BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481031
Length=2311
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21630.1 | Symbols: | Sec23/Sec24 protein transport family ... 3653 0.0
> AT2G21630.1 | Symbols: | Sec23/Sec24 protein transport family
protein | chr2:9250323-9253915 FORWARD LENGTH=2395
Length=2395
Score = 3653 bits (1978), Expect = 0.0
Identities = 2204/2315 (95%), Gaps = 8/2315 (0%)
Strand=Plus/Plus
Query 1 TTACTGGAGAGATAAGTCAACCATGGCGGAGTTTGGAGAGCTCGAAGCTCAAGATGGAGT 60
||||| ||||| | |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2 TTACTAGAGAGGTTAGTCAACCATGGCGGAGTTTGGAGAGCTTGAAGCTCAAGATGGAGT 61
Query 61 TAGAATGCCATGGAACATCATCCCCGTCGCAACGAAGAAA-GAACAATCAATCGACTCCG 119
||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||
Sbjct 62 AAGAATGCCATGGAACATCATCCCCGTCGCAACGAA-AAAGGAACAATCAATCGATTCCG 120
Query 120 AAATTCCAGTTTCCGCCATTTACACACCTCTGAAACCTC-TCGCCGATCATTCTCTTCTC 178
|| |||||||||||||||||||||||||||||||||||| | | ||| || ||||||
Sbjct 121 AAGTTCCAGTTTCCGCCATTTACACACCTCTGAAACCTCTTAG-ATCTCAATCCCTTCTC 179
Query 179 CTTCCTTACTCTCCTCTCCGTTGCCGGACTTGTCGCTCCGTTCTAAACCCTTACTCCGTC 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTTCCTTACTCTCCTCTCCGTTGCCGGACTTGTCGCTCCGTTCTAAACCCTTACTCCGTC 239
Query 239 GTCGATTTCTCCGCCTGTATTTGGGGTTGTCCTTTCTGCTTCAATCGGAATCCTTTCCCG 298
|| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTAGATTTCTCCGCTTGTAATTGGGGTTGTCCTTTCTGCTTCAATCGGAATCCTTTCCCG 299
Query 299 CGT-AATTACTCTTCAATCGCCGATAACAATCTCCCGCCGGAGCTTTTTCCACATTCCAC 357
| | |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 300 C-TAAATTACTCTTCAGTCGCCGATAACAATCTCCCGCCGGAGCTTTTTCCTCATTCCAC 358
Query 358 AACTGTTGAGTATCTTTGTGACTCCTTCTCTTCTCCTTCTCCTCCTGTTTTCCTCTTCGT 417
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 359 AACTGTTGAGTATCTCTGTGATTCCTTCTCTTCTCCTTCTCCTCCTGTTTTCCTCTTCGT 418
Query 418 CGTTGATACTTGCTTGATCTCTGAAGAACTTGATTTCCTCAAATCATCTCTCTTCCAAGC 477
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 419 TGTTGATACTTGTTTGATCTCTGAAGAACTCGATTTCCTCAAATCATCTCTCTTCCAAGC 478
Query 478 T-TTGGATCTTCTTCCTGATACCTCCATCGTCGGTCTCATTACCTTTGATTCATTAGTTC 536
| || |||||||||||||||||||||||| | ||||||||||| |||||||| |||||||
Sbjct 479 TCTT-GATCTTCTTCCTGATACCTCCATCCTTGGTCTCATTACGTTTGATTCGTTAGTTC 537
Query 537 GTGTTTACGAGCTTGGATTCCCACACTGTACCAAATCTTACTTCTTCCATGGAAACAAAG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GTGTTTACGAGCTTGGATTCCCACACTGTACCAAATCTTACTTCTTCCATGGAAACAAAG 597
Query 597 ACTGTACTAAAGATCAGCTCTTGGATCAGCTGAGTTTCTTCGTCAAGAACCCTAAACCTT 656
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 598 ACTGTACTAAAGATCAGCTTTTGGATCAGCTGAGTTTCTTCGTCAAGAATCCTAAACCTT 657
Query 657 CTTCAGGTGTCATTGCTGGTGCTAGAGATGGTCTCTCTTCCGACGACATTGCACGGTTTC 716
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 658 CTTCAGGTGTCATTGCTGGTGCTAGAGATGGTCTCTCTTCCGACGACATTGCTCGGTTTC 717
Query 717 TGTTACCGGCCTCCGATTGCCAGTTTACTCTTCACTCTGTTCTTGAGGAGCTGGGAAACA 776
||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 718 TGTTACCTGCCTCTGATTGCCACTTTACTCTTCACTCTGTTCTTGAGGAGCTGGGAAACA 777
Query 777 ATCCCTGGCCCGTTGCACCTGATCACCGCCCTGCGAGATGCACTGGTGTTGCCCTCCGAA 836
|||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 778 GTCCCTGGCCCGTTGCAGCTGATCACCGTCCTGCGAGATGCACTGGTGTTGCTCTCCGTA 837
Query 837 TCGCTGCTGGTCTCTTAGGAGCTTGCTTTCCTGGCTCTGCTGCTCGAATCATGGCTTTTA 896
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 838 TCGCTGCTAGTCTCTTAGGAGCTTGCTTTCCTGGCTCTGCTGCTAGAATCATGGCTTTTA 897
Query 897 TTGGTGGACCTTCCACTGAAGGCCCTGGAGCTATTGTTTCCCAGGAGCTTTCGGATCCAA 956
||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||| |
Sbjct 898 TTGGTGGACCTTCCACTCAAGGCCCTGGAGCTATTGTTTCTCGGGAGCTTTCGGATCCTA 957
Query 957 TTCGCTCTCATAAGGACATTGATAAAGATTCTGCTACGTATTACCACAATGCTGTCGAGT 1016
|||| ||||||||||| ||||||||||||||||||| |||||||||||| ||||| || |
Sbjct 958 TTCGTTCTCATAAGGATATTGATAAAGATTCTGCTATGTATTACCACAAAGCTGTTGAAT 1017
Query 1017 TCTATGAGATGCTTGCAAAACAACTCGTTCATCAAGGTCATGTTCTTGATGTTTTCGCAA 1076
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || |
Sbjct 1018 TCTATGAGATGCTTGCGAAACAACTTGTTCATCAAGGTCATGTTCTTGATGTTTTTGCTA 1077
Query 1077 GTTCTGTTGATCAGGTAGGCATTGCTGAGCTCAAAGTTGCAGTTGAGCAGACTGGTGGAT 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GTTCTGTTGATCAGGTAGGCATTGCTGAGCTCAAAGTTGCAGTTGAGCAGACTGGTGGAT 1137
Query 1137 TTGTTGTGCTTGCTGAAAGTTTTGGCCACTCAGTATTTAGGGATTCTCTCAAACGCGTGT 1196
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1138 TTGTCGTGCTTGCTGAAAGTTTTGGCCACTCAGTATTTAGAGATTCTCTCAAACGCGTGT 1197
Query 1197 GTCAGTCAGGTGAAAATGATCTAGGCTTGTCCTCATGTGGTATATTTGAAATTAACTGCT 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GTCAGTCAGGTGAAAATGATCTAGGCTTGTCCTCATGTGGTATATTTGAAATTAACTGCT 1257
Query 1257 CAAAGGATATCAAAGTTCAGGGAATTATTGGCCCTTGCGCATCTCTCGAAAAGAAAGGAC 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CAAAGGATATCAAAGTTCAGGGAATTATTGGCCCTTGCGCATCTCTCGAAAAGAAAGGAC 1317
Query 1317 CGTTGTGCTCTGACACTGCCGTCGGTCAGGGACACACAAGCGCATGGAAGATGTGTGGCC 1376
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CGTTGTGCTCTGACACTGCCATCGGTCAGGGACACACAAGCGCATGGAAGATGTGTGGCC 1377
Query 1377 TTGACAAAAACACTTCAATATGTTTGGTTTTTGAAATTGCTAAAAGGGATACAGCTGATG 1436
| ||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1378 TCGACAACAACACTTCCATATGTTTGGTTTTTGAAATTGCTAAAATAGATACAGCTGATG 1437
Query 1437 TTGTTTTGCAGTCGCAGAGCAATCAGTTTTACTTTCAATTTTTAACATACTATCAGCACT 1496
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1438 TTGTTTTGCAGTCGCAGAGCAATCAGTTTTACTTTCAATTTTTGACATACTATCAGCACT 1497
Query 1497 CAAATGGTCAAACAAGACTCCGGGTAACAACTCTTTCAAGAAGATGGGTAATGGGAACTG 1556
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1498 CAAATGGTCAAACAAGACTCCGGGTAACAACTCTTTCTAGAAGATGGGTAATGGGAACTG 1557
Query 1557 AAAGCTTACAGGAGTTGAGCAATGGTTTTGACCAAGAAGCAGCTGCTGTAGTAATGGCAC 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 AAAGCTTACAGGAGTTGAGCAATGGTTTTGACCAAGAAGCAGCTGCTGTAGTAATGGCAC 1617
Query 1617 GGCTTATTTCTTTCAAAATGGAGACTCAGCCTGAGTTTAATCCCCAAAGGTGGGTCGATA 1676
| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 GACTTATTTCCTCCAAAATGGAGACTCAGCCTGAGTTTAATCCCCAAAGGTGGGTCGATA 1677
Query 1677 AAGCTTTGATAAATATATGCACCTGGTTTGGAGATTACCAGAAAGGCAATCCTTCTTCCT 1736
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 AAGCGTTGATAAATCTATGCACCTGGTTTGGAGATTACCAGAAAGGCAATCCTTCTTCCT 1737
Query 1737 TTAGCTTGTCTTCTCAGTTATCAATTTTCCCGCAGTTTGTGTTTCACTTGCGCCGATCTC 1796
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 TTAGCTTATCTTCTCAGTTATCAATTTTCCCGCAGTTTGTGTTTCACTTGCGCCGATCTC 1797
Query 1797 AGTTTGTCCAGGTCTTTAACAACAGCCCAGACGAGACAGTATATTTTCGAATGATATTGT 1856
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1798 AGTTTGTCCAGGTCTTTAACAACAGCCCAGACGAGACAGCATATTTTCGAATGATATTGT 1857
Query 1857 ACAGAGAGAACGTTTCGAATTCAATCGTGATGATTCAACCTTCACTGATTTCTTTCTCAT 1916
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1858 ACAGAGAGAACGTTTCTAATTCAGTCGTGATGATTCAACCTTCACTGATTTCTTTCTCAT 1917
Query 1917 TCCATTCACCGCCAGAACCAATTCTTCTTGATGTAGCATCCATTGCAGCTGACAGAATCC 1976
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 TCCATTCACCGCCAGAGCCAATTCTTCTTGATGTAGCATCCATTGCAGCTGACAGAATCT 1977
Query 1977 TACTGTTGGATTCATACTTCACTCTTGTAATATTTCATGGTTCTACCATCGCCCAATGGC 2036
|||||||||||||||||||||| |||||||||||||| || ||||| ||||| |||||||
Sbjct 1978 TACTGTTGGATTCATACTTCACCCTTGTAATATTTCACGGCTCTACAATCGCTCAATGGC 2037
Query 2037 AAAAAGCTGGATACCATAATCAACCTGAACACCAGGTATTTGAGCATCTGTTGCAATCAC 2096
||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||
Sbjct 2038 GAAAAGCTGGATACCATAATCAACCTGAACACCAGGCATTTGGGCATCTGTTGCAGTCAC 2097
Query 2097 CTCGTAACTACTCAGACACAATCATCAATGAACGGTTTCCCACTCCGCGTCTTGTCATAT 2156
||||| ||||| ||||||||||||| | |||| |||||||||||||||||||||| ||||
Sbjct 2098 CTCGTGACTACGCAGACACAATCATGAGTGAAAGGTTTCCCACTCCGCGTCTTGTTATAT 2157
Query 2157 GTGATCAGTATGGTTCACAGGCGCGTTTTCTTCTAGCAAAACTGAATCCTTCTGATGGCG 2216
| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
Sbjct 2158 GCGATCAGTATGGTTCACAGGCTCGTTTTCTTCTAGCAAAACTGAATCCTTGTGATGGAG 2217
Query 2217 AAGCTCCTCTTTCCGGGGAGAGTAATGTTTTCACAGATGATGTTAGCTTGTCTGTGTTTC 2276
| |||| | ||||||| | |||||||||||||| |||||||||||||||||||| ||||
Sbjct 2218 ATGCTCATTTTTCCGGCCAAAGTAATGTTTTCACGGATGATGTTAGCTTGTCTGTATTTC 2277
Query 2277 TTGATCATCTTAGACGACTCATTGTTCACTGATAT 2311
|||||||||||||||||||||||||||| ||||||
Sbjct 2278 TTGATCATCTTAGACGACTCATTGTTCATTGATAT 2312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114708245325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5