BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481027
Length=756
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21600.1 | Symbols: ATRER1B, RER1B | endoplasmatic reticulum... 977 0.0
AT4G39220.1 | Symbols: ATRER1A | Rer1 family protein | chr4:182... 577 6e-164
> AT2G21600.1 | Symbols: ATRER1B, RER1B | endoplasmatic reticulum
retrieval protein 1B | chr2:9242801-9244833 FORWARD LENGTH=988
Length=988
Score = 977 bits (529), Expect = 0.0
Identities = 609/648 (94%), Gaps = 4/648 (1%)
Strand=Plus/Plus
Query 86 TTCTTTACCATCCGTTGCAAGAATCACAATGGATGGAAGTGGTGGTGACAGTGGTTCGAT 145
||||| |||||||||| ||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 119 TTCTTCACCATCCGTTTCAAGAATAACAATGGAAGGAAGCGGTGGTGACAGTGGTTCGAT 178
Query 146 GGCTACACCTGTACAAAAGAAGGTACATGAGGCATGGAGGGTTTACCAATATTATCTGGA 205
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 179 GGCTACGCCTGTACAAAAGAAAGTACATGAGGCATGGAGGGTTTACCAATATTATCTGGA 238
Query 206 CAAGACTACACCTCATTCAACTAACAGGTGGATCGGAACACTCGTCGTCTTTCTTATCTA 265
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 239 CAAGACTACACCTCATTCAACTAACAGGTGGATCGGAACACTTGTTTTCTTTCTTATCTA 298
Query 266 CTGTTTGAGGGTTTACTCTATTCAGGGATTCTACATCATCTCCTATGGTCTTGGAATCTA 325
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 299 CTGTTTGAGGGTTTACTCTATTCACGGATTCTACATCATCTCCTATGGTCTTGGAATCTA 358
Query 326 CCTCCTGAATCTGCTTATCGGGTTCTTGTCCCCTCTTGTTGATCCTGAGCTCGAAGTCA- 384
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || |
Sbjct 359 CCTCCTGAATCTGCTTATCGGGTTTTTGTCTCCTCTTGTTGATCCTGAGCTCGAGGT-AT 417
Query 385 CTGATGGAGCTACTCTCCCTACTCGAGGTTCTGATGAGTTCAAGCCATTTATCCGTCGAC 444
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 418 CTGATGGAGCTACTCTGCCTACTCGAGGTTCTGATGAGTTCAAGCCATTTATCCGCCGTC 477
Query 445 TGCCAGAGTTTAAATTCTGGTACTCCATGACTAAGGCATTCTGCATAGCATTTCTCATGA 504
| || |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 478 TCCCGGAGTTTAAATTCTGGTACTCCATGACTAAGGCATTCTGCATAGCCTTTCTTATGA 537
Query 505 CGTTCTTCTCGGTCTTTGACGTTCCCGTCTTCTGGCCTATATTACTTTGCTACTGGGTTG 564
| ||||||||||| ||||| ||||||||||||||||| ||| | |||||||||||||| |
Sbjct 538 CATTCTTCTCGGTGTTTGATGTTCCCGTCTTCTGGCCCATACTGCTTTGCTACTGGGTCG 597
Query 565 TTCTCTTTGTCCTCACCATGAGACGCCAAATCGCCCACATGATCAAGCACAAGTACATTC 624
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 598 TTCTCTTTGTCCTCACCATGAGACGCCAAATAGCCCACATGATCAAGCACAAGTACATTC 657
Query 625 CTTTCAGCATCGGAAAACAGAAATATAGCGGCCGGAGATCTTCTGCGAGCAGCAGCGGCG 684
|||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||
Sbjct 658 CTTTCAGCATCGGAAAACAGAAATATAGCGGCCGGAAATCTTCTGCGAACAGCGGCGGCG 717
Query 685 GCTCTCGTGCTGATTGATTTCGA-TTGTCAGCCACGTTCTCTGCAGAA 731
||||||||||||||||||||| | ||| ||||||| || |||||||||
Sbjct 718 GCTCTCGTGCTGATTGATTTCAACTTG-CAGCCACATTTTCTGCAGAA 764
> AT4G39220.1 | Symbols: ATRER1A | Rer1 family protein | chr4:18263617-18265771
FORWARD LENGTH=957
Length=957
Score = 577 bits (312), Expect = 6e-164
Identities = 478/557 (86%), Gaps = 15/557 (3%)
Strand=Plus/Plus
Query 114 ATGGATGGAAGTGGTGGTGACAGTGGTTCGA-TGGCTACACCTGTACAAAAGAAG-GTAC 171
||||| | ||| || ||||| |||||||| | |||| |||||||| ||| || | | ||
Sbjct 142 ATGGACGAAAGCGGAGGTGATAGTGGTTC-AGTGGCCACACCTGTTCAACAG-CGAGCAC 199
Query 172 ATGAGGCATGGAGGGTTTACCAATATTATCTGGACAAGACTACACCTCATTCAACTAACA 231
|||||||||||||| |||||||| | ||||| |||||||||||||||||| ||| | |||
Sbjct 200 ATGAGGCATGGAGGATTTACCAACACTATCTTGACAAGACTACACCTCATGCAAATTACA 259
Query 232 GGTGGATCGGAACACTCGTCGTCTTTCTTATCTACTGTTTGAGGGTTTACTCTATTCAGG 291
| ||||| ||||| || |||||| |||||||||||||||||||||||||| ||||||||
Sbjct 260 GATGGATTGGAACTCTTGTCGTCGCTCTTATCTACTGTTTGAGGGTTTACTATATTCAGG 319
Query 292 GATTCTACATCATCTCCTATGGTCTTGGAATCTACCTCCTGAATCTGCTTATCGGGTTCT 351
| |||||||||||| |||||||||||||||||||||| || |||||||||||||||||||
Sbjct 320 GTTTCTACATCATCGCCTATGGTCTTGGAATCTACCTTCTCAATCTGCTTATCGGGTTCT 379
Query 352 TGTCCCCTCTTGTTGATCCTGA-GCTCGAAG--TCACTGATGGAGC-TACTCTCCCTACT 407
|||||||||||||||||||||| ||| | | || ||||||| || | |||| ||||||
Sbjct 380 TGTCCCCTCTTGTTGATCCTGAAGCTGGTGGGGTCTCTGATGG-GCCTTCTCTGCCTACT 438
Query 408 CGAGGTTCTGATGAGTTCAAGCCATTT-ATCCGTCGACTGCCAGAGTTTAAATTCTGGTA 466
|||||||||||||||||||||| ||| || || || || || ||||| |||||||||||
Sbjct 439 AGAGGTTCTGATGAGTTCAAGCC-TTTCATTCGCCGTCTCCCCGAGTTCAAATTCTGGTA 497
Query 467 CTCCATGACTAAGGCATTCTGCATAGCATTTC-TCATGACGTTCTTCTCGGTCTTTGACG 525
||||||||| ||||| ||||||||||| |||| ||||||| ||||||||||| |||||||
Sbjct 498 CTCCATGACAAAGGCTTTCTGCATAGC-TTTCCTCATGACATTCTTCTCGGTGTTTGACG 556
Query 526 TTCCCGTCTTCTGGCCTATAT-TACTTTGCTACTGGGTTGTTCTCTTTGTCCTCACCATG 584
|||| || || ||||| || | | || ||||| ||| | ||||||||||| |||||||||
Sbjct 557 TTCCTGTGTTTTGGCCAAT-TCTGCTGTGCTATTGGATCGTTCTCTTTGTTCTCACCATG 615
Query 585 AGACGCCAAATCGCCCACATGATCAAGCACAAGTACATTCCTTTCAGCATCGGAAAACAG 644
|||||||| |||||||||||||||||| |||| ||||| ||||||||| |||| ||||||
Sbjct 616 AGACGCCAGATCGCCCACATGATCAAGTACAAATACATCCCTTTCAGCTTCGGCAAACAG 675
Query 645 AAATATAGCGGCCGGAG 661
|||||| | || |||||
Sbjct 676 AAATATGGTGGACGGAG 692
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36721161457
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5