BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481036 Length=1978 Score E Sequences producing significant alignments: (Bits) Value AT2G21710.1 | Symbols: EMB2219 | Mitochondrial transcription te... 2907 0.0 > AT2G21710.1 | Symbols: EMB2219 | Mitochondrial transcription termination factor family protein | chr2:9270886-9273418 FORWARD LENGTH=2037 Length=2037 Score = 2907 bits (1574), Expect = 0.0 Identities = 1870/2008 (93%), Gaps = 39/2008 (2%) Strand=Plus/Plus Query 1 ATGCTTCGCCACTGCAACGTCA-C--CTACACCTCATCGTTTTCCCTCATCTCCTCCTCT 57 ||||||| |||||||||||| | | |||||||||| |||||||| |||||||||| ||| Sbjct 1 ATGCTTCTCCACTGCAACGTTAGCTACTACACCTCAACGTTTTCCTTCATCTCCTCATCT 60 Query 58 CTCCGCCGCCAAGACAACGCCGACGATTCACAAGATACAGTAATCCGTCGCCGGCACAAT 117 |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 61 CTCCGCCGTCAAGACAACGCCGACGATTCACAAGATACAGTAATCCGTCGCCGCCACAAT 120 Query 118 GCTAGATCCCTTTCTCTATACATCCGCCATAACCGAGACCTAAAGCTTAACAAAAACCCT 177 ||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 121 GCTAGATCCATTTCTCTATACATCCGCCATAATCGAGACCTAAAGCTCAACAAAAACCCT 180 Query 178 AACGAATCTCAAGAATCC----TTCGT--TCCTCCTCCTCCGCGGCGAGATATT-GACGG 230 ||||||||||||||| || ||| | |||||||||||||||||||||| || ||||| Sbjct 181 AACGAATCTCAAGAAACCTTTGTTCCTCCTCCTCCTCCTCCGCGGCGAGAT-TTAGACGG 239 Query 231 TGATGACCGATCGAAGCTACTTGAGCTCTCTCTTGTAACTAGAAGAACTCCACAATTTCC 290 ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TGAAAACCGATCCAAGCTACTTGAGCTCTCTCTTGTAACTAGAAGAACTCCACAATTTCC 299 Query 291 TGGTTCAATCTACGCTCAATCTGCTTCTGATGCTGATGTTGCTTCTTCTCTTCCTTCGCT 350 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 300 TGGTTCAATCTACGCTCAATCTGCTTCTGATGCTGATATTGCTTCTTCTCTTCCTTCGCT 359 Query 351 TCGTAAATTTCTTGGGTCTGATGGTGATGACGACGgagagagcgagagagagaTGATAGT 410 |||||| ||||| || |||||||||||||| || |||||||| ||||| ||||||||||| Sbjct 360 TCGTAATTTTCTCGGCTCTGATGGTGATGATGATGGAGAGAGTGAGAGGGAGATGATAGT 419 Query 411 TAAAGCGCTTGAGATTAGGAGGAAAGTGACGAAAGAGATTATCAAAGAGTCTTTGGTGAG 470 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 420 TAAAGCGCTTGAGATTAGAAGGAAAGTGACGAAAGAGATTATCAAAGAGTCTTTGGTTAG 479 Query 471 GAAAGGTAGATTTGGGATTACGTATGCGACTAATGTGACTGATCGTTTGGGTGATTTCGT 530 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 480 GAAAGGTAGATTTGGGATTACGTATGCGACTAATGTCACTGATCGTTTGGGTGATTTCGT 539 Query 531 TGATCATGTTATGATTCAAGCTGCGGCGTTGAAGCTGTTGCCGGAATTTTCAGAGTCGAG 590 ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| || Sbjct 540 TGATCATGTTATGATTCAAGCTGCGGCGTTGAAACGGTTGCCGGAATTTTCAGAGTCTAG 599 Query 591 GTTCAATCTTCGTGCCAGGACTGTTATAGAAGACTCCAATTTCGTGCCTCTTGTAAGGTG 650 ||||||||||| || ||||| ||||| ||||||||||||||||| |||||||||||||| Sbjct 600 ATTCAATCTTCGCGCTAGGACGGTTATTGAAGACTCCAATTTCGTTCCTCTTGTAAGGTG 659 Query 651 GTTGAAGCACCATGAGTTTTCATATAATAGAATTGCGAAGATCATATGCATGTCAAAAGG 710 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 660 GTTGAAGCACCATGAGTTGTCATATAATAGAATAGCGAAGATCATATGCATGTCAAAAGG 719 Query 711 AAATCTTGACTCCATAAGGATCATGATCGAGTGGCTGAAGACCATTCATGTGAAGGGTGA 770 |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 720 AAATCTCGACTCCATAAGGATCATGATCGAGTGGCTGAAGAGCATTCATGTGAAGGGTGA 779 Query 771 ATTCATTGGAGTTGCGTTCTTGAGATCTGGGGACAACATCTTGCAACGTAGTCGTGAAGA 830 |||||||| |||||||||||||||||||||||| || || |||||||||| ||||| || Sbjct 780 ATTCATTGCAGTTGCGTTCTTGAGATCTGGGGATAATATATTGCAACGTAACCGTGAGGA 839 Query 831 ACTGGACGAGATTGTTGAGTATCTTGAGAGCAATGGTGTGAGGAGGGATTGGATGGGATA 890 ||| |||| |||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 840 ACTAAACGAAATTGTTGAGTATCTAGAGAGCAATGGTGTGAGGAGGGATTGGATGGGTTA 899 Query 891 TGTTGTTGGGCGATGTCCGGAGTTGTTGTCTTTTAGCATGGAAGAAGTGAAAAGCCGTGT 950 ||| ||||| ||||||| |||||| ||||||| |||||||||||||||||||||||||| Sbjct 900 TGTGGTTGGAAGATGTCCTGAGTTGCTGTCTTTCAGCATGGAAGAAGTGAAAAGCCGTGT 959 Query 951 TGATTTCTTCTTGAAAATGGGTATGAATCAGAATGACTTTGGCACGATGGTTTATGATTA 1010 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 960 TGATTTCTTCTTGAAAATGGGTATGAATCAGAATGACTTTGGCACTATGGTCTATGATTA 1019 Query 1011 TCCAAAGATACTTGGGTACTTCTCATTCGAAGAGATGGAGAAAAAGATCAATTACCTGAA 1070 |||||||||| |||| | |||||||||| ||| ||||||||||||||||||||||||||| Sbjct 1020 TCCAAAGATAATTGGCTTCTTCTCATTCCAAGTGATGGAGAAAAAGATCAATTACCTGAA 1079 Query 1071 AGAATTTGGCCTTAGCACAGAAGAAGTTGGGAGACTATTAGCCTTCAAGCCACACCTCAT 1130 ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| || Sbjct 1080 AGAGTTTGGCCTTAGCACAGAAGAAGTTGGGAGACTATTAGCCTACAAGCCACACCTAAT 1139 Query 1131 GGGATGCAGTATTGAAGAAAGGTGGAAGCCTCTAGTCAAATATTTCTACTACCTTGGAAT 1190 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1140 GGGATGCAGTATTGAAGAAAGATGGAAGCCTCTAGTCAAATATTTCTACTACCTTGGAAT 1199 Query 1191 CCCCAAAGAAGGAATGAAAAGAATCCTTGTCGTGAAACCAATTCTTTACTGCATTGATTT 1250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 CCCCAAAGAAGGAATGAAAAGAATCCTTGTCGTGAAACCAATTCTTTACTGCATTGATTT 1259 Query 1251 GGAGAAGACAATCGCCCCAAAGGTAAGATTTTTGCAAGAGATGGGTATCCCTAATGAGGC 1310 ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 1260 GGAGAAGACGATCGCCCCAAAGGTAAGATTTTTGCAGGAGATGGGTATCCCTAATGAAGC 1319 Query 1311 CATTGGAAACATGTTAGTAAAGTTTCCTTCCTTACTCACAAACAGCCTCTACAAGAAAAT 1370 |||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| Sbjct 1320 CATTGGAAACATGTTAGTAAAGTTTCCTTCTTTACTTACAAATAGCCTCTACAAGAAAAT 1379 Query 1371 CCGACCTGTGGTGATTTTTCTCTTAACCAGAGCCGGAGTAACCCAAAAGGATATCGGTAA 1430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1380 CCGACCTGTGGTGATTTTTCTCTTAACCAGAGCCGGAGTAACCCAAAAGGATATCGGTAA 1439 Query 1431 AGTTATCGCAATGGATCCAGCTCTCCTTGGATGCAGCATAGGGACAAAGCTAGAACCCAA 1490 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1440 AGTTATAGCAATGGATCCAGCTCTCCTTGGATGCAGCATAGGGACGAAGCTAGAACCCAA 1499 Query 1491 CATGAGATACTATATATCATTGGGTATTCGATTTCATCAACTAGGCGAAATGATTGCTGA 1550 |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 1500 CATGAGATACTATATATCATTGGGAATTCGATTTTATCAACTAGGCGAAATGATTGCTGA 1559 Query 1551 TTTCCCGATGCTGCTTCGTTATAACGTTGATAATCTGCGTCCAAAATACCGTTACTTGCG 1610 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 1560 TTTCCCGATGCTGCTTCGGTATAACGTTGATAATCTGCGCCCAAAATACCGTTACTTGCG 1619 Query 1611 AAGAACAATGATCCGTCCGCTTCAAGATCTCATTGAGTTTCCCAGATTCTTTAGCTACTC 1670 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 1620 AAGAACAATGATCCGTCCGCTTCAAGATCTCATAGAGTTTCCCAGATTTTTTAGCTACTC 1679 Query 1671 ACTGGAGCGTCGGATAATCCCAAGGCACACCATTATGGTTGAGAACAGAGTTAACTTCAA 1730 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1680 ACTAGAGCGTCGGATAATCCCAAGGCACACCATTATGGTTGAGAACAGAGTTAACTTCAA 1739 Query 1731 GCTCAGATACATGTTGGCTTGTACGGATGAagagtttgagaggagagttagagataaagt 1790 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1740 GCTCAGATACATGTTGGCTTGTACGGATGAAGAGTTTGAGAGGAGAGTGAGAGATAAAGT 1799 Query 1791 ggagagaagagagagaTTCGAAGCTGGTCTTGACTCCGAGGATTC------G--GAATGA 1842 ||||||||||||||||||||||||||| || ||||| |||||||| | | |||| Sbjct 1800 GGAGAGAAGAGAGAGATTCGAAGCTGGCCTCGACTCTGAGGATTCTCAACCGTCGGATGA 1859 Query 1843 GAACATCATC-GATAAGGAGATTGATTTCTCAGACTCTCCGGAAGAAGAATGAAGAGGAT 1901 ||||||| || ||| ||||||||| |||||||||| ||||||||||| || | | || Sbjct 1860 GAACATC-TCCGATCAGGAGATTGCTTTCTCAGACGAAGCGGAAGAAGAA-GA-G-G-AT 1914 Query 1902 TT-AGCATAATGAATAG--TTCT-G--TAC--A-TAGT-CTTGTACAGTT-AACACAATT 1950 || | || |||||| || || | | || | |||| || |||||||| ||||||||| Sbjct 1915 TTGA-CAGAATGAAGAGGATT-TAGCATAATGAATAGTTCT-GTACAGTTTAACACAATT 1971 Query 1951 ATAAACGAACGAATGTGTCAATTAGTCT 1978 |||||||||||||||||| ||| ||||| Sbjct 1972 ATAAACGAACGAATGTGTGAATGAGTCT 1999 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 97991463840 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5