BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481030
Length=974
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21620.2 | Symbols: RD2 | Adenine nucleotide alpha hydrolase... 1338 0.0
> AT2G21620.2 | Symbols: RD2 | Adenine nucleotide alpha hydrolases-like
superfamily protein | chr2:9248573-9250256 FORWARD
LENGTH=1028
Length=1028
Score = 1338 bits (724), Expect = 0.0
Identities = 927/1017 (91%), Gaps = 45/1017 (4%)
Strand=Plus/Plus
Query 1 AAATCAAATTCTCTACACGCAACTTTCTTTCAAAT------CC-A--ATCTCGATTCATT 51
||||||||||||||||||||||||||||||||||| || | ||||||||||||
Sbjct 13 AAATCAAATTCTCTACACGCAACTTTCTTTCAAATACAAAACCAATCATCTCGATTCATC 72
Query 52 GAACCCGTGAAGACCCAGAAACCGAAATCGAAGACCCAACGAAACCCATTAA-TCAAAAT 110
|||||| ||||||||||||||| |||||||||||||||| ||||||| || || ||||
Sbjct 73 CAACCCGCGAAGACCCAGAAACCAAAATCGAAGACCCAACAAAACCCA-CAAGTCGAAAT 131
Query 111 CTCGAAATCCGTTGAAAGTTTGTTCC--TTTTTG---G-TCGGAGATGGAGGCTTTACCG 164
||||||||||||||| |||||||||| |||||| | ||||||||||||||||| |||
Sbjct 132 CTCGAAATCCGTTGAGAGTTTGTTCCTTTTTTTGTTTGCTCGGAGATGGAGGCTTTGCCG 191
Query 165 GAGGATGAAGAGTACAGTTTCAGGGAAGTGGTGTTGCCGTCGTTGATTCCGGTAGTACAG 224
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| | |
Sbjct 192 GAGGATGAAGAGTACAGTTTCAGGGAAGTAGTGTTGCCGTCTTTGATTCCGGTAGTGCCG 251
Query 225 GAGCCGGAACTagagagagagagcggagagagaagaagaggaagagaTGTAATCGTAGCC 284
||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 252 GAGCCGGAACTTGAGAGAGAGAGCGGAGAGAGGAGAAGAGGAAGAGATGTTATCGTAGCC 311
Query 285 GTTGATCATGGTCCCAATAGCAAACACGCCTTTGATTGGGCTCTCGTTCACTTCTGTCGT 344
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 312 GTTGATCATGGTCCCAATAGCAAACACGCTTTTGATTGGGCTCTTGTTCATTTCTGTCGT 371
Query 345 CTCGCCGATACTCTCCACCTAGTCCACGCCGTCTCAAGTTCGTTCTCTCTTCAATGTGTT 404
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 372 CTCGCCGATACTCTCCATCTTGTCCACGCCGTCTCAAGTTCGTTCTCTCTTCAATGTGTT 431
Query 405 AAGAACGATGTTGTGTATGAGACGAGCCAAGCTCTCATGGAGAAACTAGCTATTGAGGCG 464
|||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||
Sbjct 432 AAGAACGATGTTGTGTATGAGACGAGCCAAGCCCTCATGGAGAAACTTGCTGTTGAGGCG 491
Query 465 TATCAAGTTGCCATGGTAAAGAGTGTGGCTCGTGTTGTTGAAGGCGATGCTGGTAAAGTA 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 TATCAAGTTGCCATGGTAAAGAGTGTGGCTCGTGTTGTTGAAGGCGATGCTGGTAAAGTA 551
Query 525 ATCTGCAAGGAAGCAGAGAAAGTGAAGCCTGCTGCTGTAATTTTGGGCACACGAGGCAGG 584
|||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||
Sbjct 552 ATCTGCAAGGAAGCAGAGAAAGTGAAGCCTGCTGCTGTGATTGTAGGCACACGAGGCAGG 611
Query 585 AGCTTAGTAAGAAGCGTGCTACAAGGGAGCGTAAGCGAGTATTGTTTCCACAATTGCAAA 644
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 612 AGCTTAGTAAGAAGCGTGCTACAGGGGAGCGTAAGCGAGTATTGTTTCCACAATTGCAAA 671
Query 645 TCCGCTCCCGTCATAATCGTTCCTGGGAAAGAAGCTGGAGACGAGTCGATTGTGGACTGG 704
|| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 672 TCTGCTCCTGTCATAATCGTTCCTGGAAAAGAAGCTGGAGACGAGTCGATCGTGGACTGG 731
Query 705 ACACGTTCAGAAGATCCAAAACCCTGAAGAAAA-GTTCAACTATT-T--CCACGAAGACT 760
||||| ||||||||||| ||||||||||||||| |||||| | || | |||||||||||
Sbjct 732 ACACGCTCAGAAGATCCTAAACCCTGAAGAAAAAGTTCAAGTGTTGTTTCCACGAAGACT 791
Query 761 GTTTTGTTTTTCATCTTTCTTTCGCTATTGTTGCAGTCTTTGTTTCTGTATG-C--T--- 814
|||||||||||||||||||| |||||| |||||||||||||||||||||||| | |
Sbjct 792 GTTTTGTTTTTCATCTTTCTGTCGCTACTGTTGCAGTCTTTGTTTCTGTATGTCCCTAAA 851
Query 815 --TCTT------CTTCGTCT-C-T-T-T--GTGTGTGTATGTGTTTTGATTTGGGTTTT- 859
|||| |||| ||| | | | | |||||||||||||||||||||||||||||
Sbjct 852 AATCTTAGATTGCTTCTTCTTCGTCTCTCTGTGTGTGTATGTGTTTTGATTTGGGTTTTT 911
Query 860 GTAGTTTCAAA-TTTCTGTATAAAACCTTTGCTCAGGAATGAAAT-TATTGTATGCAGTG 917
||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||| ||
Sbjct 912 GTAGTTTCAAAATTTCTGTATAAAACCTTTGCTCAGGAATGAA-TGTATTGTATGCAATG 970
Query 918 GTGTCATGTGTTTCAGACTTTTCACTAAACAAATCTATAGCAGAAACTATTTCTTTT 974
|||| ||||||||||||||||||| ||||||| |||||||||| ||||||||||||
Sbjct 971 GTGTGATGTGTTTCAGACTTTTCAGTAAACAAGCCTATAGCAGACACTATTTCTTTT 1027
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47672205503
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5