BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481037
Length=2117
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21720.1 | Symbols: | Plant protein of unknown function (DU... 2492 0.0
AT5G54870.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 52.8 1e-05
> AT2G21720.1 | Symbols: | Plant protein of unknown function (DUF639)
| chr2:9273696-9276802 FORWARD LENGTH=2205
Length=2205
Score = 2492 bits (1349), Expect = 0.0
Identities = 1543/1636 (94%), Gaps = 15/1636 (1%)
Strand=Plus/Plus
Query 1 ATGATTCTCAGTTTTCGGCTATTTGCATGGGAGTGCCACGTGGCATGTGGAGAAGTTGCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATTCTCAGTTTTCGGCTATTTGCATGGGAGTGCCACGTGGCATGTGGAGAAGTTGCC 60
Query 61 AGTGAACGAGTTATTCTCTCTACCTCAACGTCACTAAAACCGAATGCGAAAAGAATACAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 61 AGTGAACGAGTTATTCTCTCTACCTCAACGTCACTAAAACCGAATGCGAAAAGGA-A-AA 118
Query 121 ACAAATAGCAAAAGCAGAGaaaaaaaaaaCAGAGGATTCTCAGAGATCACGAGAGGAAGA 180
| |||||||||||||| | |||| |||||||||||||||||||||||||||||| ||||
Sbjct 119 A-AAATAGCAAAAGCA-A-AAAACTAAAACAGAGGATTCTCAGAGATCACGAGAGCAAGA 175
Query 181 AGAAGACGATGAGGAAGATGAAGCACTTGTCCTCCATTGCCAACGACGTCGTTCAGAGAT 240
| || |||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 176 A-AA--CGATGAGGAAGATGAAGCACTTGTCCTCCATTGCAAACGATGTCGTTCAGAGAT 232
Query 241 GCTCACAGGAACTAGAGACAACCATTGATGAATTAGTGGAAGAGTTTGAATGTCAATGGA 300
||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||
Sbjct 233 GCTCACAGGAACTAGAGACAACCATTGATGATTTAGTGAAAGAATTTGAATGTCAATGGA 292
Query 301 AGCCAGGAAGTACGGAAGGTTCTTACTCGAAGAAGTTTGTGGAATTTTGCAACTCAAAGG 360
|||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 293 AGCCAGGAAGCACGGGAGGTACTTACTCGAAGAAGTTTGTGGAATTTTGCAACTCAAAGG 352
Query 361 TTACGAGTCGGGTTTGTGAAAACATACTTGAGAGGATAAAAGACGGTTCGTTTAGC-CGT 419
| |||||||||||||||||||||||||||||||| |||||||| ||||| |||| | |||
Sbjct 353 TGACGAGTCGGGTTTGTGAAAACATACTTGAGAGAATAAAAGATGGTTCCTTTA-CACGT 411
Query 420 CTCACGTTCGATATGATGCTTGCTTGGCAACAACCTGACGCAGATGACAAGGAGTCTTAT 479
||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 412 CTCACGTTCGATATGATGCTTGCGTGGCAACAACCTGACGCAGATGATAATGAGTCTTAT 471
Query 480 AGGGAAGCAGTAGGGAAAGAGAGTGAAGACAAGAGGATTCAGGCAACTCTATCTCCAGAG 539
| |||||||||||| |||||||||||||||||||||||||| |||||| |||| ||||||
Sbjct 472 AAGGAAGCAGTAGGTAAAGAGAGTGAAGACAAGAGGATTCAAGCAACTTTATCCCCAGAG 531
Query 540 CAAGATGACATCTCTCTTTTTTATTCAGACATGATGCCGCTTCTCGTTGATCATGAACCA 599
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 CAAGATGACATCTCGCTTTTTTATTCAGACATGATGCCGCTTCTCGTTGATCATGAACCA 591
Query 600 AGTGTGGGTGCAGATGCATTTGTTTATTTAGGCTCAGTCATTCCTCTACCCGTGGATGTC 659
|||||||||| |||||| ||||| |||||||||||| |||||||||| ||||||||| ||
Sbjct 592 AGTGTGGGTGAAGATGCTTTTGTCTATTTAGGCTCAATCATTCCTCTTCCCGTGGATATC 651
Query 660 ATCAATGGAAGATACACATTTGAGACTCTAACTGCTCCGACAGG-CTACCAACTTCACTT 718
||||| ||||||||||||||||||||||||||||||||||| || | |||||||||||||
Sbjct 652 ATCAACGGAAGATACACATTTGAGACTCTAACTGCTCCGACCGGTC-ACCAACTTCACTT 710
Query 719 TCCGGCTTACGATATGTTCGTCAAAGAAATACACAAGTGTATGAAGCATTTGCAAAAGCA 778
|| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 711 CCCAGCTTATGATATGTTTGTCAAAGAAATACACAAGTGTATGAAGCATTTGCAAAAGCA 770
Query 779 AGCGAAGCCTAAAGGGGTCGAATTGGCGGATGATGAAATTATATTGCACGTTGAAGGAAC 838
| ||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 771 ATCGACGCCTAAAGGGATCGAATTAGCGGATGATGAAATTATATTGCACGTTGAAGGAAC 830
Query 839 AATGGCTTCACAGAGAGTGATTCGCCACATTAAAGAAACAAGCTGGCCAGGTAGGCTTAC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 AATGGCTTCACAGAGAGTGATTCGCCACATTAAAGAAACAAGCTGGCCAGGTAGGCTTAC 890
Query 899 TTTGACAAACTATGCACTATACTTCGAAGCCGCAGGAATTATAAACTATGAAGATGCTAT 958
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 891 TTTGACAAACTATGCACTATACTTCGAAGCCGCGGGAATTATAAACTATGAAGATGCTAT 950
Query 959 TAAGATAGATCTTTCCAAGGACAATGAAAAGTCTACAAAGCCTATGTCCACTGGTCCATT 1018
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 AAAGATAGATCTTTCTAAGGACAATGAAAAGTCTACAAAGCCTATGTCCACTGGTCCATT 1010
Query 1019 GGGTGCTCCTCTTTTTGACAACGCCATTGTCTACGAGTCTCCGGAATTTGAGGATGGAAT 1078
||||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||
Sbjct 1011 GGGTGCTCCTCTTTTTGACAAGGCCATTGTCTACGAGTCTCCAGATTTTGAGGAGGGAAT 1070
Query 1079 TGTCATAGAGTTTCCAGAGATGACAAGCTCAACGAGACGAGATCACTGGCTTATGCTTAT 1138
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1071 AGTCATAGAGTTTCCGGAGATGACAAGCTCAACGAGACGAGATCATTGGCTTATGCTTGT 1130
Query 1139 AAAGGAAATAACATTAATGCACAAGTTCTTGAGGAAATTTAATGTTGAGTCTCCCTTGCA 1198
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1131 AAAAGAAATAACATTAATGCACAAGTTCTTGAGGAAATTCAATGTTGAGTCTCCCTTGCA 1190
Query 1199 AGCATGGGAAATCCATTCAAGAACAATCTTGGGAATAGTACGGTTGCACGCAGCCCGCGA 1258
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1191 ATCATGGGAAATCCATTCAAGAACAATCTTGGGAATAATACGGTTGCACGCAGCCCGCGA 1250
Query 1259 AATGCTGAGAATCTCTCCCCCGGATCCAAAAAAGTTTTTAATATTTAGTTTATTTGAAGA 1318
||| | ||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 1251 GATGTTAAGAATTTCTCCCCCGGATCCAAAAAACTTTTTAATATTTAGTTTGTTTGAGGA 1310
Query 1319 AGTCCCAAAGGGAGACTACGTACTTGAAGAGCTCGCAGAGATTAGTCTAAAGATAGGCAC 1378
||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1311 AGTTCCAAAGGGAGACTATGTACTTGAGGAGCTCGCAGAGATTAGTCTAAAGATAGGCAC 1370
Query 1379 TACAAGGAACCCGTGTAGTGCTAGCTCCATATTGAGGAATATGAACATGGATCAGCTTGG 1438
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 TACCAGAAACCCGTGTAGTGCTAGCTCCATATTGAGGAATATGAACATGGATCAGCTTGG 1430
Query 1439 TGACATGATAAAAGAAGAGGGAGAAGATACATGTAAGGAGAAGGTG---AAAGTGACTGA 1495
||||||||||||||||||||| ||||||| ||| |||||||||||| |||||||||||
Sbjct 1431 TGACATGATAAAAGAAGAGGGTGAAGATATATGCAAGGAGAAGGTGGTCAAAGTGACTGA 1490
Query 1496 TAAAGAGGAAATGCTTGCGTCTCTTGAAAGTGCAGTGAATCAATCGAGAGAAGAGGGAAA 1555
|||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1491 TAAAGAAGAAATGCTTGCGTCTCTTGAGAGTGCAGTGAATCAATCTAGAGAAGAGGGAAA 1550
Query 1556 GGTTATTGAGGAGGCTAAAGCCACGACAGCGGAGCTCGAAGAAGAAGGGATTAGTGAAAG 1615
||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1551 GGTTATTGAAAAGGCTAGAGCCACGACAGCGGAACTCGAAGAAGAAGGGATTAGTGAAAG 1610
Query 1616 TGTAGCAGTTCTTATG 1631
||||||||||||||||
Sbjct 1611 TGTAGCAGTTCTTATG 1626
Score = 721 bits (390), Expect = 0.0
Identities = 445/472 (94%), Gaps = 2/472 (0%)
Strand=Plus/Plus
Query 1647 TACAGGGAGTGGGTTGGTAAGGCTATAGCTGCTTGCTTAATATGGGTGGTGGCAAAAATG 1706
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 TACAAGGAGTGGGTTGGTAAGGCTATAGCTGCTTGCTTAATATGGGTGGTGGCAAAAATG 1794
Query 1707 GCTCAGGCTAGAAATAAGACGGTCCACACAAAAAGTGAAGATGCGGTAACAGTGAGCACT 1766
||||| ||||||||||||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct 1795 GCTCAAGCTAGAAATAAGATGGTCCATACAAAAAGTGAGGATGCGGTAACAGTGAGCACT 1854
Query 1767 GAATCTGACCAAACAATGACCGAGAGCATTGTGTCGGCTCAGTATGGCTTAATAAGACTT 1826
||||||||||||||| |||| |||||||||||||| ||||| ||||||||||| ||||||
Sbjct 1855 GAATCTGACCAAACAGTGACTGAGAGCATTGTGTCTGCTCAATATGGCTTAATTAGACTT 1914
Query 1827 CATCAGTTGATGCAACATGTCAACGTCACCATCCTGAAATTGCGGTC-CATATATACCTC 1885
|| ||||||||||||||||| |||||||||||| ||||||||||||| | ||||||||||
Sbjct 1915 CACCAGTTGATGCAACATGTTAACGTCACCATCTTGAAATTGCGGTCTC-TATATACCTC 1973
Query 1886 CAAGGCTAGCAAGCATGCAAGCATGGTGATGGCATCGATGCTAGTGTTGGCGAGCTTCTT 1945
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1974 CAAGGCTAGCAAGCATGCAAGCATGGTGATGGCGTTGATGCTAGTGTTGGCGAGCTTCTT 2033
Query 1946 CGCAGTGGTGCCATTCAAGTTGTTCATAATATTTGGTACAATATATTGCTTTGTAATGAC 2005
|||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 2034 CGCAGTGGTGCCGTTCAAGTTGTTCATAATATTTGGTATAGTATATTGCTTTGTAATGAC 2093
Query 2006 ATCGAGTGTCGGAAGATACATGAGCAATGATCAGAGCAACCGGAGAATGAAAGAGTGGTG 2065
||| || ||||||| |||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 2094 ATCAAGCGTCGGAACATACATGAGCAACGATCAGAGTAACCGGAGAATGAAAGAGTGGTG 2153
Query 2066 GGATTCCATACCCATTGTACCCGTTCGTGTGCGTAACGCTTCGTCCAAGTAG 2117
|||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 2154 GGATTCCATACCCATTGTTCCCGTTCGTGTACGTAACGCTTCGTCCAAGTAG 2205
> AT5G54870.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G27020.1); Has
1807 Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:22289135-22291799
FORWARD LENGTH=1805
Length=1805
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Minus
Query 176 GAAGAAGAAGACGATGAGGAAGATGAAG 203
||||||||||||||||||||||||||||
Sbjct 49 GAAGAAGAAGACGATGAGGAAGATGAAG 22
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104969339595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5