BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481016
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21510.1 | Symbols: | DNAJ heat shock N-terminal domain-con... 1803 0.0
AT4G39150.1 | Symbols: | DNAJ heat shock N-terminal domain-con... 924 0.0
> AT2G21510.1 | Symbols: | DNAJ heat shock N-terminal domain-containing
protein | chr2:9210655-9213058 REVERSE LENGTH=1324
Length=1324
Score = 1803 bits (976), Expect = 0.0
Identities = 1101/1160 (95%), Gaps = 13/1160 (1%)
Strand=Plus/Plus
Query 1 TAGAATCGAGAG-TTTTCGTTGCCCCCATTTACATTTCTTCACGATCATCATTATGGTGA 59
|||||||||||| | || ||||||||||||||||||||| |||||||||||| |||||||
Sbjct 46 TAGAATCGAGAGATATT-GTTGCCCCCATTTACATTTCTGCACGATCATCATCATGGTGA 104
Query 60 AGGAGAATGAGTACTACGAGATCTTAGGCGTCAAAACTGATGCTTCCGATGCTGAGATTA 119
| |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 105 AAGAGACTGAATACTACGAGATCTTAGGCGTCAAAACTGATGCTTCAGATGCTGAGATTA 164
Query 120 AAAAGGCTTACTACTTAAAAGCAAGGAAAGTTCACCCAGACAAGAACCCTGGAGACCCTC 179
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 165 AAAAGGCTTACTACTTAAAAGCAAGGAAAGTTCATCCAGACAAGAACCCTGGAGACCCTC 224
Query 180 AAGCTGCTAAGAACTTTCAGGTTTTAGGTGAGGCTTATCAGGTTCTGAGCAATCCGGAGA 239
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 225 AAGCTGCTAAAAACTTTCAGGTTTTAGGTGAGGCTTATCAGGTTCTAAGCAATCCGGATA 284
Query 240 AGCGAGCAGCTTATGACAAATATGGCAAAGAAGGGGTCCAACAGGATGCAATGGTTGATC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 AGCGAGCAGCTTATGACAAATATGGCAAAGAAGGGGTCCAACAGGATGCAATGGTTGATC 344
Query 300 CTGCAGCTGTATTTGGTATGCTTTTCGGAAGCGAAGTCTTTGAAGAATATGTTGGCCAGC 359
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 345 CTGCAGCTGTATTTGGTATGCTTTTCGGAAGCGAAGTCTTTGAAGAATACGTTGGCCAGC 404
Query 360 TTGCACTTGCTTATTTGGCATCAATCGAAGCTGACTTAGAATCACATGAGCCTGAAATCA 419
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 405 TTGCACTTGCTTATTTGGCATCTATCGAAGCTGACTTAGAATCACATGACCCTGAAATCA 464
Query 420 GAAAGCAAATGCTTCAAGACAAGATCAAAGCTCTACAAAAGGAGAGGGAAGACAAACTCG 479
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 465 GAAAGCAAATGCTTCAAGACAAGATCAAAGCTCTTCAAAAGGAGAGGGAAGACAAGCTCG 524
Query 480 CCGCTACATTGAAAAACAAACTTGAACCGTTTGTAGAAGGACAAACCA-ATGAATTTATC 538
|||||||||||||||||||||||||||| ||||| ||| ||||||| | |||||||||||
Sbjct 525 CCGCTACATTGAAAAACAAACTTGAACCCTTTGTGGAAAGACAAAC-AGATGAATTTATC 583
Query 539 GAATGGGCAAACGAAGAGGCAAAGCGGCTTTCTTCTGCCGGTTTTGGCGAGGCAATGATG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 GAATGGGCAAACGAAGAGGCAAAGCGGCTTTCTTCTGCCGGTTTTGGCGAGGCAATGATG 643
Query 599 CATACTCTTGGTTACATTTACACAAGAAAAGCTGCTAAAGAAATCGGTAAAGACAAGCGG 658
|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 644 CATACTATTGGTTACATTTACACAAGAAAAGCTGCTAAAGAAATCGGGAAAGACAAGCGA 703
Query 659 TATATGAAAGTGCCGTTCTTAGCGGAATGGGTGCGTGACAAAGGCCACCATATGAAATCT 718
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 704 TATATGAAAGTACCATTCTTAGCTGAATGGGTGCGTGACAAAGGCCACCATATGAAATCT 763
Query 719 CAAGTGATGGCTGCTTCTGGTGCGGTTTCATTACTTCAGTTGCAGGATGAAGTGAACAAG 778
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 764 CAAGTGATGGCTGCTTCTGGTGCGGTTTCGTTACTTCAGTTGCAGGATGAAGTAAACAAG 823
Query 779 TTGAATGAACACCAAGGAGAGAACAAAGAGGAGCATATTCAGAAAGCCATTGAAGCTAAA 838
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 824 TTGAATGAACACCAAGGAGAGAACAAAGAGGAACATATTCAGAAAGCTATTGAAGCTAAA 883
Query 839 ATGGATGCTTTACTTCAATCTCTTTGGCAAATCAATGTTCTCGACATCGAATCCACGCTA 898
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 ATGGATGCTTTGCTTCAATCTCTTTGGCAAATCAATGTTCTCGACATCGAATCCACGCTA 943
Query 899 TCTCGTGTTTGCCAATCTGTTCTTAAAGATCCAAGTGTTTCCAAGGATGTTCTTCGAGCT 958
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 944 TCTCGTGTTTGCCAATCTGTGCTTAAAGATCCAAGTGTTTCGAAGGATGTTCTTCGAGCT 1003
Query 959 CGTGCCATAGGACTGAAGAAACTTGGAACGATCTTCCAGGGTGCCAAGAAGCCGTACACG 1018
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1004 CGTGCCATAGGACTGAAGAAACTTGGAACGATCTTCCAGGGTGCTAAGAAGCCGTACACG 1063
Query 1019 AGAGGAAGCAGCTTGCGTCGCGAA-CC-CG-CTGTGAAAGTGGACACGGGAGGTTCTTCA 1075
|||||||||||||||||||| ||| || | | |||||| ||||||| ||||||||||||
Sbjct 1064 AGAGGAAGCAGCTTGCGTCGGGAAGCCACCACCGTGAAAATGGACACCGGAGGTTCTTCA 1123
Query 1076 AAGGCGACGTCTTGAAACTCCG-ATCACCGGAA-T-CTAAATTCTTTTATTGGCTGAATT 1132
|||||||||||||||||||||| | || || | || |||||||||||| |||| |
Sbjct 1124 AAGGCGACGTCTTGAAACTCCGGA--ACTTAAAATGCTGT-TTCTTTTATTGGTTGAAGT 1180
Query 1133 TGGATTTGTCCTTTGTTTTT 1152
||||||||||||| ||||||
Sbjct 1181 TGGATTTGTCCTTCGTTTTT 1200
> AT4G39150.1 | Symbols: | DNAJ heat shock N-terminal domain-containing
protein | chr4:18233485-18236064 REVERSE LENGTH=1255
Length=1255
Score = 924 bits (500), Expect = 0.0
Identities = 840/1001 (84%), Gaps = 36/1001 (4%)
Strand=Plus/Plus
Query 52 TATGGTGAAGGAGAATGAGTACTACGAGATCTTAGGCGTCAAAACTGATGCTTCCGATGC 111
|||||||||||||| |||||||||||| || ||||||||||| | ||| || || | |||
Sbjct 51 TATGGTGAAGGAGAGTGAGTACTACGACATATTAGGCGTCAAGATTGACGCCTCTGGTGC 110
Query 112 TGAGATTAA-AAAGGCTTACTACT-TAAAAGCAAGGAAAGTTCACCCAGACAAGAACCCT 169
||||||||| ||| ||||| || | | |||||||| ||||||| |||||||||||||||
Sbjct 111 TGAGATTAAGAAA-GCTTATTA-TGTTCAAGCAAGGCAAGTTCATCCAGACAAGAACCCT 168
Query 170 GGAGACCCTCAAGCTGCTAAGAACTTTCAGGTTTTAGGTGAGGCTTATCAGGTTCTGA-G 228
|| || |||||||||||||| ||||||||| | ||||||| |||||||| ||||| | |
Sbjct 169 GGTGATCCTCAAGCTGCTAAAAACTTTCAGATACTAGGTGAAGCTTATCAAGTTCT-AGG 227
Query 229 CAATCCGGAGAAGCG-AGCAGCTTATGACAAATATGGCAAAGAAGGGGTCCAACAGGATG 287
| ||||||||||||| | ||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 228 CGATCCGGAGAAGCGTA-CAGCTTATGACAAATATGGAAAAGAAGGGGTTCAACAGGATG 286
Query 288 CAATGGTTGATCCTGCAGCTGTATTTGGTATGCT-TTTCGGAAGCGAAG-TCTTTGAAGA 345
|||||||||||||||||||||| ||||||||||| ||| || ||||| | ||||||| ||
Sbjct 287 CAATGGTTGATCCTGCAGCTGTGTTTGGTATGCTCTTT-GGTAGCGA-GCTCTTTGAGGA 344
Query 346 ATATGTTGGCCAGCTTGCACTTGCTT-ATTTGGCATCAATCGAAGCTGACTTAGAATCAC 404
|| ||||| || ||||| ||||||| | | | |||||||| ||||| ||||||||
Sbjct 345 TTACGTTGGGCAACTTGCCCTTGCTTCAGCAGCC-TCAATCGATGCTGAATTAGAATCGT 403
Query 405 ATGAGCCTGAAATCAGAAAGCAAATGCTTCAAGACAAGATCAAAGCTCTACAAAAGGAGA 464
|||||||||| || ||||| || |||||||| || ||||||||||| |||||||||| |
Sbjct 404 ATGAGCCTGAGATTAGAAAACAGATGCTTCAGGAAAAGATCAAAGCGATACAAAAGGACA 463
Query 465 GGGAAGACAAACTCGCCGCTACATTGAAAAACAAACTTGAACCGTTTGTAGAAGGACAAA 524
| | |||||| |||| | ||||| |||||| |||||||||||| || || ||||||||||
Sbjct 464 GAGTAGACAAGCTCGTCACTACACTGAAAATCAAACTTGAACCATTCGTGGAAGGACAAA 523
Query 525 CCAATGAATTTATCGAAT-GGGCAAACGAAGAGGCAAAGCGGCTTTCTTCTGCCGGTTTT 583
|| |||||||| | ||| |||| | || ||||||||| |||||||| | || ||||||
Sbjct 524 CCGATGAATTTGTA-AATTGGGCCACCGCAGAGGCAAAACGGCTTTCAACAGCTGGTTTT 582
Query 584 GGCGAGGCAATGATGCATACTCTTGGTTACATTTACACAAGAAAAGCTGCTAAAGAAATC 643
|| ||||||||| | || || |||||||||||||||| |||||||||||||||||| ||
Sbjct 583 GGTGAGGCAATGCTTCACACAGTTGGTTACATTTACACTAGAAAAGCTGCTAAAGAACTC 642
Query 644 GGTAAAG-ACAAGCGGTAT-ATGAAAGTGCCGTTCTTAGCGGAATGGGTGCGTGACAAAG 701
|| |||| | || || | | |||||||| ||||| ||||| |||||||| ||||||||||
Sbjct 643 GG-AAAGGATAAACGTT-TCATGAAAGTACCGTTTTTAGCCGAATGGGTTCGTGACAAAG 700
Query 702 GCCACCATA-TGAAATCTCAAGTGATGGCTGCTTCTGGTGCGGTTT-CATTACTTCAGTT 759
||||||| | | |||||||||||||||||||||||||||||||| | ||||||| |||
Sbjct 701 GCCACCA-AGTAAAATCTCAAGTGATGGCTGCTTCTGGTGCGGTCAAC-TTACTTCTGTT 758
Query 760 GCAGGATGAAGTGAACAAGTTGAATGAACACCAAGGAGAGAACAAAGAGGAGCATATTCA 819
|||||||||||||| |||| ||||| || |||||||||||||| ||| |||||||
Sbjct 759 GCAGGATGAAGTGAGCAAGCTGAAT---CAG---GGAGAGAACAAAGAAGAGAATATTCA 812
Query 820 GAAAGCCATTGAAGCTAAAATGGATGCTTTACTTCAATCTCTTTGGCAAATCAATGTTCT 879
|||||||||||||||||||| |||||| | |||||||| ||||||||||| |||||| |
Sbjct 813 GAAAGCCATTGAAGCTAAAAAGGATGCAATGCTTCAATCCCTTTGGCAAATAAATGTTGT 872
Query 880 CGACATCGAATCCACGCT-ATCTCGTGTTTGCCAATCTGTTCTTAAAGATCCAAGTGTTT 938
||||||||||| || || ||||||||| |||||| | || |||||||||||||||||||
Sbjct 873 TGACATCGAATCAAC-CTTATCTCGTGTCTGCCAAGCGGTGCTTAAAGATCCAAGTGTTT 931
Query 939 CCAAGGATGTTCTTCGAGCTCGTGCCATAGGACTGAAGAAACTTGG-AACGATCTTCCAG 997
| |||||||||||||||||| | || | |||| ||| ||| || || |||| | ||||||
Sbjct 932 CAAAGGATGTTCTTCGAGCTAGAGCTAGAGGATTGAGGAAGCTGGGTAACGTT-TTCCAG 990
Query 998 GGTGCCAAGAA-GCCGTACACGAGAGGAAGCAGCTTGCGTC 1037
||| | ||||| || ||| | |||| || |||||||||||
Sbjct 991 GGTTCTAAGAAAGC-GTATTCTAGAGAAAACAGCTTGCGTC 1030
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525813670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5