BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481008
Length=1159
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21430.1 | Symbols: | Papain family cysteine protease | chr... 1808 0.0
> AT2G21430.1 | Symbols: | Papain family cysteine protease | chr2:9171885-9173339
REVERSE LENGTH=1203
Length=1203
Score = 1808 bits (979), Expect = 0.0
Identities = 1099/1158 (95%), Gaps = 3/1158 (0%)
Strand=Plus/Plus
Query 5 ATCATCTTAGGGTTTTGTTCTCTGTTTCTCTTCTCTTTGTATTCGTCTCTGTTTCGATTT 64
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||
Sbjct 46 ATCATCTTAGGGTTTTGTTCTCTGTTTCTCTTATCTTTGTGTTCGTCTCTGTTTCGGTTT 105
Query 65 GCGGAGACGAAGATTTGTTGATCCGCCAAGTGGTTGATGAAGCGGAGCCGAAAGTTTTGT 124
| |||||||||||| |||||||| | ||||||||||||||| | ||||||||||||||||
Sbjct 106 GTGGAGACGAAGATGTGTTGATCAGGCAAGTGGTTGATGAAACAGAGCCGAAAGTTTTGT 165
Query 125 CATCGGAGGATCACTTTACTCTCTTCAAGAAGAAATTCGGGAAAGATTACGGTTCCATTG 184
|||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct 166 CATCGGAGGATCACTTTACTCTCTTCAAGAAGAAATTCGGCAAGGTTTACGGTTCCATTG 225
Query 185 AGGAGCATTATTACAGATTCTCTGTTTTCAAAGCTAATCTCCGGCGAGCGATGCGTCACC 244
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 226 AGGAGCATTATTACAGATTCTCTGTTTTCAAAGCAAATCTCCTGCGAGCGATGCGTCACC 285
Query 245 AGAAGATGGATCCATCTGCTCGTCATGGCGTTACGCAGTTTTCGGATCTGACTGGTTCTG 304
||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||
Sbjct 286 AGAAGATGGATCCTTCTGCTCGTCACGGCGTAACGCAGTTTTCGGATCTGACTCGTTCTG 345
Query 305 AGTTTCGGAGAAAGCATTTAGGGGTTAAAGGTGGGTTTAAGCTTCCCAAAGACGCTAATC 364
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 346 AGTTTCGGAGAAAGCATTTAGGGGTTAAAGGTGGGTTTAAGCTTCCTAAAGACGCTAATC 405
Query 365 AAGCTCCGATTCTCCCAACTCACAATCTTCCAGAGGAGTTTGATTGGAGAGATCGCGGCG 424
|||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 406 AAGCCCCGATTCTCCCTACTCAGAATCTTCCGGAGGAGTTTGATTGGAGAGATCGCGGCG 465
Query 425 CGGTTACTCCAGTGAAAAACCAGGGATCTTGTGGATCTTGCTGGAGTTTTAGCACTACAG 484
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 466 CGGTTACTCCCGTGAAAAACCAGGGATCTTGTGGTTCTTGCTGGAGTTTTAGCACTACAG 525
Query 485 GTGCTCTTGAAGGTGCTCACTTTCTCGCGACTGGCAAACTCGTTAGCCTCAGTGAACAAC 544
|||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 526 GTGCCCTTGAAGGTGCTCACTTCCTCGCTACTGGCAAACTCGTTAGTCTCAGTGAACAAC 585
Query 545 AGCTCGTCGATTGTGATCATGAGTGTGATCCAGAAGAGGCAGGTTCATGTGACTCTGGTT 604
||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||
Sbjct 586 AGCTCGTCGATTGTGATCACGAGTGTGATCCAGAAGAGGAAGGTTCATGTGATTCTGGTT 645
Query 605 GCAACGGTGGGCTTATGAACAGTGCCTTTGAGTACACGCTTAAAACCGGAGGGCTTATGC 664
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 646 GTAACGGTGGGCTTATGAACAGTGCCTTTGAATACACGCTTAAAACCGGAGGGCTTATGC 705
Query 665 GAGAGGAAGATTATCCTTACACTGGTACTGATGGAGGTAGCTGCAAGTTAGACAGGTCTA 724
||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 706 GAGAGAAAGATTATCCTTACACCGGTACTGATGGAGGGAGCTGCAAGTTAGACAGGTCTA 765
Query 725 AGATCGTTGCATCTGTCTCCAACTTCAGTGTTGTGTCTATCAACGAAGATCAAATAGCTG 784
|||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 766 AGATCGTTGCCTCTGTCTCCAACTTTAGTGTTGTGTCCATCAACGAAGATCAAATAGCTG 825
Query 785 CAAACCTCGTCAAAAACGGTCCTCTAGCTGTGGCGATCAACGCAGCTTATATGCAAACCT 844
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 826 CAAACCTTATCAAAAACGGTCCTCTAGCTGTGGCGATCAATGCAGCTTATATGCAAACCT 885
Query 845 ACATTGGAGGAGTCTCGTGTCCTTACATATGCTCGAGGCGGCTTAACCACGGTGTGTTGT 904
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 886 ACATTGGAGGAGTCTCGTGTCCTTACATATGCTCGAGGCGGCTCAACCACGGTGTGTTGT 945
Query 905 TGATGGGTTATGGTTCGTCTGGGTATTCTCAAGCAAGGTTAAAGGAAAAACCGTATTGGA 964
|| | |||||||| ||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 946 TGGTAGGTTATGGCTCGGCTGGGTTTTCTCAAGCAAGGTTAAAGGAAAAACCGTATTGGA 1005
Query 965 TCATCAAGAACTCGTGGGGTGAGTCTTGGGGTGAGAATGGTTTCTATAAGATATGTAAAG 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 TCATCAAGAACTCGTGGGGTGAGTCTTGGGGTGAGAATGGTTTCTATAAGATATGTAAAG 1065
Query 1025 GTCGTAACAATTGCGGTGTTGATAGTTTGGTCTCCACCGTCGCTGCTGCCACTTCTTGAG 1084
||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1066 GTCGTAACATTTGCGGTGTTGACAGTTTGGTCTCCACCGTCGCTGCTACCACTTCTTGAG 1125
Query 1085 CTTTTCATTATTCTGCTGCAATGATATTTAAACTCTGTAAATAAAT--T-AAGAAAAACA 1141
||||||||||||||||||||||| |||||||| ||||||||||||| | || |||||||
Sbjct 1126 CTTTTCATTATTCTGCTGCAATGCTATTTAAAGTCTGTAAATAAATGATTAACAAAAACA 1185
Query 1142 CATTTCTTGGTGAATTCG 1159
|||||||||||||||||
Sbjct 1186 TATTTCTTGGTGAATTCG 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56877217485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5