BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481010
Length=2439
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 | chr2:9... 3446 0.0
> AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 | chr2:9179410-9182356
REVERSE LENGTH=2663
Length=2663
Score = 3446 bits (1866), Expect = 0.0
Identities = 2067/2163 (96%), Gaps = 17/2163 (1%)
Strand=Plus/Plus
Query 251 TTACTCCTCTATATAAAAGGCTGAAGAAGCTCAAGGAAGTGATTGTTGTGAAGAATGGAG 310
||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 TTAATCCTCTAGAAAAAAGGCTGAAGAAGCTCAAGGAAGTGATTGTTGTGAAGAATGGAG 352
Query 311 ATAGCTCAGGATCTGACAT-GAGTCCACAAGGTTATGACGAGGAGGATTCATCGAGTAAT 369
||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 353 ATAGCTCAGGATCTGAC-TCGAGTCCACAAGGTTATGACGAGGAGGATTCATCGAGGAAT 411
Query 370 TCAACTGATATTGACAATCAAAGTCCTCTATATGTAGATGCAGAAGAAGAAGAAGAGCTT 429
|| |||||||||||||||||||| ||||||||| |||||||||||||||||||| |||
Sbjct 412 TCTACTGATATTGACAATCAAAG---TCTATATGTGGATGCAGAAGAAGAAGAAGAACTT 468
Query 430 TGGAGGCAGATGGCTTTTGCTCAAGAATCAATTAAGGTAACGGTGGAGGATTCACAAAGT 489
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 TGGAGGAAGATGGCTTTTGCTCAAGAATCAATTAAGGTAACGGTGGAGGATTCACAAAGT 528
Query 490 AATGATCACAAACAAGTCGAAGACTGTGACCATTCCTTCATCTGCAAGGACGATATTGGA 549
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 529 AATGATCACAAACAAATCGAAGACTGTGACCATTCCTTCATTTGCAAGGACGATATTGGA 588
Query 550 GAAGTGTGTCGTGTTTGTGGACTCATCAAGAAACCAATTGAGAGCATGATTGAAGTTGTG 609
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 589 GAAGTGTGTCGTGTTTGTGGACTTATCAAGAAACCAATTGAGAGCATGATTGAGGTTGTG 648
Query 610 TTCAACAAGCCAAAGAGATCAAGAAGAACTTATATGCGTGAAAAAGAAAATGGGGAAACG 669
|||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 649 TTCAACAAGCAAAAGAGATCGAGGAGAACTTATATGCGTGAAAAAGAAAATGGGGAAACG 708
Query 670 AGTAGGGCCTTCTCAGGAATCCAGTCTTCTCAGACAAACATTTTGGGAGAAAAAATGTTC 729
|| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 709 AGCAGGGATTTCTCAGGAATCCAGTCTTCTCATACAAACATTTTGGGAGAAAAAATGTTC 768
Query 730 ATTCACCCATGGCATGATCAGGAGATGAGGCCTCACCAGACTGAAGGATTCAGATTTTTA 789
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 769 ATTCACCCATGGCATGATCAGGAGATGAGGCCTCACCAGACTGAAGGATTTAGATTTTTA 828
Query 790 TGCAACAACCTTGCAGCGGATGAGCCAGGTGGATGCATATTAGCTCATGCACCAGGATCA 849
|| |||||||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 829 TGTAACAACCTTGCAGCAGATGAGCCAGGTGGATGCATATTAGCTCATGCTCCGGGATCA 888
Query 850 GGCAAGACATTTCTGCTCATCAGCTTTCTGCAGAGCTTCATGGCTATGGATCCGCAGGCT 909
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 889 GGCAAGACATTTCTGCTCATCAGCTTTCTGCAGAGTTTCATGGCTATGGATCCGCAGGCT 948
Query 910 AGACCATTGATTGTGCTACCGAAGGGGATCATAGAGTCATGGAAGAGAGAGTTTACTTTG 969
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 949 AGACCATTGGTTGTGCTACCAAAGGGGATCATAGAGTCATGGAAGAGAGAGTTTACTTTG 1008
Query 970 TGGGAAGTTGAGAAGATTCCCCTGCTTGATTTCTACAGCGTGAAAGCAGAATCACGGAAG 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 TGGGAAGTTGAGAAGATTCCCCTGCTTGATTTCTACAGCGTGAAAGCAGAATCACGGAAG 1068
Query 1030 CAGCAACTGAAGGTTTTGGGGCAATGGCTCAAGGAGAGAAGCATTCTGTTTCTTGGGTAC 1089
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1069 CAGCAACTGAAGGTTTTGGGGCAATGGATCAAGGAGAGAAGCATTCTGTTTCTTGGTTAC 1128
Query 1090 CAACAGTTTACGAGGATCATCTGCGATGATAAGAATTTTGAGGCAGCTTCAGAAGATTGT 1149
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1129 CAACAGTTTACGAGGATCATCTGCGATGATAAC--TTT-GAGGCAGCTTCAGAAGATTGT 1185
Query 1150 AAGCTGATATTGCTTGAGAAGCCAACGTTGCTTATACTTGATGAGGGTCATACGTCAAGG 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1186 AAGCTGATATTGCTTGAGAAGCCAACGTTGCTTATACTTGATGAGGGTCATACCTCAAGG 1245
Query 1210 AATAAGGAGACGAACATGCTTATTTCGCTTGCTCGTGTCAAGACTCCTCGAAAGGTGGTT 1269
||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1246 AATAAGGAGACCTACATGCTTAGTTCGCTTGCTCGTGTCAAGACTCGTCGAAAGGTGGTT 1305
Query 1270 CTCACAGGGACCTTGTTCCAAAACAACGTTGAGGAAGTGTTCAACATTTTGAATCTTGTT 1329
|||||||| ||||||||||||||||||||||| |||||||| ||||||||| ||||||||
Sbjct 1306 CTCACAGGTACCTTGTTCCAAAACAACGTTGAAGAAGTGTTTAACATTTTGGATCTTGTT 1365
Query 1330 CGGCCCAAGTTCTTGAAGCGTCCTGGAACTCGGGAGATTGTTTCTCGTATCATGAGCAAG 1389
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1366 CGTCCCAAGTTCTTGAAGCGCCCTGGAACTCGGGAGATTGTTTCTCGTATCATGAGCAAG 1425
Query 1390 GCAGAGATACCGAGAGGCAAACATGTGAACCAGAGTAGTA-T-----CGAGGGGACTTTC 1443
||||||||||| ||||| ||||| |||||||||||||||| | |||||||||||||
Sbjct 1426 GCAGAGATACCAAGAGGAAAACAGGTGAACCAGAGTAGTAGTAGTATCGAGGGGACTTTC 1485
Query 1444 TTCGCTGCAGTAGAGCTTACATTACAGAAGAGTATAGACTTTTCTGCCAAAGCCAGCTTG 1503
|| ||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct 1486 TTTGCTGCAGTAGAGCTTACATTACAGAGGAGTACAAACTTTTCTGCCAAAGCCAGCTTG 1545
Query 1504 ATAAAGGATCTCCGCGAAATGACCCGTAATATCTTGCATTATCACAAAGCAGATTTTAGC 1563
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 ATAAAGGATCTACGCGAAATGACCCGTAATATCTTGCATTATCACAAAGCAGATTTTAGC 1605
Query 1564 GGCTTGCTTCCGGGGCTTAGTGAGTTCACTGTCATGCTAAATTTGAGCTCAATTCAGAGA 1623
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1606 GGCTTGCTTCCGGGGCTTAGTGAGTTCACTGTCATGCTCAACCTGAGCTCAATTCAGAGA 1665
Query 1624 GATGAAATCAAGGGTCTGAGGAAAATGGAACTGTTCAAGCAGATCTCTCTTGGTGCTGCT 1683
|||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1666 GATGAAGTAAAAGGTCTGAGGAAAATGGAACTGTTCAAGCAGATCTCTCTTGGTGCTGCT 1725
Query 1684 TTGTATATACACCCAAAGCTCAAATCTTTCTTGGAGGAAAACCCTTCCAACGGGGAAAAA 1743
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1726 TTGTATATACACCCAAAGCTCAAATCTTTCTTGGAGGAAAACCCTTCCAACGGGGAAAAG 1785
Query 1744 GGTTTTGCTGATAACAACGCAACAGTTATGAAGCTGGACAAGATGCTGAAGAAGATCAAT 1803
|||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1786 GGTTTTTCTGATAACAATACAACAGTTATGAAGCTGGACAAGATGCTGAAAAAGATCAAT 1845
Query 1804 GTCAGAGATGGTGTGAAGATGAAATTCTTCCTCAACCTCTTAGCTCTGTGTGAATCAACA 1863
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1846 GTGAGAGATGGGGTGAAGATGAAATTCTTCCTCAACCTCTTAGCTCTGTGTGAATCAACA 1905
Query 1864 GGAGAGAAGCTTTTGGTGTTCAGCCAATACATTGTTCCAATAAAGACTCTTGAGAGACTG 1923
||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1906 GGAGAGAAGCTCTTGGTGTTTAGCCAATACATTGTTCCAATAAAGACTCTCGAGAGACTC 1965
Query 1924 ATGAGCTCAATGAAAGGTTGGCGTTTAGGGAAAGAGATGTTCACAATCACAGGTGATTCA 1983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1966 ATGAGCTCAATGAAAGGTTGGCGTTTAGGGAAAGAGATGTTCACAATCACAGGTGATTCA 2025
Query 1984 AGCAATGAACAGAGAGAATGGTCAATGGAGAGATTCAACAACTCACCAGAGGCTAAAGTG 2043
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 2026 AGCAATGAACAGAGAGAATGGTCAATGGAGAGATTCAACAATTCACTAGAGGCTAAAGTG 2085
Query 2044 TTTTTCGGATCGATCAAAGCTTGTGGGGAAGGAATATCACTAGTGGGTGCATCACGAGTT 2103
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2086 TTTTTCGGATCGATCAAAGCTTGTGGGGAAGGAATATCACTAGTGGGTGCATCACGGGTT 2145
Query 2104 CTGATTCTTGATGTTCATCTGGACCCATCAGTGACTCAGCAAGCCGTGGCTCGAGCTTAT 2163
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2146 CTGATTCTTGATGTTCATCTGAACCCATCAGTGACTCAGCAAGCCGTGGCTCGAGCTTAT 2205
Query 2164 AGACCAGGACAGAAGAGGAAAGTGTATGCGTACAAGCTCGTAGCTGCGGGGTCACCAGAG 2223
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 2206 AGACCAGGACAGAAGAGGAAAGTATATGCGTACAAGCTCGTAGCTGCGGATTCACCAGAG 2265
Query 2224 GAAGAGAACTACGAAACGTGTACGCGTAAAGAGATGATGTCTAAGATGTGGTTCGAGTGG 2283
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2266 GAAGAGAACTACGAAACATGTACGCGTAAAGAGATGATGTCGAAGATGTGGTTCGAGTGG 2325
Query 2284 AATGTTGGCTCAGGAAGAG-GTGATTTTGGGCTAAGAGCCATTGATGTTGATCACTCCGG 2342
|||||||| |||||||||| | ||||||||| | ||||||||||||| ||||||||||||
Sbjct 2326 AATGTTGGATCAGGAAGAGAG-GATTTTGGGTTTAGAGCCATTGATGCTGATCACTCCGG 2384
Query 2343 TGATGCGTTTCTTGAAACGACCAAGATGAAGGAAGATATCAAGTGTTTATACACAA-GGT 2401
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2385 TGATGCGTTTCTTGAAACGACCAAGATGAAGGAAGATATCAAGTGTTTATACACAAAGGT 2444
Query 2402 AAA 2404
|||
Sbjct 2445 AAA 2447
Score = 315 bits (170), Expect = 2e-84
Identities = 202/218 (93%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 9 CACAGCTTGGACTTTGAGGTCACGTAGCAGGAGCATTACTCAAGAAGAACTTGCCAAGCG 68
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 CACAGCTTGGAATTTAAGGTCACGTAGCAGGAGCATTACTCAAGAAGAACTTGCCAAGCG 65
Query 69 TCCCGACCCGTTCAGTGTACCGAATCTTCTTGATGGGCTTGAAGATGGTGTATACGGATG 128
||| ||||| ||| || |||||||||| ||||||||||||||||||||| |||||||| |
Sbjct 66 TCCTGACCCATTCTGTCTACCGAATCTCCTTGATGGGCTTGAAGATGGTTTATACGGACG 125
Query 129 TCTTGCTGATAATGTTAAGAGACTTTGTAAGCTGAGACAGGAATATTTGAATGGTTCTAT 188
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 126 TCTTGCTGATGATGTAAAGAGACTTTGTAAGCTGAGACAGGAATATTTGAATGGTTCCAT 185
Query 189 CTCACTGGAAGATATCGAAGCTAGAGAAGAGAAAAAAC 226
|||| |||||||||||||||||||| |||| || ||||
Sbjct 186 CTCATTGGAAGATATCGAAGCTAGACAAGACAACAAAC 223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121133915085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5