BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481021
Length=2055
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21540.1 | Symbols: ATSFH3, SFH3 | SEC14-like 3 | chr2:92205... 3099 0.0
AT4G39180.1 | Symbols: SEC14, ATSEC14 | Sec14p-like phosphatidy... 950 0.0
> AT2G21540.1 | Symbols: ATSFH3, SFH3 | SEC14-like 3 | chr2:9220556-9224496
REVERSE LENGTH=2106
Length=2106
Score = 3099 bits (1678), Expect = 0.0
Identities = 1956/2084 (94%), Gaps = 43/2084 (2%)
Strand=Plus/Plus
Query 1 TTCTTCTCCTTACAAAAATGGCTtcttctctttctctctctc-t--c--tTACAAGTTAC 55
||||||||| ||||||||||||||||||||||||||| |||| | | |||||||||
Sbjct 10 TTCTTCTCCCTACAAAAATGGCTTCTTCTCTTTCTCTTTCTCTTACCAGGGACAAGTTAC 69
Query 56 AATG----TAAAGGTCAAACC-TTTTTCCAATTAGAACCCTTTTATTGGATTAAGCTAAA 110
|||| ||||||||||||| ||||||||| || |||||||||| |||||| ||||||
Sbjct 70 AATGTAAATAAAGGTCAAACCTTTTTTCCAA-TAAAACCCTTTTAATGGATTGTGCTAAA 128
Query 111 ActctctctctctctctctctTTGGATTTTCAAAACAAAGAAAGCTTAAATCCAGACTAT 170
| |||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 129 A--------CTCTCTCTCTCTTTGGATTTTCAAAACAAAGAAATCTTAAATCCAGACT-T 179
Query 171 AAAGCATGACGGATACAATGTCTACTCATATGGATCGACATAATAAGCTAGATTATGATG 230
|| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
Sbjct 180 TAACCATGACGGATACAATGTCTGCTCATATGGATCGACATAATAAGCTTGATTATGACG 239
Query 231 GCTCGGAGGATGAAAAGAAGACAAAGCTTTGTTCCTTGAAGAAGAAAGCAATCAATGCCT 290
|||| |||||||||||||| ||||||||||||||| | ||||||||||||||||||||||
Sbjct 240 GCTCAGAGGATGAAAAGAAAACAAAGCTTTGTTCCCTCAAGAAGAAAGCAATCAATGCCT 299
Query 291 CCAACAAATTCAAACACTCTTTCACCAAGAGAACTCGAAGGAACAGCCGAGTCATGTCTG 350
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCAACAAATTCAAACACTCCTTCACCAAGAGAACTCGAAGGAACAGCCGAGTCATGTCTG 359
Query 351 TCTCTATCGTTGACGACATTGATCTTGAAGAGCTTCAAGCTGTTGACGCTTTCCGTCAAG 410
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCTCTATTGTTGACGATATTGATCTTGAAGAGCTTCAAGCTGTTGACGCTTTCCGTCAAG 419
Query 411 CTCTTATCTTGGACGAGCTCCTTCCTTCGAAACACGATGATCATCACATGATGCTTAGGT 470
|||||||| | |||||||| || ||||| |||||||||||||||||||||||||| ||||
Sbjct 420 CTCTTATCCTAGACGAGCTTCTCCCTTCCAAACACGATGATCATCACATGATGCTGAGGT 479
Query 471 TTTTGAGGGCAAGGAAGTTTGATCTTGACAAAGCAAAGCAAATGTGGACTGATATGATCC 530
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 480 TTCTGAGGGCAAGGAAGTTTGATCTTGAGAAAGCAAAGCAAATGTGGACTGATATGATCC 539
Query 531 ATTGGAGGAAAGAGTTTGGTGTTGACACAATCATGGAGGACTTTGATTTCAAGGAAATAG 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 540 ATTGGAGGAAAGAGTTTGGTGTTGACACAATCATGGAGGACTTTGATTTCAAGGAGATTG 599
Query 591 ACGAAGTCCTCAAGTACTATCCTCAAGGTTACCATGGTGTTGACAAAGAGGGAAGGCCTG 650
| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 600 ATGAAGTCCTCAAGTACTACCCTCAAGGTTACCATGGTGTTGACAAAGATGGAAGGCCTG 659
Query 651 TTTACATAGAGAGGCTAGGCCAAGTGGATGCCACAAAGCTGATGCAAGTCACTACCATCG 710
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 660 TTTACATTGAGAGGCTAGGCCAAGTTGATGCCACAAAGCTGATGCAAGTCACTACCATCG 719
Query 711 ATAGGTATGTCAAGTACCATGTGAGAGAGTTTGAGAAGACTTTCAATATCAAATTACCAG 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATAGGTATGTCAAGTACCATGTGAGAGAGTTTGAGAAGACTTTCAATATCAAATTACCAG 779
Query 771 CTTGCTCCATTGCTGCCAAGAAGCATATTGATCAGAGCACCACCATCTTGGATGTGCAAG 830
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTTGTTCCATTGCTGCCAAGAAGCATATTGATCAGAGCACCACCATCTTGGATGTGCAAG 839
Query 831 GCGTGGGGTTGAAGAACTTCAGTAAGGCTGCAAGGGATCTTCTTCAGCGTATCCAGAAGA 890
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GCGTGGGGTTGAAGAGCTTCAGTAAGGCTGCAAGGGATCTTCTTCAGCGTATCCAGAAGA 899
Query 891 TCGATAGCGACAACTACCCTGAGACATTGAACCGTATGTTCATTATCAACGCTGGTTCTG 950
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 900 TCGATAGCGATAACTACCCTGAGACATTGAACCGTATGTTCATTATCAACGCTGGTAGTG 959
Query 951 GATTCAGGCTTCTGTGGAGCACTGTGAAATCTTTCCTTGACCCAAAGACCACCGCAAAGA 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GATTCAGGCTTCTGTGGAGCACTGTGAAATCTTTCCTTGACCCAAAGACCACCGCAAAGA 1019
Query 1011 TCCACGTTCTTGGCAACAAATATCAAAGCAAGCTTCTTGAGATTATCGACTCCAATGAAC 1070
| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1020 TTCACGTTCTTGGCAACAAATACCAAAGCAAGCTGCTTGAGATTATCGACTCCAATGAAC 1079
Query 1071 TTCCTGAGTTCTTGGGTGGTAACTGCACTTGTGCAGACAAAGGTGGGTGTATGCGTTCAG 1130
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1080 TTCCTGAGTTCTTGGGTGGTAACTGCACTTGTGCAGACAAAGGTGGATGTATGCGTTCTG 1139
Query 1131 ACAAAGGTCCATGGAACGACCCTGACATCTTCAAGATGGTTCAAAACGGAGAAGGGAAGT 1190
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1140 ACAAAGGTCCATGGAACGACCCTGACATCTTCAAGATGGTTCAGAACGGAGAAGGAAAGT 1199
Query 1191 GCCCAAGGAAGACATTGTCAAACATTGAAGAGAAGACAATCTCAGTGGACGAGAACACAA 1250
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GCCCAAGGAAGACTTTGTCAAACATTGAAGAGAAGACAATCTCAGTGGACGAGAACACAA 1259
Query 1251 CAATGAAATGTGATTCCTTTGCGAAGAACAAATTCGATGCAGAGAACGCGAAATTCATAC 1310
||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1260 CAATGAAATCTGATTCCTTTGCGAAGAACAAATTCGATGCAGAGAACACAAAATTCATAC 1319
Query 1311 CGATGATTGACAAAACTGTGAATGCTACTACTTGGCCTACAAATCTCCACAAGTCAAACT 1370
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1320 CGATGATTGACAAAACTGTGAATGCTTCTACATGGCCTACAAATCTCCACAAGTCAAACT 1379
Query 1371 ATCCCGAACCTGAAGATTTATACTCTGCCGTGAAGCCATCGCAGAGGAGAGGAGGAGAAG 1430
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 ATCCTGAACCTGAAGATTTATACTCTGCCGTGAAGCCATCGCAGAGGAGAGGAGGAGAAG 1439
Query 1431 GATATTTATTCGGAGGCGTGATGTCGTTGATGATGGGGTTAATGACTGTGGTGAGGCTGA 1490
| ||||||||||| || |||||||| ||| |||||||||||||||||||||||||||| |
Sbjct 1440 GTTATTTATTCGGGGGAGTGATGTCTTTGGTGATGGGGTTAATGACTGTGGTGAGGCTAA 1499
Query 1491 CGAAAAACATGCCAAGGAAGCTCACTGAGGCCGCGATTTACGGTGGCGAAGCGGAGAAAG 1550
|||| |||||||||||||||||||||||||| || ||||||||||| |||| ||| ||||
Sbjct 1500 CGAAGAACATGCCAAGGAAGCTCACTGAGGCTGCCATTTACGGTGGTGAAGTGGACAAAG 1559
Query 1551 CAGAGACTACAATGGTGTCAAACCAAGAGTATATGTCGATGGTGAAGAGAATGGCGGAGC 1610
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1560 CAGAGACTACAATGGTGTCAAACCAAGAGTATATGTCGATGGTGAAGAGAATGGCCGAGT 1619
Query 1611 TGGAGGAGAAATGTAGGTCTTTGGACAATCAGCCGGCAGCGTTCTCGCCGGAGAAAGAAC 1670
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1620 TGGAGGAGAAATGTAGGTCTTTGGACAATCAGCCTGCAGCGTTCTCGCCAGAGAAAGAAC 1679
Query 1671 AGATTCTCACTGCTGCTCTTAGCCGTGTCGACGAGCTTGAGCTTCAGTTGGCTCAGACCA 1730
|||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1680 AGATTCTCACCGCTGCTCTCAGCCGTGTCGACGAGCTAGAGCTTCAGTTGGCTCAGACCA 1739
Query 1731 AAAAGACGCTGGAGGAAACCATGGCTACGCAGCATGAGATAATGGCTTATATCGACaaga 1790
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1740 AAAAGACGCTGGAGGAAACCATGGCAACGCAGCATGTGATAATGGCTTATATCGACAAGA 1799
Query 1791 agaaaaagaagaagaagTTCTTCGGATTCTGAAAGACTTGATAATGCATGCCTCAAGACT 1850
|||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||
Sbjct 1800 AGAAAAAGAAGAAGAAGTTCTTTGGATTCTGAAAGACTTGATAATGC---C-TCAAGACT 1855
Query 1851 TTGAAGAAACCTGGAAA--TATATA-A--T---TATT-AT-ACATA-A-A--CATAAATA 1896
||||||||||||||||| |||||| | | |||| || | ||| | | ||||||||
Sbjct 1856 TTGAAGAAACCTGGAAAAATATATATAAATCCATATTTATTATATATATAAACATAAATA 1915
Query 1897 T-ATTCGTGAAGAGTTTTTAAAGATAAAAATGTGG-AAATTTGCTTTCTGTAAATTTTTT 1954
| |||||||||||||||||| |||||||||||||| |||||| |||||||||||| ||||
Sbjct 1916 TTATTCGTGAAGAGTTTTTACAGATAAAAATGTGGGAAATTTTCTTTCTGTAAATGTTTT 1975
Query 1955 GTTATTTGTCCCT--GGAAATATCCGAAAGCTTATGTCTACCACTTATCA-TTCTTTCAC 2011
||| ||||||||| ||||||||| |||||||||||| |||||||||||| |||||||||
Sbjct 1976 GTTGTTTGTCCCTCTGGAAATATCTGAAAGCTTATGTTTACCACTTATCAATTCTTTCAC 2035
Query 2012 ACCTAATTTGTAACGTACTAAAAACAAAAATATATATGTTATAA 2055
|||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2036 ACCTAATTTGTAACGTACCAAAAACAAAAATATATATGTTATAA 2079
> AT4G39180.1 | Symbols: SEC14, ATSEC14 | Sec14p-like phosphatidylinositol
transfer family protein | chr4:18243774-18248805
REVERSE LENGTH=2321
Length=2321
Score = 950 bits (514), Expect = 0.0
Identities = 902/1087 (83%), Gaps = 35/1087 (3%)
Strand=Plus/Plus
Query 165 GACTATAAAGCATGACGGATACAAT-GTCTACTCATATGGATCGACATAATAAGCTAGAT 223
|||| |||| |||| |||||||||| || | |||||||||| |||||||||||| |||||
Sbjct 414 GACTTTAAATCATGGCGGATACAATGGT-TGCTCATATGGACCGACATAATAAGATAGAT 472
Query 224 -TATGATG-GCTCGGAGGATGA-AA-AGA--AGACAAAGCTTTGTTCCT-TGAAGAAGAA 276
| ||| | ||| || ||||| || ||| | ||||||||||| | || | ||||||||
Sbjct 473 GT-TGA-GATCTCAGAAGATGACAAGAGATTA-ACAAAGCTTTGCT-CTCTAAAGAAGAA 528
Query 277 AGCAATCAATGCCTCCAACAAATTCAAACACTCTTTCACCAAGAGAA-CTCGAAGGAACA 335
|| || ||||| | ||||| || || ||||| | ||||||| || ||||||| | |
Sbjct 529 GGCTATAAATGCGACGAACAAGTTTAAGCACTCAATGACCAAGA-AAGGTCGAAGGCATA 587
Query 336 GCCGAGTCATGTCTGTCTCTATCGTTGACGACATTGAT-CTTGAAGAGCTT-CAAGCTGT 393
|||| || || |||||| ||||| || || || ||| | |||||| || ||||| ||
Sbjct 588 GCCGTGTGGCGTGTGTCTCAATCGTCGATGAAATCGATAC-AGAAGAG-TTGCAAGCGGT 645
Query 394 TGACGCTTTCCGTCAAGCTCTTATCTTGGACGAGCTCCTTCCTTCGAAACACGATGATCA 453
||| |||||||||||||||||||| || ||||| || ||||| || || || ||||||||
Sbjct 646 TGATGCTTTCCGTCAAGCTCTTATTTTAGACGAACTACTTCCCTCTAAGCATGATGATCA 705
Query 454 TCACATGATGCTTAGGTTTTTGAGGGCAAGGAAGTTTGATCTTGACAAA-GCAAAGCAAA 512
|||||||||||||||||| ||||||||||| ||||||||||| || ||| || |||||||
Sbjct 706 TCACATGATGCTTAGGTTCTTGAGGGCAAGAAAGTTTGATCTCGA-AAAGGCTAAGCAAA 764
Query 513 TGTGGACTGATATGATCCATTGGAGGAAAGAGTTTGGTGTTGACACAATCATGGAGGACT 572
||||| |||||||| | | ||||||||||| | ||| | ||||| |||||||||||||
Sbjct 765 TGTGGTCTGATATGCTTAACTGGAGGAAAGAATATGGCGCAGACACGATCATGGAGGACT 824
Query 573 TTGATTTCAAGGAAATAGACGAAGTCCTCAAGTACTATCCTCAAGGTTACCATGGTGTTG 632
|||||||||| ||||| || ||||| | ||||| ||||| ||||| || ||||||||||
Sbjct 825 TTGATTTCAAAGAAATCGAAGAAGTGGTTAAGTATTATCCACAAGGATATCATGGTGTTG 884
Query 633 ACAAAGAGGGAAGGCCTGTTTACATAGAGAGGCTAGGCCAAGTGGATGCCACAAAGCTGA 692
|||| || ||||| ||| | || || ||||||||||||||||| ||||||||||||||||
Sbjct 885 ACAAGGAAGGAAGACCTATCTATATTGAGAGGCTAGGCCAAGTTGATGCCACAAAGCTGA 944
Query 693 TGCAAGTCACTACCATCGATAGGTATGTCAAGTACCATGTGAGAGAGTTTGAGAAGACTT 752
|| |||| || || || |||||||| || ||||||||||||| |||||| ||||||||||
Sbjct 945 TGAAAGTGACCACAATTGATAGGTACGTGAAGTACCATGTGAAAGAGTTCGAGAAGACTT 1004
Query 753 TCAATATCAAATTACCAGCTTGCTCCATTGCTGCCAAGAAG-CATATTGATCAGAGCACC 811
|||| ||||||| || ||||| ||||| ||||| || | | || ||||||||||||||
Sbjct 1005 TCAACGTCAAATTCCCTGCTTGTTCCATCGCTGCGAA-ACGACACATTGATCAGAGCACA 1063
Query 812 ACCATCTTGGATGTGCAAGGCGTGGGG-TTGAAG-AACTTCAGTAAGGCTGCAAGGGATC 869
|| ||||||||||| |||||||||||| || || ||||||| || ||||||| ||||
Sbjct 1064 ACGATCTTGGATGTTCAAGGCGTGGGGCTT--AGTAACTTCAACAAAGCTGCAAAAGATC 1121
Query 870 TTCTTCAGCGTATCCAGAAGATCGATAGCGACAACTACCCTGAGACATTGAACCGTATGT 929
|||||||| |||| ||||| ||||| | ||| |||||||||||||| ||||||||||||
Sbjct 1122 TTCTTCAGAGTATTCAGAAAATCGACAACGATAACTACCCTGAGACGCTGAACCGTATGT 1181
Query 930 TCATTATCAACGCTGGTTCTGGATTCAGGCTTCTGTGGAGCACTGTGAAATCTTTCCTTG 989
|||| ||||| ||||||| ||| || |||||| | |||| ||| ||||||||||||||||
Sbjct 1182 TCATCATCAATGCTGGTTGTGGGTTTAGGCTTTTATGGAACACAGTGAAATCTTTCCTTG 1241
Query 990 ACCCAAAGACCACCGCAAAGATCCACGTTCTTGGCAACAAATATCAAAGCAAGCTTCTTG 1049
|||||||||| || |||||||| |||||||||||||||||||| |||| ||| ||||| |
Sbjct 1242 ACCCAAAGACTACAGCAAAGATTCACGTTCTTGGCAACAAATACCAAACCAAACTTCTAG 1301
Query 1050 AGATTATCGACTCCAATGAACTTCCTGAGTTCTTGGGTGGTAACTGCACTTGTGCAGACA 1109
| || || ||| |||||||||| |||||||||||||||||||| ||||| || |||||||
Sbjct 1302 AAATCATTGACGCCAATGAACTGCCTGAGTTCTTGGGTGGTAAGTGCACCTGCGCAGACA 1361
Query 1110 AAGGTGGGTGTATGCGTTCAGACAAAGGTCCATGGAACGACCCTGACATCTTCAAGATGG 1169
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1362 AAGGTGGATGTATGCGTTCAGACAAAGGTCCATGGAACGACCCTGAGATCTTCAAGTTGG 1421
Query 1170 TTCAAAACGGAGAAGGGA-AGTGCC--C-AAGGAAGACATTGTCAAACATTGAAGAGAAG 1225
|||| ||||| ||||| | | |||| | ||||| | | |||||| || || || |||
Sbjct 1422 TTCAGAACGGTGAAGGTAGA-TGCCTGCGAAGGA-G-C-TTGTCAGGGATCGAGGAAAAG 1477
Query 1226 ACAATCT 1232
|||||||
Sbjct 1478 ACAATCT 1484
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101856905805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5