BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481014
Length=1627
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21500.2 | Symbols: | RING/U-box superfamily protein | chr2... 1877 0.0
> AT2G21500.2 | Symbols: | RING/U-box superfamily protein | chr2:9207669-9210231
REVERSE LENGTH=1771
Length=1771
Score = 1877 bits (1016), Expect = 0.0
Identities = 1285/1409 (91%), Gaps = 41/1409 (3%)
Strand=Plus/Plus
Query 1 AACTTCCCGGCGACGTTCTCCGACTTCCGAGAGCAGGTTTTGAGGTGGTTTTATG-G--- 56
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 89 AACTTTCCGGCGACGTTTTCCGACTTCCGAGAGCAGGTTTTGAGGTGGTTTTATGCGCCA 148
Query 57 ----ATCTAACCGGAGTGTCTTTGTGTGGTGCTTAGTAGTTTTCAGTCACACTCTTCAGT 112
|||||||||||||||| |||| |||||||||||||||||| | |||| |||||||
Sbjct 149 AAACATCTAACCGGAGTGTCGTTGTACGGTGCTTAGTAGTTTTCAATAACACGCTTCAGT 208
Query 113 TATGGGGAATGCTTGTTGTGTCGCTGCTCGAGATAAAATGGTTGTGTCTAATATATCGGC 172
||||||||||||||||||||| ||| ||||||| |||||||||||| |||||| ||| ||
Sbjct 209 TATGGGGAATGCTTGTTGTGTTGCTACTCGAGACAAAATGGTTGTGCCTAATACATCAGC 268
Query 173 AGTCGAGAATTTGCAAAGAAACAATGTGAATGTGAGGTATTCTCCTAATTGGAGCTTTCG 232
|||||||||||| ||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 269 AGTCGAGAATTTTCAAAGAAAC------AATGTGAGGTATTCTCCTAACTGGAGCTTCCG 322
Query 233 ATGGGATAAT--A-GAGGACGAGTGGCAGGTGAAGAGACCTCTGTCAGTTGGTTATCTGA 289
|||||||||| | ||||||| |||||||| |||||||||||||| |||| |||||||||
Sbjct 323 ATGGGATAATAGAGGAGGACGCGTGGCAGGGGAAGAGACCTCTGTTAGTTTGTTATCTGA 382
Query 290 TGGGATTAGTCGTAACGATGTGTCTGATGTCAAATCGGAATCTGCTTTTGTATCATCACA 349
| ||||||||||||||||||| |||||||||||||| ||| ||||| |||||||||||||
Sbjct 383 TCGGATTAGTCGTAACGATGTCTCTGATGTCAAATCTGAAACTGCTCTTGTATCATCACA 442
Query 350 AGGGTCTCCTTTGGACAATTTTCAGGCGCAGTCATGGCAGAAGTCTCCTTCTTCAGATCA 409
||| ||||||||||||||||||||| |||||||||||||||| |||||| |||| |||||
Sbjct 443 AGGTTCTCCTTTGGACAATTTTCAGACGCAGTCATGGCAGAAATCTCCTGCTTCTGATCA 502
Query 410 ATC-TTTT---G-CTT--C-C-ATTGGCACCGTCTCTGAACAGATCACCCAGAAAACTAA 460
||| |||| | || | | |||| | | |||||||||||||||||||| ||||| ||
Sbjct 503 ATCATTTTCAAGAATTGCCTCTATTGACTCTGTCTCTGAACAGATCACCCAAAAAACAAA 562
Query 461 TGATTCAACCGACCCTGCTTTTTATCCATCTCCTGCAAAACTGTCTCTTTCATTGGCTTC 520
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 563 TGATTCAACCGACCCTACTTATTATCCATCTCCTGCAAAACTGTCTCTTTCATTGGCTTC 622
Query 521 TCAACCATCATCCTTCTCAGCGTCACCACTGTCATCCCAGAGCCACTTGCCAATGCCACC 580
|||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||
Sbjct 623 TCAACCATCATCCTTCTCAGTGTCACCACTGTCAAGTCAGTCCCACTTGCCAATGCCACC 682
Query 581 TGCAAGTTCGTCGCAGTTGAAGCTAACACCGCCCCCTTGTTTATCAAAGCAAGTCTCAGA 640
||||||||| || || || ||||| |||||||||||| || ||||||||||||||||| |
Sbjct 683 TGCAAGTTCATCCCAATTAAAGCTGACACCGCCCCCTCGTCTATCAAAGCAAGTCTCATA 742
Query 641 TGGTCGAATCTTTGGATTCACCTCACCGAGCAGAAGCTCAGCAACTGAAGAGAGGCTGGG 700
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 TGGTCAAATCTTTGGATTCACCTCACCGAGCAGAAGCTCAGCAACTGAAGAGAGGCTGGG 802
Query 701 GAATGAATCTCAGTCTGATGGTTGGTCCATGCAAGCCTTTTCTGAAATGATGGCGTATTC 760
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 803 GAATGAATCTCAGTCTGATGGTTGGTCCATGCAAGCTTTTTCTGAAATGATGGCGTATTC 862
Query 761 TCGCAGAGAGTCTTGCTCTTCCGATAACGAGTGCTTTGGGCTTCGTCGTGACAAGATAGA 820
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 863 TCGCAGAGAGTCTTGCTCTTACGATAACGAGTGCTTTGGGCTTCGTCGTGACAAGATAGA 922
Query 821 CAAT-TATGGAAATAGAAAGTCCAATGATCAGCAAAACTGTGGTGCTTGCTCGAGATCCT 879
|||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 CAATCT-TGGAAGTAGAAAGTCCAATGATCAGCAAAACTGTGGTGCTTGCTCGAGATCCT 981
Query 880 TGTCTGAGAAATCTTTGTTGAGTAGCCAAAAGATCTTTGCCACTAATGAGCTCTCTATCG 939
||||||||||||||||||||||||||||||| |||||||||||||| |||||||| | |
Sbjct 982 TGTCTGAGAAATCTTTGTTGAGTAGCCAAAAAATCTTTGCCACTAACGAGCTCTCCGTAG 1041
Query 940 CTGCAATAT-TAGCTTGTGGGCACGTCTATCATTCAGAGTGTTTAGAGCAGATGACACCT 998
|||| || | |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 CTGCGAT-TCTAGCATGTGGGCACGTCTATCATTCAGAGTGTTTAGAGCAGATGACACCT 1100
Query 999 GAAATCGACAAATTCGACCCTCCTTGTCCCATCTGCACCCTGGGTGAGAAGAAAACATTC 1058
||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1101 GAAATCGACAAATTCGATCCTTCTTGTCCCATCTGCACACTGGGTGAGAAGAAAACATTC 1160
Query 1059 AAACTGTCGGAAAAAGCATTAAAGGCAGATTTGGAAATGAAAGCTAGACACAACAAGAGA 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 AAACTGTCGGAAAAAGCATTAAAGGCAGATTTGGAAATGAAAGCTAGACACAACAAGAGA 1220
Query 1119 CTAAGAAACCGCGTTGTGGACAGCGATGACTTTGTCATGTTTAATAACAACCACAAAGCG 1178
||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||
Sbjct 1221 CTAAGAAACCGCGTTGTGGACAGCGATGAATTTGTCAAGTTTAATAACAACCACGAAGCG 1280
Query 1179 GCAGCAACAGTAGCAGCATACAAAGGCAAAGCCCCAAAGCTGCTATCGAGTTCAAGCTTG 1238
|||| ||| | ||||||||| ||| ||||||||||| |||| ||||||||||||
Sbjct 1281 GCAG------TAG--G-ATACAAAGGTAAAACCCCAAAGCTGATATCAAGTTCAAGCTTG 1331
Query 1239 AGAAGCTATTCCCCAAAGCCTTTCCTTGCGAGACACTTCTCTTTCGGATCCAGAAGTAAT 1298
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1332 AGAAGCTATTCCCCAAAGCCTTTCCTTGCTAGACACTTCTCTTTCGGGTCCAGAAGTAAT 1391
Query 1299 AGTGTTAAAATCACGAAA-GAGAATCATTCCGCGAGCTCTCACAGAAAGAAAGGCTTCTT 1357
||||||||| || | ||| |||| ||||||| ||||||||| |||||||||||||||||
Sbjct 1392 AGTGTTAAA-TCCCCAAAAGAGATTCATTCCCCGAGCTCTCTTAGAAAGAAAGGCTTCTT 1450
Query 1358 TTGGACCAAATCTAGCAAACTTTGAAACT 1386
||||||||||||||||||| |||||||||
Sbjct 1451 TTGGACCAAATCTAGCAAAATTTGAAACT 1479
Score = 156 bits (84), Expect = 7e-37
Identities = 121/137 (88%), Gaps = 9/137 (7%)
Strand=Plus/Plus
Query 1443 GTTT-TGTGTGTATTACAGAAAATTTTCTCACAAGTCTCCC---Attttttt-ttt-tGC 1496
|||| ||| |||||||||||||| |||||||| |||||||| |||||||| ||| |||
Sbjct 1636 GTTTGTGTATGTATTACAGAAAAGTTTCTCACTAGTCTCCCATTATTTTTTTGTTTGTGC 1695
Query 1497 ATTCCCAATTACACTTGTAAATATATATTTATAATAATATAAGGTAAAA-TGATCTGACA 1555
||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||| |
Sbjct 1696 ATTCCCAATTACACTTGTAAATATATAATTATAACAATATAAGGTAAAAATGATCTGGCT 1755
Query 1556 GTGCACCAG-AGGATGT 1571
||||||||| ||| |||
Sbjct 1756 GTGCACCAGTAGG-TGT 1771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80371072545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5