BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481036
Length=1978
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21710.1 | Symbols: EMB2219 | Mitochondrial transcription te... 2907 0.0
> AT2G21710.1 | Symbols: EMB2219 | Mitochondrial transcription
termination factor family protein | chr2:9270886-9273418 FORWARD
LENGTH=2037
Length=2037
Score = 2907 bits (1574), Expect = 0.0
Identities = 1870/2008 (93%), Gaps = 39/2008 (2%)
Strand=Plus/Plus
Query 1 ATGCTTCGCCACTGCAACGTCA-C--CTACACCTCATCGTTTTCCCTCATCTCCTCCTCT 57
||||||| |||||||||||| | | |||||||||| |||||||| |||||||||| |||
Sbjct 1 ATGCTTCTCCACTGCAACGTTAGCTACTACACCTCAACGTTTTCCTTCATCTCCTCATCT 60
Query 58 CTCCGCCGCCAAGACAACGCCGACGATTCACAAGATACAGTAATCCGTCGCCGGCACAAT 117
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CTCCGCCGTCAAGACAACGCCGACGATTCACAAGATACAGTAATCCGTCGCCGCCACAAT 120
Query 118 GCTAGATCCCTTTCTCTATACATCCGCCATAACCGAGACCTAAAGCTTAACAAAAACCCT 177
||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 121 GCTAGATCCATTTCTCTATACATCCGCCATAATCGAGACCTAAAGCTCAACAAAAACCCT 180
Query 178 AACGAATCTCAAGAATCC----TTCGT--TCCTCCTCCTCCGCGGCGAGATATT-GACGG 230
||||||||||||||| || ||| | |||||||||||||||||||||| || |||||
Sbjct 181 AACGAATCTCAAGAAACCTTTGTTCCTCCTCCTCCTCCTCCGCGGCGAGAT-TTAGACGG 239
Query 231 TGATGACCGATCGAAGCTACTTGAGCTCTCTCTTGTAACTAGAAGAACTCCACAATTTCC 290
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGAAAACCGATCCAAGCTACTTGAGCTCTCTCTTGTAACTAGAAGAACTCCACAATTTCC 299
Query 291 TGGTTCAATCTACGCTCAATCTGCTTCTGATGCTGATGTTGCTTCTTCTCTTCCTTCGCT 350
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 300 TGGTTCAATCTACGCTCAATCTGCTTCTGATGCTGATATTGCTTCTTCTCTTCCTTCGCT 359
Query 351 TCGTAAATTTCTTGGGTCTGATGGTGATGACGACGgagagagcgagagagagaTGATAGT 410
|||||| ||||| || |||||||||||||| || |||||||| ||||| |||||||||||
Sbjct 360 TCGTAATTTTCTCGGCTCTGATGGTGATGATGATGGAGAGAGTGAGAGGGAGATGATAGT 419
Query 411 TAAAGCGCTTGAGATTAGGAGGAAAGTGACGAAAGAGATTATCAAAGAGTCTTTGGTGAG 470
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 TAAAGCGCTTGAGATTAGAAGGAAAGTGACGAAAGAGATTATCAAAGAGTCTTTGGTTAG 479
Query 471 GAAAGGTAGATTTGGGATTACGTATGCGACTAATGTGACTGATCGTTTGGGTGATTTCGT 530
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 GAAAGGTAGATTTGGGATTACGTATGCGACTAATGTCACTGATCGTTTGGGTGATTTCGT 539
Query 531 TGATCATGTTATGATTCAAGCTGCGGCGTTGAAGCTGTTGCCGGAATTTTCAGAGTCGAG 590
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct 540 TGATCATGTTATGATTCAAGCTGCGGCGTTGAAACGGTTGCCGGAATTTTCAGAGTCTAG 599
Query 591 GTTCAATCTTCGTGCCAGGACTGTTATAGAAGACTCCAATTTCGTGCCTCTTGTAAGGTG 650
||||||||||| || ||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 600 ATTCAATCTTCGCGCTAGGACGGTTATTGAAGACTCCAATTTCGTTCCTCTTGTAAGGTG 659
Query 651 GTTGAAGCACCATGAGTTTTCATATAATAGAATTGCGAAGATCATATGCATGTCAAAAGG 710
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 GTTGAAGCACCATGAGTTGTCATATAATAGAATAGCGAAGATCATATGCATGTCAAAAGG 719
Query 711 AAATCTTGACTCCATAAGGATCATGATCGAGTGGCTGAAGACCATTCATGTGAAGGGTGA 770
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 720 AAATCTCGACTCCATAAGGATCATGATCGAGTGGCTGAAGAGCATTCATGTGAAGGGTGA 779
Query 771 ATTCATTGGAGTTGCGTTCTTGAGATCTGGGGACAACATCTTGCAACGTAGTCGTGAAGA 830
|||||||| |||||||||||||||||||||||| || || |||||||||| ||||| ||
Sbjct 780 ATTCATTGCAGTTGCGTTCTTGAGATCTGGGGATAATATATTGCAACGTAACCGTGAGGA 839
Query 831 ACTGGACGAGATTGTTGAGTATCTTGAGAGCAATGGTGTGAGGAGGGATTGGATGGGATA 890
||| |||| |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 840 ACTAAACGAAATTGTTGAGTATCTAGAGAGCAATGGTGTGAGGAGGGATTGGATGGGTTA 899
Query 891 TGTTGTTGGGCGATGTCCGGAGTTGTTGTCTTTTAGCATGGAAGAAGTGAAAAGCCGTGT 950
||| ||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||||
Sbjct 900 TGTGGTTGGAAGATGTCCTGAGTTGCTGTCTTTCAGCATGGAAGAAGTGAAAAGCCGTGT 959
Query 951 TGATTTCTTCTTGAAAATGGGTATGAATCAGAATGACTTTGGCACGATGGTTTATGATTA 1010
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 960 TGATTTCTTCTTGAAAATGGGTATGAATCAGAATGACTTTGGCACTATGGTCTATGATTA 1019
Query 1011 TCCAAAGATACTTGGGTACTTCTCATTCGAAGAGATGGAGAAAAAGATCAATTACCTGAA 1070
|||||||||| |||| | |||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1020 TCCAAAGATAATTGGCTTCTTCTCATTCCAAGTGATGGAGAAAAAGATCAATTACCTGAA 1079
Query 1071 AGAATTTGGCCTTAGCACAGAAGAAGTTGGGAGACTATTAGCCTTCAAGCCACACCTCAT 1130
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1080 AGAGTTTGGCCTTAGCACAGAAGAAGTTGGGAGACTATTAGCCTACAAGCCACACCTAAT 1139
Query 1131 GGGATGCAGTATTGAAGAAAGGTGGAAGCCTCTAGTCAAATATTTCTACTACCTTGGAAT 1190
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GGGATGCAGTATTGAAGAAAGATGGAAGCCTCTAGTCAAATATTTCTACTACCTTGGAAT 1199
Query 1191 CCCCAAAGAAGGAATGAAAAGAATCCTTGTCGTGAAACCAATTCTTTACTGCATTGATTT 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CCCCAAAGAAGGAATGAAAAGAATCCTTGTCGTGAAACCAATTCTTTACTGCATTGATTT 1259
Query 1251 GGAGAAGACAATCGCCCCAAAGGTAAGATTTTTGCAAGAGATGGGTATCCCTAATGAGGC 1310
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1260 GGAGAAGACGATCGCCCCAAAGGTAAGATTTTTGCAGGAGATGGGTATCCCTAATGAAGC 1319
Query 1311 CATTGGAAACATGTTAGTAAAGTTTCCTTCCTTACTCACAAACAGCCTCTACAAGAAAAT 1370
|||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 1320 CATTGGAAACATGTTAGTAAAGTTTCCTTCTTTACTTACAAATAGCCTCTACAAGAAAAT 1379
Query 1371 CCGACCTGTGGTGATTTTTCTCTTAACCAGAGCCGGAGTAACCCAAAAGGATATCGGTAA 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 CCGACCTGTGGTGATTTTTCTCTTAACCAGAGCCGGAGTAACCCAAAAGGATATCGGTAA 1439
Query 1431 AGTTATCGCAATGGATCCAGCTCTCCTTGGATGCAGCATAGGGACAAAGCTAGAACCCAA 1490
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1440 AGTTATAGCAATGGATCCAGCTCTCCTTGGATGCAGCATAGGGACGAAGCTAGAACCCAA 1499
Query 1491 CATGAGATACTATATATCATTGGGTATTCGATTTCATCAACTAGGCGAAATGATTGCTGA 1550
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1500 CATGAGATACTATATATCATTGGGAATTCGATTTTATCAACTAGGCGAAATGATTGCTGA 1559
Query 1551 TTTCCCGATGCTGCTTCGTTATAACGTTGATAATCTGCGTCCAAAATACCGTTACTTGCG 1610
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1560 TTTCCCGATGCTGCTTCGGTATAACGTTGATAATCTGCGCCCAAAATACCGTTACTTGCG 1619
Query 1611 AAGAACAATGATCCGTCCGCTTCAAGATCTCATTGAGTTTCCCAGATTCTTTAGCTACTC 1670
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1620 AAGAACAATGATCCGTCCGCTTCAAGATCTCATAGAGTTTCCCAGATTTTTTAGCTACTC 1679
Query 1671 ACTGGAGCGTCGGATAATCCCAAGGCACACCATTATGGTTGAGAACAGAGTTAACTTCAA 1730
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 ACTAGAGCGTCGGATAATCCCAAGGCACACCATTATGGTTGAGAACAGAGTTAACTTCAA 1739
Query 1731 GCTCAGATACATGTTGGCTTGTACGGATGAagagtttgagaggagagttagagataaagt 1790
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1740 GCTCAGATACATGTTGGCTTGTACGGATGAAGAGTTTGAGAGGAGAGTGAGAGATAAAGT 1799
Query 1791 ggagagaagagagagaTTCGAAGCTGGTCTTGACTCCGAGGATTC------G--GAATGA 1842
||||||||||||||||||||||||||| || ||||| |||||||| | | ||||
Sbjct 1800 GGAGAGAAGAGAGAGATTCGAAGCTGGCCTCGACTCTGAGGATTCTCAACCGTCGGATGA 1859
Query 1843 GAACATCATC-GATAAGGAGATTGATTTCTCAGACTCTCCGGAAGAAGAATGAAGAGGAT 1901
||||||| || ||| ||||||||| |||||||||| ||||||||||| || | | ||
Sbjct 1860 GAACATC-TCCGATCAGGAGATTGCTTTCTCAGACGAAGCGGAAGAAGAA-GA-G-G-AT 1914
Query 1902 TT-AGCATAATGAATAG--TTCT-G--TAC--A-TAGT-CTTGTACAGTT-AACACAATT 1950
|| | || |||||| || || | | || | |||| || |||||||| |||||||||
Sbjct 1915 TTGA-CAGAATGAAGAGGATT-TAGCATAATGAATAGTTCT-GTACAGTTTAACACAATT 1971
Query 1951 ATAAACGAACGAATGTGTCAATTAGTCT 1978
|||||||||||||||||| ||| |||||
Sbjct 1972 ATAAACGAACGAATGTGTGAATGAGTCT 1999
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97991463840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5