BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481023
Length=1004
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21560.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1236 0.0
> AT2G21560.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G39190.1);
Has 3685 Blast hits to 2305 proteins in 270 species: Archae
- 0; Bacteria - 156; Metazoa - 1145; Fungi - 322; Plants -
177; Viruses - 6; Other Eukaryotes - 1879 (source: NCBI BLink).
| chr2:9230268-9231508 REVERSE LENGTH=1241
Length=1241
Score = 1236 bits (669), Expect = 0.0
Identities = 927/1043 (89%), Gaps = 52/1043 (5%)
Strand=Plus/Plus
Query 1 ATGGATTCGCTTAGTACTCAGAAGGCTAAACCAAGAAAGATGAAGATTGTTGTGAAGAAG 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 212 ATGGATTCGCTTAGTACTCAGAAGGCTAAACCAAGAAAGATGAAGGTTGTTGTGAAGAAG 271
Query 61 TCTCGGGCTCAAATACTCTTAGATTTCTTTTACCGGGTGATCGAGATAACCCTAGTTATG 120
|||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 272 TCTCGGGCTCAAGTACTCTTAGATTTGTTTTACCGGGTGATCGAGATAACTCTAGTTATA 331
Query 121 GTTACAGTAGCCAAACTCTGTTACCAACTAGTCATCACGTTCGAGAGCTCTGGTCTCGCG 180
|||| ||||||| |||||||||||||||||||||||| | |||||||||||||||||
Sbjct 332 ATTACTCTAGCCAAGCTCTGTTACCAACTAGTCATCACGGTAGAGAGCTCTGGTCTCGCA 391
Query 181 GGTTTTCTCATTAACCGTCACCTTGCTTTCGTCTTGGGGAATGCGATAGTTATCGCTATA 240
|||||||||| |||||||||||||||||||||||||||||| ||||||| ||| | |||
Sbjct 392 AGTTTTCTCATCAACCGTCACCTTGCTTTCGTCTTGGGGAATACGATAGTCATCACCATA 451
Query 241 GTCTTCAAGTGCGGGTTCTTTGCGAATCAAGAAACTGATGCACGGAGAAACAGCAATGAT 300
||| ||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 452 GTCGTCAAGTGTGGGTTCTTTGCGAATCAAGAAACTGATGCACGGAGAAACAGAAACGAT 511
Query 301 TTTTACGACGAGTTTGTTCGGGAGAGCTCAAGAGGAGAACGGAGTTTACACACCGATGTG 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 512 TTTTACGACGAGTTTGTTCGGGAGAGCTCAAGAGGAGAACGGAGGTTACACACCGATGTG 571
Query 361 ATATGCAGAGAAAAACAGAGTGAAGTAGAGAGCGTGGCAAAACAGAGCATTGAAGAAAGC 420
|||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| |
Sbjct 572 ATATGCAGAGAAAAACAGAGTGAAGTCGAGAGCGTTGCAAAACAAAGCATTGAAGAAAAC 631
Query 421 AGATCAAAACAGAGCATCGAAGATAAGAGACAAAGCAGAGCAAAACAGAGCATGTCCGAG 480
||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||
Sbjct 632 AGAGCAAAACAGAGCATTGAAGATAAGAGACAAAGCAGAGCAAAACCGAGCATGTCAGAG 691
Query 481 AACAGGGCaaaacagagcactgaagaaaagagagagaaac--aaaa---ca-aga-c--t 531
|||||||||||||||||||||||||||||||||||||||| |||| | ||| | |
Sbjct 692 AACAGGGCAAAACAGAGCACTGAAGAAAAGAGAGAGAAACTTAAAAAGTCTGAGATCAGT 751
Query 532 g--aga-a---cagtggtgaagagagagagaagaaggacataactgtgaagagacagaga 585
| ||| | |||||| || ||||| ||||||||||||||||||||||||| ||| |||
Sbjct 752 GGCAGACAGAGCAGTGGCGATGAGAGTGAGAAGAAGGACATAACTGTGAAGAAACAAAGA 811
Query 586 caAATCATTGCTCAAAAGCAGGAAAGTCCAATGAAGAGTTACGAAAGGAGTCGGTCGGAG 645
|||||| |||||||||| || || || ||||||||||||||||||||||| ||||| |||
Sbjct 812 CAAATCGTTGCTCAAAATCAAGATAGCCCAATGAAGAGTTACGAAAGGAGCCGGTCAGAG 871
Query 646 AATCAGGAGGGCTCGAAGAAGAGCACTTGTGGAAAACTGAAGAGATC-GAAGACAGAGAG 704
||||| ||||||||||||||||| |||||| | ||||||||||||| || |||||||||
Sbjct 872 AATCACGAGGGCTCGAAGAAGAGTTCTTGTGTACAACTGAAGAGATCAGA-GACAGAGAG 930
Query 705 ACCTGCTGAT-GAATTTGTTTCGGATGAGGAACTACGATACAAGATCGAGTCTTTCATTG 763
|||||||||| ||||| ||||| ||||| || ||||||||||| ||||||||||||||||
Sbjct 931 ACCTGCTGATAGAATT-GTTTCTGATGATGAGCTACGATACAAAATCGAGTCTTTCATTG 989
Query 764 CGAGACAGAGGAGGAACCAAAAGGATGAAGAGTa----a--a---aaaa-gca-aag-a- 810
| ||||||||||||||||||||||||||||||| | | |||| | | || |
Sbjct 990 CTAGACAGAGGAGGAACCAAAAGGATGAAGAGTTCTGTATTATCTAAAATGTATAAATAC 1049
Query 811 -aaaaa--aaa-a-gaaa----gaaaaaCTTTGGTTTATGCAAAATAGCATTCACATATA 861
||||| ||| | |||| |||||||||| |||||||||| || ||||||||||||
Sbjct 1050 TAAAAAGCAAAGAAGAAAAAAAGAAAAACTTTAGTTTATGCAA--TACCATTCACATATA 1107
Query 862 TATATTTGTGAGTGTTTGTATATATACGGGTAAAAATATTTCAATGCCCGAGCATAAAAT 921
| | | ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1108 T-T-T--GTGAGTGTTTGTATATATATGGGTAAAAATATTTCAATGCCCGAGCATAAATT 1163
Query 922 CTTGTTTTAGCTTTTCtttttttttttGTTTCTTTGTATAATTTTGTTCATCTTATATAT 981
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1164 GTTGTTTTAGCTTTTCTTTTTTTG---GTTTCTTTGTATAATTTTGTTAATCTTATATAT 1220
Query 982 ATTATGAAGTATAAGTTTTCTGT 1004
| ||||||||||||||||||||
Sbjct 1221 -T-ATGAAGTATAAGTTTTCTGT 1241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49179229913
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5