BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481019
Length=721
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21530.1 | Symbols: | SMAD/FHA domain-containing protein |... 944 0.0
> AT2G21530.1 | Symbols: | SMAD/FHA domain-containing protein
| chr2:9219324-9220590 FORWARD LENGTH=804
Length=804
Score = 944 bits (511), Expect = 0.0
Identities = 631/687 (92%), Gaps = 15/687 (2%)
Strand=Plus/Plus
Query 1 ACTTCATCTTTTGTTTTTCTAAGATCAATCAGTTTTTATGAAGAGAAAATGGAGATAACA 60
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACTTCATATTTTGTTTTTGTAAGATCAATCAGTTTTTATGAAGAGAAAATGGAGATAACA 60
Query 61 ATATCTCAATTGTGCTCTCGAGTTAAG---------T--T--T--TCATCATCACTGTTG 105
||||| ||||||||||||||||||||| | | | ||||||||||| ||
Sbjct 61 ATATCCCAATTGTGCTCTCGAGTTAAGTTTTCATCATCATCATCATCATCATCACTTTTC 120
Query 106 TGTTTAAATAGAAACAGTAAGAGGAACAACCTAAATGGAGCTGTTTCAGTGAATTACTTG 165
||||| || |||||||||| || |||||||||||||||||||||||||| || | ||||
Sbjct 121 TGTTTCTATGGAAACAGTAATAGAAACAACCTAAATGGAGCTGTTTCAGTAAACTGCTTG 180
Query 166 AAAGAGATTGATCAGATCAGTAATATTAGCTTCACTGCGAAAAAACCGAGAAGTCATGCG 225
| ||||| ||| |||||||||||||||||||||| |||||| ||||| |||||||||||
Sbjct 181 AGAGAGAATGAGCAGATCAGTAATATTAGCTTCATTGCGAAGAAACCAAGAAGTCATGCA 240
Query 226 CCGGTGGTGAGAAAAACACGCGCCTCCTTGGATGAGAATCAGTCCCCAACTTCCGGAGGA 285
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 CCGGTGGTGAGAACAACACGCGCCTCCTTGGATGAGAATCAATCCCCAACTTCCGGAGGA 300
Query 286 GAACGGTGGCTTCTCCAACCAGTTGGTGATGGAGACACAAGACACATTGGTTACAAAGTG 345
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 GAACGGTGGCTTCTCAAACCAGTTGGCGATGGAGACACAAGACACATTGGTTACAAAGTG 360
Query 346 GCGATGCCTGCTCCTTTCGAGATCACCTCGGGACAAGTTACCATCGGACGGCTACCGGAA 405
|| |||||||||||||| |||||| |||| || |||||||||||||||||||||||||||
Sbjct 361 GCAATGCCTGCTCCTTTTGAGATCTCCTCTGGCCAAGTTACCATCGGACGGCTACCGGAA 420
Query 406 AAGGCTGATGTCGTAATTCCTGTGGCCACCGTGTCGGGAGTCCATGCGACAATCAATACC 465
|||||||| ||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 421 AAGGCTGACGTCGTGATTCCTGTTGCCACCGTGTCAGGAGTCCATGCGACAATCAATACG 480
Query 466 AATGAAAACAACCTTCTTGTGACGGATATGAACAGCACCAACGGTACATTTATCGAAGAC 525
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 AATGAAAAGAACCTTCTTGTGACGGATATGAACAGCACCAACGGTACATTCATCGAAGAC 540
Query 526 AAACGTCTAATTCCTGGTGTCGCCGCTCCTGCCTTTCCCGGAACCCGAATCACCTTTGGA 585
|||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 541 AAACGTCTAATTCCTGGTGTTGCTGCTCCTGCCTTTCCCGGAACACGAATCACCTTTGGA 600
Query 586 GATACAAATCTAGCAATTTTCCGTGTTTTCAAGCTCCAAGATAGTGAAGAATCCACAGAG 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 601 GATACAAATCTAGCAATTTTCCGTGTTTTCAAGCTCCAAGATAGTGAAGAATCCATAGAG 660
Query 646 AAACCAACCACAGAGTAACACAAAACC 672
|||||||| ||||||||||||||||||
Sbjct 661 AAACCAACTACAGAGTAACACAAAACC 687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34962966312
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5