BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481010 Length=2439 Score E Sequences producing significant alignments: (Bits) Value AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 | chr2:9... 3446 0.0 > AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 | chr2:9179410-9182356 REVERSE LENGTH=2663 Length=2663 Score = 3446 bits (1866), Expect = 0.0 Identities = 2067/2163 (96%), Gaps = 17/2163 (1%) Strand=Plus/Plus Query 251 TTACTCCTCTATATAAAAGGCTGAAGAAGCTCAAGGAAGTGATTGTTGTGAAGAATGGAG 310 ||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 293 TTAATCCTCTAGAAAAAAGGCTGAAGAAGCTCAAGGAAGTGATTGTTGTGAAGAATGGAG 352 Query 311 ATAGCTCAGGATCTGACAT-GAGTCCACAAGGTTATGACGAGGAGGATTCATCGAGTAAT 369 ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||| Sbjct 353 ATAGCTCAGGATCTGAC-TCGAGTCCACAAGGTTATGACGAGGAGGATTCATCGAGGAAT 411 Query 370 TCAACTGATATTGACAATCAAAGTCCTCTATATGTAGATGCAGAAGAAGAAGAAGAGCTT 429 || |||||||||||||||||||| ||||||||| |||||||||||||||||||| ||| Sbjct 412 TCTACTGATATTGACAATCAAAG---TCTATATGTGGATGCAGAAGAAGAAGAAGAACTT 468 Query 430 TGGAGGCAGATGGCTTTTGCTCAAGAATCAATTAAGGTAACGGTGGAGGATTCACAAAGT 489 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 469 TGGAGGAAGATGGCTTTTGCTCAAGAATCAATTAAGGTAACGGTGGAGGATTCACAAAGT 528 Query 490 AATGATCACAAACAAGTCGAAGACTGTGACCATTCCTTCATCTGCAAGGACGATATTGGA 549 ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct 529 AATGATCACAAACAAATCGAAGACTGTGACCATTCCTTCATTTGCAAGGACGATATTGGA 588 Query 550 GAAGTGTGTCGTGTTTGTGGACTCATCAAGAAACCAATTGAGAGCATGATTGAAGTTGTG 609 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 589 GAAGTGTGTCGTGTTTGTGGACTTATCAAGAAACCAATTGAGAGCATGATTGAGGTTGTG 648 Query 610 TTCAACAAGCCAAAGAGATCAAGAAGAACTTATATGCGTGAAAAAGAAAATGGGGAAACG 669 |||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 649 TTCAACAAGCAAAAGAGATCGAGGAGAACTTATATGCGTGAAAAAGAAAATGGGGAAACG 708 Query 670 AGTAGGGCCTTCTCAGGAATCCAGTCTTCTCAGACAAACATTTTGGGAGAAAAAATGTTC 729 || |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 709 AGCAGGGATTTCTCAGGAATCCAGTCTTCTCATACAAACATTTTGGGAGAAAAAATGTTC 768 Query 730 ATTCACCCATGGCATGATCAGGAGATGAGGCCTCACCAGACTGAAGGATTCAGATTTTTA 789 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 769 ATTCACCCATGGCATGATCAGGAGATGAGGCCTCACCAGACTGAAGGATTTAGATTTTTA 828 Query 790 TGCAACAACCTTGCAGCGGATGAGCCAGGTGGATGCATATTAGCTCATGCACCAGGATCA 849 || |||||||||||||| |||||||||||||||||||||||||||||||| || |||||| Sbjct 829 TGTAACAACCTTGCAGCAGATGAGCCAGGTGGATGCATATTAGCTCATGCTCCGGGATCA 888 Query 850 GGCAAGACATTTCTGCTCATCAGCTTTCTGCAGAGCTTCATGGCTATGGATCCGCAGGCT 909 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 889 GGCAAGACATTTCTGCTCATCAGCTTTCTGCAGAGTTTCATGGCTATGGATCCGCAGGCT 948 Query 910 AGACCATTGATTGTGCTACCGAAGGGGATCATAGAGTCATGGAAGAGAGAGTTTACTTTG 969 ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 949 AGACCATTGGTTGTGCTACCAAAGGGGATCATAGAGTCATGGAAGAGAGAGTTTACTTTG 1008 Query 970 TGGGAAGTTGAGAAGATTCCCCTGCTTGATTTCTACAGCGTGAAAGCAGAATCACGGAAG 1029 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1009 TGGGAAGTTGAGAAGATTCCCCTGCTTGATTTCTACAGCGTGAAAGCAGAATCACGGAAG 1068 Query 1030 CAGCAACTGAAGGTTTTGGGGCAATGGCTCAAGGAGAGAAGCATTCTGTTTCTTGGGTAC 1089 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 1069 CAGCAACTGAAGGTTTTGGGGCAATGGATCAAGGAGAGAAGCATTCTGTTTCTTGGTTAC 1128 Query 1090 CAACAGTTTACGAGGATCATCTGCGATGATAAGAATTTTGAGGCAGCTTCAGAAGATTGT 1149 |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 1129 CAACAGTTTACGAGGATCATCTGCGATGATAAC--TTT-GAGGCAGCTTCAGAAGATTGT 1185 Query 1150 AAGCTGATATTGCTTGAGAAGCCAACGTTGCTTATACTTGATGAGGGTCATACGTCAAGG 1209 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1186 AAGCTGATATTGCTTGAGAAGCCAACGTTGCTTATACTTGATGAGGGTCATACCTCAAGG 1245 Query 1210 AATAAGGAGACGAACATGCTTATTTCGCTTGCTCGTGTCAAGACTCCTCGAAAGGTGGTT 1269 ||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 1246 AATAAGGAGACCTACATGCTTAGTTCGCTTGCTCGTGTCAAGACTCGTCGAAAGGTGGTT 1305 Query 1270 CTCACAGGGACCTTGTTCCAAAACAACGTTGAGGAAGTGTTCAACATTTTGAATCTTGTT 1329 |||||||| ||||||||||||||||||||||| |||||||| ||||||||| |||||||| Sbjct 1306 CTCACAGGTACCTTGTTCCAAAACAACGTTGAAGAAGTGTTTAACATTTTGGATCTTGTT 1365 Query 1330 CGGCCCAAGTTCTTGAAGCGTCCTGGAACTCGGGAGATTGTTTCTCGTATCATGAGCAAG 1389 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1366 CGTCCCAAGTTCTTGAAGCGCCCTGGAACTCGGGAGATTGTTTCTCGTATCATGAGCAAG 1425 Query 1390 GCAGAGATACCGAGAGGCAAACATGTGAACCAGAGTAGTA-T-----CGAGGGGACTTTC 1443 ||||||||||| ||||| ||||| |||||||||||||||| | ||||||||||||| Sbjct 1426 GCAGAGATACCAAGAGGAAAACAGGTGAACCAGAGTAGTAGTAGTATCGAGGGGACTTTC 1485 Query 1444 TTCGCTGCAGTAGAGCTTACATTACAGAAGAGTATAGACTTTTCTGCCAAAGCCAGCTTG 1503 || ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| Sbjct 1486 TTTGCTGCAGTAGAGCTTACATTACAGAGGAGTACAAACTTTTCTGCCAAAGCCAGCTTG 1545 Query 1504 ATAAAGGATCTCCGCGAAATGACCCGTAATATCTTGCATTATCACAAAGCAGATTTTAGC 1563 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1546 ATAAAGGATCTACGCGAAATGACCCGTAATATCTTGCATTATCACAAAGCAGATTTTAGC 1605 Query 1564 GGCTTGCTTCCGGGGCTTAGTGAGTTCACTGTCATGCTAAATTTGAGCTCAATTCAGAGA 1623 |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 1606 GGCTTGCTTCCGGGGCTTAGTGAGTTCACTGTCATGCTCAACCTGAGCTCAATTCAGAGA 1665 Query 1624 GATGAAATCAAGGGTCTGAGGAAAATGGAACTGTTCAAGCAGATCTCTCTTGGTGCTGCT 1683 |||||| | || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1666 GATGAAGTAAAAGGTCTGAGGAAAATGGAACTGTTCAAGCAGATCTCTCTTGGTGCTGCT 1725 Query 1684 TTGTATATACACCCAAAGCTCAAATCTTTCTTGGAGGAAAACCCTTCCAACGGGGAAAAA 1743 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1726 TTGTATATACACCCAAAGCTCAAATCTTTCTTGGAGGAAAACCCTTCCAACGGGGAAAAG 1785 Query 1744 GGTTTTGCTGATAACAACGCAACAGTTATGAAGCTGGACAAGATGCTGAAGAAGATCAAT 1803 |||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 1786 GGTTTTTCTGATAACAATACAACAGTTATGAAGCTGGACAAGATGCTGAAAAAGATCAAT 1845 Query 1804 GTCAGAGATGGTGTGAAGATGAAATTCTTCCTCAACCTCTTAGCTCTGTGTGAATCAACA 1863 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1846 GTGAGAGATGGGGTGAAGATGAAATTCTTCCTCAACCTCTTAGCTCTGTGTGAATCAACA 1905 Query 1864 GGAGAGAAGCTTTTGGTGTTCAGCCAATACATTGTTCCAATAAAGACTCTTGAGAGACTG 1923 ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 1906 GGAGAGAAGCTCTTGGTGTTTAGCCAATACATTGTTCCAATAAAGACTCTCGAGAGACTC 1965 Query 1924 ATGAGCTCAATGAAAGGTTGGCGTTTAGGGAAAGAGATGTTCACAATCACAGGTGATTCA 1983 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1966 ATGAGCTCAATGAAAGGTTGGCGTTTAGGGAAAGAGATGTTCACAATCACAGGTGATTCA 2025 Query 1984 AGCAATGAACAGAGAGAATGGTCAATGGAGAGATTCAACAACTCACCAGAGGCTAAAGTG 2043 ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| Sbjct 2026 AGCAATGAACAGAGAGAATGGTCAATGGAGAGATTCAACAATTCACTAGAGGCTAAAGTG 2085 Query 2044 TTTTTCGGATCGATCAAAGCTTGTGGGGAAGGAATATCACTAGTGGGTGCATCACGAGTT 2103 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2086 TTTTTCGGATCGATCAAAGCTTGTGGGGAAGGAATATCACTAGTGGGTGCATCACGGGTT 2145 Query 2104 CTGATTCTTGATGTTCATCTGGACCCATCAGTGACTCAGCAAGCCGTGGCTCGAGCTTAT 2163 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2146 CTGATTCTTGATGTTCATCTGAACCCATCAGTGACTCAGCAAGCCGTGGCTCGAGCTTAT 2205 Query 2164 AGACCAGGACAGAAGAGGAAAGTGTATGCGTACAAGCTCGTAGCTGCGGGGTCACCAGAG 2223 ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 2206 AGACCAGGACAGAAGAGGAAAGTATATGCGTACAAGCTCGTAGCTGCGGATTCACCAGAG 2265 Query 2224 GAAGAGAACTACGAAACGTGTACGCGTAAAGAGATGATGTCTAAGATGTGGTTCGAGTGG 2283 ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 2266 GAAGAGAACTACGAAACATGTACGCGTAAAGAGATGATGTCGAAGATGTGGTTCGAGTGG 2325 Query 2284 AATGTTGGCTCAGGAAGAG-GTGATTTTGGGCTAAGAGCCATTGATGTTGATCACTCCGG 2342 |||||||| |||||||||| | ||||||||| | ||||||||||||| |||||||||||| Sbjct 2326 AATGTTGGATCAGGAAGAGAG-GATTTTGGGTTTAGAGCCATTGATGCTGATCACTCCGG 2384 Query 2343 TGATGCGTTTCTTGAAACGACCAAGATGAAGGAAGATATCAAGTGTTTATACACAA-GGT 2401 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2385 TGATGCGTTTCTTGAAACGACCAAGATGAAGGAAGATATCAAGTGTTTATACACAAAGGT 2444 Query 2402 AAA 2404 ||| Sbjct 2445 AAA 2447 Score = 315 bits (170), Expect = 2e-84 Identities = 202/218 (93%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 9 CACAGCTTGGACTTTGAGGTCACGTAGCAGGAGCATTACTCAAGAAGAACTTGCCAAGCG 68 ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 6 CACAGCTTGGAATTTAAGGTCACGTAGCAGGAGCATTACTCAAGAAGAACTTGCCAAGCG 65 Query 69 TCCCGACCCGTTCAGTGTACCGAATCTTCTTGATGGGCTTGAAGATGGTGTATACGGATG 128 ||| ||||| ||| || |||||||||| ||||||||||||||||||||| |||||||| | Sbjct 66 TCCTGACCCATTCTGTCTACCGAATCTCCTTGATGGGCTTGAAGATGGTTTATACGGACG 125 Query 129 TCTTGCTGATAATGTTAAGAGACTTTGTAAGCTGAGACAGGAATATTTGAATGGTTCTAT 188 |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 126 TCTTGCTGATGATGTAAAGAGACTTTGTAAGCTGAGACAGGAATATTTGAATGGTTCCAT 185 Query 189 CTCACTGGAAGATATCGAAGCTAGAGAAGAGAAAAAAC 226 |||| |||||||||||||||||||| |||| || |||| Sbjct 186 CTCATTGGAAGATATCGAAGCTAGACAAGACAACAAAC 223 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 121133915085 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5