BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481034
Length=671
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circ... 490 7e-138
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circ... 265 5e-70
AT1G21580.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 139 3e-32
> AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circadian
rhythm, and rna binding 2 | chr2:9265249-9266393 REVERSE
LENGTH=836
Length=836
Score = 490 bits (265), Expect = 7e-138
Identities = 301/319 (94%), Gaps = 0/319 (0%)
Strand=Plus/Plus
Query 1 TAGATCTTCTTCTCAAATTTCAATGGCGTCTGCAGATGTTGAGTACCGGTGCTTCGTTGG 60
||||||||||| |||||||||||||||||| | ||||||||||| ||||||||||||||
Sbjct 56 TAGATCTTCTTTTCAAATTTCAATGGCGTCCGGTGATGTTGAGTATCGGTGCTTCGTTGG 115
Query 61 AGGTCTAGCTTGGGCCACTGATGACAGAGCTCTTGAAACTGCCTTCTCTCAATACGGCGA 120
||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 116 AGGTCTAGCATGGGCCACTGATGACAGAGCTCTTGAGACTGCCTTCGCTCAATACGGCGA 175
Query 121 CGTTGTTGATTCCAAGATCATTAACGATCGTGAGACTGGAAGATCAAGGGGATTCGGATT 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 CGTTATTGATTCCAAGATCATTAACGATCGTGAGACTGGAAGATCAAGGGGATTCGGATT 235
Query 181 CGTCACCTTCAAGGATGAGAAATCCATGAAGGATGCGATTGAAGGAATGAACGGACAAGA 240
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 236 CGTCACCTTCAAGGATGAGAAAGCCATGAAGGATGCGATTGAGGGAATGAACGGACAAGA 295
Query 241 GCTCGATGGACGTAGCATCACTGTTAACGAGGCTCAGTCACGAGGAAgcggcggcggagg 300
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 296 TCTCGATGGCCGTAGCATCACTGTTAACGAGGCTCAGTCACGAGGAAGCGGTGGCGGCGG 355
Query 301 cggcggccgtggaggtggt 319
||| |||||||||||||
Sbjct 356 AGGCCACCGTGGAGGTGGT 374
Score = 388 bits (210), Expect = 3e-107
Identities = 339/394 (86%), Gaps = 37/394 (9%)
Strand=Plus/Plus
Query 309 gtggaggtggtagctacggaggtggcggcggcggtAGACGTGAGGGAGGAGGTGGATACA 368
||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||
Sbjct 415 GTGGAGGTGGTAGCTACGGAGGT---GGCGGCGGTAGACGCGAGGGTGGAGGAGGATACA 471
Query 369 ---GCGGTGGTGGAGGTTACTCGTCAAGAGGAGGTGGTGGTGGCGGAAGCTACGGTGGTG 425
|||| || || |||||||| || | | ||||||||||||||||||||||||||||||
Sbjct 472 GCGGCGGCGGCGGCGGTTACTCCTC-A-A-GAGGTGGTGGTGGCGGAAGCTACGGTGGTG 528
Query 426 GAAGACGTGAAGGTGGAGGAGGATACGGCGGTAGTGAAGGAGGGGGTTACGGAGGAAGCG 485
|||||||||| || |||||||||||||| ||| |||||||||| ||||||||||||||||
Sbjct 529 GAAGACGTGAGGGAGGAGGAGGATACGGTGGTGGTGAAGGAGGAGGTTACGGAGGAAGCG 588
Query 486 GTGGAGG---AGGATGGTAATTCCTTTAATTAGATTTGGGATTATCAATGAATGTTCTCT 542
|||| || ||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 589 GTGGTGGTGGAGGATGGTAATTCCTTTAATTAGGTTTGGGATTACCAATGAATGTTCTCT 648
Query 543 CTCTCTAT-GT---G-TTCT-CT-G-TTT-G-GT-TT---------G----G-TTCTGCT 577
||||| | || | |||| || | ||| | || || | | |||||||
Sbjct 649 CTCTCGCTTGTTATGCTTCTACTTGGTTTTGTGTGTTCTCTATTTTGTTCTGGTTCTGCT 708
Query 578 TTAGATTTGATGTAACAGTTCGTGATTAGGTATTTTGGTATCTGGAAACGTAATGTTAAG 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 TTAGATTTGATGTAACAGTTCGTGATTAGGTATTTTGGTATCTGGAAACGTAATGTTAAG 768
Query 638 TCACTTGTCATTCTCTAAATAACAATTTTCTTCG 671
||||||||||||||||||||||||| ||||||||
Sbjct 769 TCACTTGTCATTCTCTAAATAACAAATTTCTTCG 802
> AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circadian
rhythm, and RNA binding 1 | chr4:18273899-18275079 REVERSE
LENGTH=898
Length=898
Score = 265 bits (143), Expect = 5e-70
Identities = 239/283 (84%), Gaps = 16/283 (6%)
Strand=Plus/Plus
Query 38 GTTGAGTACCGGTGCTTCGTTGGAGGTCTAGCTTGGGCCA-C--TGATGACAGAGCTCTT 94
||||||||||||||||| || || || || || ||||||| | |||||| ||| ||||
Sbjct 131 GTTGAGTACCGGTGCTTTGTCGGCGGCCTTGCCTGGGCCACCAATGATGA-AGA--TCTT 187
Query 95 GAAACTG-CCTTCTCTCAATACGGCGACGTTGTTGATTCCAAGATCATTAACGATCGTGA 153
||| | | ||||| || | |||||||||| | ||||| |||||||||||||| || ||
Sbjct 188 CAAA-GGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGATCATTAACGACCGCGA 246
Query 154 GACTGGAAGATCAAGGGGATTCGGATTCGTCACCTTCAAGGATGAGAAATCCATGAAGGA 213
|| ||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||
Sbjct 247 GAGTGGAAGATCAAGGGGATTCGGATTCGTCACCTTCAAGGACGAGAAAGCCATGAGGGA 306
Query 214 TGCGATTGAAG-GAATGAACGG-ACAAGAGCTCGATGGACGTAG-CATCACTGTTAACGA 270
||||||||||| || ||||||| | ||||||||||||||||| | |||||| || |||||
Sbjct 307 TGCGATTGAAGAGA-TGAACGGTA-AAGAGCTCGATGGACGT-GTCATCACCGTGAACGA 363
Query 271 GGCTCAGTC-ACGAGGAAgcggcggcggaggcggcggccgtgg 312
||||||||| | |||| |||||||| || || || ||||||||
Sbjct 364 GGCTCAGTCGA-GAGGTAGCGGCGGTGGCGGAGGAGGCCGTGG 405
> AT1G21580.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr1:7557262-7565803 REVERSE LENGTH=7209
Length=7209
Score = 139 bits (75), Expect = 3e-32
Identities = 114/132 (86%), Gaps = 6/132 (5%)
Strand=Plus/Plus
Query 160 AAGATCAAGGGGATTCGGATTCGTCACCTTCAAGGATGAGAAATCCATGAAGGATGCGAT 219
||| |||||||||||| |||||||||| |||||||||||||||||||||||||||| |||
Sbjct 6683 AAGCTCAAGGGGATTCAGATTCGTCACATTCAAGGATGAGAAATCCATGAAGGATGTGAT 6742
Query 220 TGAAGGAATGAAC-GGACAAGAGCTCGATGGACGTAGCATCACTGT--TAACGAGGCTCA 276
|| ||| || | ||||||||||||||||| || ||||||||||| ||| | | ||||
Sbjct 6743 CGAGGGATTGG-CTGGACAAGAGCTCGATGGTCGCAGCATCACTGTGATAATG-G-CTCA 6799
Query 277 GTCACGAGGAAg 288
|| |||||||||
Sbjct 6800 GTTACGAGGAAG 6811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32451258962
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5