BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481032

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21650.1 | Symbols: MEE3, ATRL2, RSM1 | Homeodomain-like sup...   841    0.0  


> AT2G21650.1 | Symbols: MEE3, ATRL2, RSM1 | Homeodomain-like superfamily 
protein | chr2:9259583-9260656 FORWARD LENGTH=614
Length=614

 Score =  841 bits (455),  Expect = 0.0
 Identities = 550/591 (93%), Gaps = 25/591 (4%)
 Strand=Plus/Plus

Query  24   ACACAAAACC-AA-A-CATCAACTTTAGTTACTAAACAATGGCATCAGGCTCAATGTCTT  80
            |||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  34   ACACAAAACCAAACATCATCAACTTTAGTTACTAAACAATGGCATCAGGCTCAATGTCTT  93

Query  81   CTTATGGCTCTGGCTCATGGACTGTTAAGCAGAACAAAGCCTTTGAGCGTGCTCTAGCAG  140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  94   CTTATGGCTCTGGCTCATGGACTGTTAAGCAGAACAAAGCCTTTGAGCGTGCTCTAGCAG  153

Query  141  TCTATGACCAAGACACTCCTGACCGTTGGCACAATATTGCTAGATCTGTTGGTGGTAAAA  200
            ||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||
Sbjct  154  TCTATGACCAAGACACTCCGGACCGTTGGCACAATGTTGCTAGAGCTGTTGGTGGTAAAA  213

Query  201  CACCAGAAGAAGCTAAGAGACAATATGACCTTCTCGTGCGTGACATCGAAAGCATCGAGA  260
            |||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct  214  CACCAGAAGAAGCTAAGAGACAGTATGACCTTCTAGTTCGTGACATCGAAAGCATCGAGA  273

Query  261  ATGGTCACGTGCCGTTCCCTGACTACAAGACTACTACTGGAAACAGCAACAGAGGCAGGC  320
            ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  274  ATGGTCACGTGCCATTCCCTGACTACAAGACTACTACAGGAAACAGCAACAGAGGCAGGC  333

Query  321  TGCGTGATGAGGAAAAGAGGATGAGAAGCATGAAGCTGCAGTGAAACAAGAAGCAACaaa  380
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  334  TGCGTGATGAGGAAAAGAGGATGAGAAGCATGAAGCTGCAGTGAGACAAGAAGCAACAAA  393

Query  381  aaaaaaaaaaaCTAACTACGTATGATCGTCAAGAAAATAAAAGAGAATCACTTCAGAGAG  440
            |          ||||||||||||||||||||| ||  |||||||||||||||||||||||
Sbjct  394  AC---------CTAACTACGTATGATCGTCAA-AA--TAAAAGAGAATCACTTCAGAGAG  441

Query  441  ATGTGtttttttCGATGTCTGACGAATCAATGttttttttCTTGCAATTTCTCATGTTTT  500
            ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  442  ATGTGTTTTTTTCAATGTCTGACGAATCAATGTTTTTTT-CTTGCAATTTCTCATGTTTT  500

Query  501  -CCCTAAGAATTGGtttttttttttGAGGCaa-aaaaaaG------CACTCGAATTAGTT  552
             ||||||||| ||||||||||||  ||||||| ||||||       |||||||||| |||
Sbjct  501  TCCCTAAGAAATGGTTTTTTTTTC-GAGGCAACAAAAAAAAAATAACACTCGAATTTGTT  559

Query  553  AACCAAAATCTGTATTTAGGGTTCTTCGTAATGAAAAATCCATTGTCTAAA  603
            |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  560  AACCAAAATCTGTATTTAGGGTTCTTCGTAATGAAAAATCCAATGTCTAAA  610



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29035336966


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5