAGATGATTGAGAGAATCAAAGACAAGCTTGAGCTTCCCAGGTCTACTCCT  302

Query  289  TGGCCTCTCCCTTTCAAGCTCATCTGAATCTCT  321
            |||||||| ||||||||||||||||||||||||
Sbjct  303  TGGCCTCTTCCTTTCAAGCTCATCTGAATCTCT  335



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16487821672


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5