BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481035 Length=330 Score E Sequences producing significant alignments: (Bits) Value AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 220 5e-57 > AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:9270114-9270597 REVERSE LENGTH=354 Length=354 Score = 220 bits (119), Expect = 5e-57 Identities = 224/271 (83%), Gaps = 21/271 (8%) Strand=Plus/Plus Query 1 ATGGCTTCAAATGTTGAATTCACTTGCTTTGTTCGTGGTCTTGATCAGAACACTGATGGA 60 |||||| |||||||||||| |||||||||||||||||||||||||||| |||| |||| | Sbjct 1 ATGGCTACAAATGTTGAATACACTTGCTTTGTTCGTGGTCTTGATCAGGACACCGATGAA 60 Query 61 AACGATCTTAAGAACATATTTTCAAAGTTTGGCAAC---ATC-ATT-TACGATCAT---- 111 || ||||||| | | ||||||||||||||||||||| ||| ||| || ||||| Sbjct 61 AAAGATCTTACGGATATATTTTCAAAGTTTGGCAACGTGATCGATTCTAAAATCATTTAC 120 Query 112 G-T-G--AC--TGGAAAATCAAGAAGATTTGGATTTGTTACTTTCGAGGAGGAGAAATCC 165 | | | || |||||| ||||||||||| ||||||||||||||||||||||| ||||| Sbjct 121 GATCGTGACACTGGAAAGTCAAGAAGATTCGGATTTGTTACTTTCGAGGAGGAAAAATCT 180 Query 166 ATGAGAGATGCCATTAAGGAA-ATGAATGATT-ATA-AGTCTCGCAGCAAATGTGTCAAT 222 |||| ||||||||||| | | ||| | | | | | ||||||| || |||||||| ||| Sbjct 181 ATGACAGATGCCATTATG-ATTATGGACG-TGGA-AGAGTCTCGAAGTAAATGTGTTAAT 237 Query 223 GTTGGATCCATCATTGTGGAAGTGGCTAGGC 253 ||||||||||||| ||||||||| ||||||| Sbjct 238 GTTGGATCCATCACTGTGGAAGTAGCTAGGC 268 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15381931194 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5