BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481009
Length=3000
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21440.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 3949 0.0
> AT2G21440.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9173560-9179166 REVERSE LENGTH=3265
Length=3265
Score = 3949 bits (2138), Expect = 0.0
Identities = 2421/2556 (95%), Gaps = 25/2556 (1%)
Strand=Plus/Plus
Query 453 AAGTAGAGAAGCCAATTGAGCGCAAAAAAGTAGAGAAGCCAATTGAGAGCAAAAAAGTAG 512
|||||||||||||| ||||||||||||||| |||||||||||||||| |||| ||||||
Sbjct 580 AAGTAGAGAAGCCAGTTGAGCGCAAAAAAGCAGAGAAGCCAATTGAGCTCAAACAAGTAG 639
Query 513 AGAAGCCTA-TTGAGCGaaaaaaaGTAGAGAAGCCAATTGAGAGCAAAAAAGTAGAGAAG 571
||||||| | ||||||| ||| |||||||||||||| ||||| ||||| |||||||||||
Sbjct 640 AGAAGCC-ATTTGAGCGCAAACAAGTAGAGAAGCCAGTTGAGCGCAAACAAGTAGAGAAG 698
Query 572 CCAGTTGAGCGCAAACAAGTAGAGAAGCCAGTTGAGCGCAAAAGACCAACAAAGCTTCAT 631
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 699 CCAGTTGAGCGCAAACAAGTAGAGAAGCCAATTGAGCGCAAAAGACCAACAAAGCTTCAT 758
Query 632 GTTGATTTACCTGATAAAGAAACATGTTCAGATAAGCAAAGAGTTGCAAGAACTGTAATA 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 GTTGATTTACCTGATAAAGAAACATGTTCAGATAAGCAAAGAGTTGCAAGAACTGTAATA 818
Query 692 TTTGGTGGGCTTGCTAATGCTGAGATGGCAGAGGTAGTGCATAGTCGAGTCAAAGAAATT 751
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 819 TTTGGTGGGCTTGCTAATGCTGAGATGGCAGAGGTAGTCCATAGTCGAGTCAAAGAGATT 878
Query 752 GGGACTGTGTGCTCTGTCAGATATCCCCTACCCAAAGAAGAGCTCCAACAAAATGGTCTT 811
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 GGCACTGTGTGCTCTGTCAGATATCCCCTACCCAAAGAAGAGCTCCAACAAAATGGTCTT 938
Query 812 ACCCAAGATGGATGCAGGGCAGAAGCATCAGCTGTTCTCTTTACGAGTGTCAAATCTGCT 871
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 ACCCAAGACGGATGCAGGGCAGAAGCATCAGCTGTTCTCTTTACGAGTGTCAAATCTGCT 998
Query 872 TGTGCCGTTGTTGCAAAATTACATCAAACAGA-GATAAAGGGAAATCTCATTTGGGCTCG 930
||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 999 TGTGCCGCTGTTGCAAAATTACATCAAACAGAAG-TAAAGGGAAATCTCATTTGGGCTCG 1057
Query 931 TCAGCTTGGTGGGGAGGGTTCAAAGGCTCAGAAGTGGAAACTAATTATACGAAATCTTCC 990
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1058 TCAGCTTGGTGGGGAGGGTTCAAAGGCTCAGAAGTGGAAACTTATTATCCGAAATCTTCC 1117
Query 991 TTTCCAGGCTAAACCTAGTGACATTAAAGAGGTCTTTTCAGCAGTAGGGTTTGTCTGGGA 1050
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1118 TTTCCAGGCTAAACCTAGTGATATTAAAGTGGTCTTTTCAGCAGTAGGGTTTGTCTGGGA 1177
Query 1051 TGTTTTTATTCCTAAAAATTTTGAAACTGGGCTACCTAAGGGTTTTGCATTTGTCAAATT 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 TGTTTTTATTCCTAAAAATTTTGAAACTGGGCTACCTAAGGGTTTTGCATTTGTCAAATT 1237
Query 1111 CACGTGTAAGAAAGATGCAGAAAATGCAATTCAAATGTTCAATGGGCACATGTTTGGTAA 1170
|||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||
Sbjct 1238 CACGTGTAAGAAAGATGCAGCAAATGCAATTAAAAAGTTCAATGGGCACATGTTTGGTAA 1297
Query 1171 AAGGCCTATAGCTGTAGACTGGGCTGTACCTAAGAATCTTTACAATGGTGCTGCTGATGC 1230
|||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 1298 AAGGCCTATAGCTGTAGACTGGGCGGTACCTAAAAATATTTACAATGGTGCTGCTGATGC 1357
Query 1231 CACTACTGCTTCAGCAGATGGTGACCAAA-AAGGAAGCGACGGGGACAGTGATAACAGTA 1289
||||||||||||||||||||||||| ||| ||||||| || ||||||||||| |||||||
Sbjct 1358 CACTACTGCTTCAGCAGATGGTGAC-AAAGAAGGAAGTGATGGGGACAGTGAAAACAGTA 1416
Query 1290 GTGTTGATTTGGAGGAGGTTGATGATGCTGTAGAAAGTCACCCACCTTCAGGAGATGATA 1349
||||||||||||||||||||||||| ||||||||||| ||||| ||| ||||||||||||
Sbjct 1417 GTGTTGATTTGGAGGAGGTTGATGAAGCTGTAGAAAGCCACCCTCCTCCAGGAGATGATA 1476
Query 1350 CTGATGATGAGGAGGAGGATGGCAGTAACAAACTGAGTGAATCAGATGCACTGGAGAAAG 1409
|||||||||| ||||| | | |||||||||||||| |||||||||||||||||| ||||
Sbjct 1477 CTGATGATGATGAGGACG--G-CAGTAACAAACTGACTGAATCAGATGCACTGGACAAAG 1533
Query 1410 ATGTTGGGACCGATGTGAATTTTGAAGAGGAAGCAAATGTTGCGAGAAAGGTTCTTAAGA 1469
|||||||||||||| |||| |||||||| |||||| ||||||| ||||||||||||||||
Sbjct 1534 ATGTTGGGACCGATATGAACTTTGAAGATGAAGCAGATGTTGCCAGAAAGGTTCTTAAGA 1593
Query 1470 ACTTGCTTGCGTCTTCAAAAGGTTCCATTGCTTCTCCTGATGGAGAGACAGAGGAGTCGG 1529
|||||||||| |||||||||||||| | |||| | ||||| |||||||||||||| ||||
Sbjct 1594 ACTTGCTTGCTTCTTCAAAAGGTTCTACTGCTACACCTGAGGGAGAGACAGAGGAATCGG 1653
Query 1530 ATAAAAGCAAACTTAAAAATTCATCAACTAAGCCAGTCGCTGACTCTTCTGGTGTCTCTG 1589
||||||| ||||| |||| |||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1654 ATAAAAGTAAACTGAAAAGTTCATCAACTAAGCCAGTTGCTGACTCTTCTGGTGTATCTG 1713
Query 1590 AACCTTTGAAATCCGGTAAAACTAAAGAGGTGGCTCCTAAAGAAACGCAGGAAAATGA-G 1648
||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| |
Sbjct 1714 AACCTTTGAAATCCGGTAAAACTAAAGTGGTGGCTCCTAAAGAGACGCAGGATAATGATG 1773
Query 1649 CATTTTGAGAGAACTTTATTTATAAGAAACATCCCATTTGATGTTACTAAGGAAGAAGTC 1708
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1774 -ATTTTGAGAGAACTTTATTTATAAGAAACCTCCCATTTGATGTTACTAAGGAAGAAGTC 1832
Query 1709 AAACAGAGGTTTGCTGTATTTGGGGAAGTTGAATCCTTATTCCTGGTTCTCAACAAGGTC 1768
|||||||||||| | |||||||||||||||||||| |||| |||||||||| ||||||||
Sbjct 1833 AAACAGAGGTTTACAGTATTTGGGGAAGTTGAATCTTTATCCCTGGTTCTCCACAAGGTC 1892
Query 1769 ACAAAACGGCCAGAAGGGACTGCTTTTCTCAAGTTCAAAACAGCAGATGCATCAGTTGCA 1828
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1893 ACAAAACGGCCAGAAGGGACTGCTTTTGTCAAGTTCAAAACAGCAGATGCATCAGTTGCA 1952
Query 1829 GCCATATCAGCTGCCAATACTGCCTCAGGTGTCGGTGTCCTTCTTAAAGGCAGGCAACTG 1888
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1953 GCCATTTCAGCTGCCGATACTGCCTCAGGTGTCGGTGTCCTTCTTAAAGGCAGGCAACTA 2012
Query 1889 AACGTTATGAGAGCTGTGGGTAAGAAAGCTGCACATGACATAGAACTCAAAAAGACAGAG 1948
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 2013 AACGTTATGAGAGCTGTGGGTAAGAAAGCTGCAAAGGACATAGAACTCAAAAAGACAGAG 2072
Query 1949 GAGAAGAATGTTGACCATCGGAATCTTTATCTTGCTAAGGAAGGTCAGATCCTTGATGAT 2008
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2073 GAGAAGAATGTTGACCATCGGAATCTTTATCTTGCTAAAGAAGGTCAGATCCTTGATGAT 2132
Query 2009 TCACCTGCTGCTGAGGGTGTGTCTGCGGAAGATATGGACAGGCGACGAAGATTGCATGAA 2068
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2133 ACACCTGCTGCTGAGGGTGTGTCTGCGGAAGATATGGACAAGCGACGAAGATTGCATGAA 2192
Query 2069 AACAAGATGAAAAAGCTTCAGTCTCCTAACTTCCATGTATCTCGAACAAGGCTTGTGATC 2128
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2193 AACAAGATGAAAATGCTTCAGTCTCCTAACTTCCATGTATCTCGGACAAGGCTTGTGATT 2252
Query 2129 TATAATTTACCCAAATCCATGAATCAAAAGCAACTACACAAGCTCTTAGTTGATGCTGTT 2188
|||||||| ||||| |||||||||| |||||||||| ||| |||||||||||||||||||
Sbjct 2253 TATAATTTGCCCAAGTCCATGAATCCAAAGCAACTAAACAGGCTCTTAGTTGATGCTGTT 2312
Query 2189 ACCTCACGAGCTACAAAGCAGAAGCCGTGTATTCGACAGATCAAGTTCTTACAAAATGAG 2248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2313 ACCTCACGAGCTACAAAGCAGAAGCCGTGTATTCGACAGATCAAGTTCTTACAAAATGAG 2372
Query 2249 AAGAAGGGTAAAGTTGATACTAAGAACTACTCCCGTGGAGTTGCCTTTGTCGAGTTCACG 2308
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2373 AAGAAAGGTAAAGTTGATACTAAGAACTACTCCCGTGGAGTTGCCTTTGTTGAGTTCACG 2432
Query 2309 GAGCATGAACATGCTCTAGTGGCCCTGAGAGTACTTAACAACAATCCTGAAACATTTGGT 2368
||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 2433 GAGCATGAACATGCTCTTGTAGCCCTGAGAGTACTTAACAACAATCCTGAGACATTTGGT 2492
Query 2369 CCCCAGCACCGCCCTGTTATAGAATTTGCTGTTGATAATGTCCAGAAGCTGAAGATACGA 2428
|| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2493 CCTCAACACCGCCCTGTCATAGAATTTGCTGTTGATAATGTCCAGAAGCTGAAGATACGA 2552
Query 2429 GAAGCTAAGCAGCAGCAGTTTCAGCAACGTGATAAACACAATGAATCTGAGCAGCAGCAG 2488
||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 2553 GAAGCTAAGCAGCAGCAGTTTCAGCAACGCGAGAAACACAATGAATCTGATCAGCAGCAG 2612
Query 2489 TCGAATGGCGAAGCACAGGCACCTGACAATAAATACAAACGAAAAACGAGGGAAGGGGAT 2548
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2613 GCGAACGGCGAAGCACAGGCACCTGACAATAAATACAAACGAAAAACGAGGGAAGGGGAT 2672
Query 2549 AACACTGGTCCAAGGAAAGAGAATGCAGCCAGGTTTAAGAAGGGACCTGGTCGCCCAGGT 2608
||||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 2673 AACACTGGTCCAAGGAAAGAGAATGCAGCCAGGTTTAAGAAGGGACCACGT-G---A--- 2725
Query 2609 GTAGAGAGTAAAGAAGAAGCAAAATCCAATATAGCAGTAAAGGATGATGCAGCAGAGAAG 2668
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 2726 --AGAGAGTAAAGAAGAAGCAAAATCCAATATAGCAGTAAAAGATAATGCAGCAGAGAAG 2783
Query 2669 AAGAGACCTATACGCACACAGGAAAAACCGTCTTCAAACAAGAAAGGCCAATTAATGAGA 2728
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2784 AAGAGACCTATACGCACACAGGAAAAACCGTCTTCAAACAAGAAAGGCCAATTGATGAGA 2843
Query 2729 CAGAAAGAGCCAACTGAGAAACCAAATCC-AAAGATTTCCAAAGATTTGAGCGAACCAAG 2787
||||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||||||
Sbjct 2844 CAGAAAGAGACAACTGAGAAACCAGATCCGAAA-ATTTCCAAAGATTTGAGCGAACCAAG 2902
Query 2788 AAAAAGGAAGTTTGGGGAGGATAGAGGTGAAGAGAATATAAATGGACAGAGGAAGAGGAA 2847
|| |||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 2903 GAAGAGGAAGTTCGGGGAGGATAGAGGTGAAGAGAATAGAAATGGGCAGAGGAAGAGGAA 2962
Query 2848 GAAG-AAG--CAAGGTCAAGGTGGTGCAGAGGTTGTGGACAAACTTGATATGTTGATTGA 2904
|||| ||| |||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 2963 GAAGCAAGGTCAAGGTCAAGGTGGTGCAGAAGTTGTGGACAAACTTGATCTGTTGATTGA 3022
Query 2905 GCAATACAGATCTAAGTTCTCGCAGAGCTCAGCCAAAACCGGCCCACAAAAACAGAGTTC 2964
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3023 GAAATACAGGTCTAAGTTCTCGCAGAGCTCAGCCAAAACCGGCCCACAAAAACAGAGTTC 3082
Query 2965 CGGTCAAGTCAGGAGGTGGTTCGAATCCTGAGACTT 3000
||||||||||||||||||||||||||| ||||||||
Sbjct 3083 CGGTCAAGTCAGGAGGTGGTTCGAATCTTGAGACTT 3118
Score = 798 bits (432), Expect = 0.0
Identities = 544/597 (91%), Gaps = 12/597 (2%)
Strand=Plus/Plus
Query 23 GTATCAATGGGGAAAAACAAGAAAGTGAGGAAAGATGGAGAAGAAAAATCTCCACA-GTC 81
|||||||||||||||||||||| || |||||||||||||||||| ||||||||||| | |
Sbjct 96 GTATCAATGGGGAAAAACAAGAGAGAGAGGAAAGATGGAGAAGAGAAATCTCCACACG-C 154
Query 82 TGCCACCATTGTTTGCGTCTCTGGCTTGCCTTATTCCATCACCAACGCTCAGCTTGAAGA 141
|||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 155 TGCCGCCACTGTTTGCGTCTCTGGCTTGCCTTATTCCATCACCAACGCACAGCTTGAAGA 214
Query 142 AGCCTTTAGTGAAGTTGGTCCC-GTCAGGCGTTGCTATCTGATCACAAATAA-GGGTTCT 199
|||||||||||||||||| ||| ||||||||||||| |||| |||||||||| |||| ||
Sbjct 215 AGCCTTTAGTGAAGTTGG-CCCAGTCAGGCGTTGCTTTCTGGTCACAAATAAAGGGT-CT 272
Query 200 AATGAACACCGTGGCTTTGCGTTTGTTACATTTGCTTTACCAGAAGATGTTAACCGTGCC 259
|||||||||| |||||||||||||||| ||||||||||| |||||||||||| ||||||
Sbjct 273 GATGAACACCGCGGCTTTGCGTTTGTTAAATTTGCTTTACAAGAAGATGTTAATCGTGCC 332
Query 260 ATTGAGTTGAAGAACGGTTCTACTATTGGTGGCCGTAGGATTACTGTTAAACAAGCCACA 319
|||||||||||||||||||||||| |||| ||||||||||||||||||||||| || ||
Sbjct 333 ATTGAGTTGAAGAACGGTTCTACTGTTGGGGGCCGTAGGATTACTGTTAAACAGGCTGCA 392
Query 320 AATCGACCTTCTCTTCAAGAGCGTCGAACTAAAGCAGTTCAAGGAATCTCTTTACCTGAT 379
|||||||||||||||||||||||||||| ||||||| | |||| |||||| ||||||||
Sbjct 393 CATCGACCTTCTCTTCAAGAGCGTCGAACAAAAGCAGCTGAAGGGATCTCTGTACCTGAT 452
Query 380 GATTCCCAGGCACAGAGTGACCAGGACACTTCGATCCCCGAGACAGACGAGAAAGT-TCC 438
||||||||| |||||||||| |||||||||| ||||| ||||||||||||||||| ||
Sbjct 453 AATTCCCAGGGACAGAGTGACAAGGACACTTCAATCCCTGAGACAGACGAGAAAGTATC- 511
Query 439 TCCACCTGA-AACAAAAGTAGAGAAGCCAATTGAGCGCAAAAAAGTAGAGAAGCCAATTG 497
|||||| || || |||| ||||||||||| |||||||||||||||||||||| |||||||
Sbjct 512 TCCACCCGAGAA-AAAATTAGAGAAGCCAGTTGAGCGCAAAAAAGTAGAGAAACCAATTG 570
Query 498 AGAGCAAAAAAGTAGAGAAGCCTA-TTGAGCGaaaaaaaGTAGAGAAGCCAATTGAGAGC 556
|| ||||| ||||||||||||| | ||||||| ||||||| |||||||||||||||| |
Sbjct 571 AGCGCAAACAAGTAGAGAAGCC-AGTTGAGCGCAAAAAAGCAGAGAAGCCAATTGAGCTC 629
Query 557 AAAAAAGTAGAGAAGCCAGTTGAGCGCAAACAAGTAGAGAAGCCAGTTGAGCGCAAA 613
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 630 AAACAAGTAGAGAAGCCATTTGAGCGCAAACAAGTAGAGAAGCCAGTTGAGCGCAAA 686
Score = 130 bits (70), Expect = 8e-29
Identities = 83/89 (93%), Gaps = 1/89 (1%)
Strand=Plus/Plus
Query 527 CGa-aaaaaaGTAGAGAAGCCAATTGAGAGCAAAAAAGTAGAGAAGCCAGTTGAGCGCAA 585
||| |||||| ||||||||||| ||||| |||||||||||||||| ||| ||||||||||
Sbjct 518 CGAGAAAAAATTAGAGAAGCCAGTTGAGCGCAAAAAAGTAGAGAAACCAATTGAGCGCAA 577
Query 586 ACAAGTAGAGAAGCCAGTTGAGCGCAAAA 614
|||||||||||||||||||||||||||||
Sbjct 578 ACAAGTAGAGAAGCCAGTTGAGCGCAAAA 606
Score = 47.3 bits (25), Expect = 9e-04
Identities = 27/28 (96%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 451 AAAAGTAGAGAAGCCAATTGAGCGCAAA 478
|||||||||||| |||||||||||||||
Sbjct 551 AAAAGTAGAGAAACCAATTGAGCGCAAA 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 149146321539
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5