BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481035
Length=330
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 220 5e-57
> AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9270114-9270597 REVERSE LENGTH=354
Length=354
Score = 220 bits (119), Expect = 5e-57
Identities = 224/271 (83%), Gaps = 21/271 (8%)
Strand=Plus/Plus
Query 1 ATGGCTTCAAATGTTGAATTCACTTGCTTTGTTCGTGGTCTTGATCAGAACACTGATGGA 60
|||||| |||||||||||| |||||||||||||||||||||||||||| |||| |||| |
Sbjct 1 ATGGCTACAAATGTTGAATACACTTGCTTTGTTCGTGGTCTTGATCAGGACACCGATGAA 60
Query 61 AACGATCTTAAGAACATATTTTCAAAGTTTGGCAAC---ATC-ATT-TACGATCAT---- 111
|| ||||||| | | ||||||||||||||||||||| ||| ||| || |||||
Sbjct 61 AAAGATCTTACGGATATATTTTCAAAGTTTGGCAACGTGATCGATTCTAAAATCATTTAC 120
Query 112 G-T-G--AC--TGGAAAATCAAGAAGATTTGGATTTGTTACTTTCGAGGAGGAGAAATCC 165
| | | || |||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 121 GATCGTGACACTGGAAAGTCAAGAAGATTCGGATTTGTTACTTTCGAGGAGGAAAAATCT 180
Query 166 ATGAGAGATGCCATTAAGGAA-ATGAATGATT-ATA-AGTCTCGCAGCAAATGTGTCAAT 222
|||| ||||||||||| | | ||| | | | | | ||||||| || |||||||| |||
Sbjct 181 ATGACAGATGCCATTATG-ATTATGGACG-TGGA-AGAGTCTCGAAGTAAATGTGTTAAT 237
Query 223 GTTGGATCCATCATTGTGGAAGTGGCTAGGC 253
||||||||||||| ||||||||| |||||||
Sbjct 238 GTTGGATCCATCACTGTGGAAGTAGCTAGGC 268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15381931194
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5