BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481043

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21780.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   743    0.0  


> AT2G21780.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G39360.1); 
Has 13 Blast hits to 13 proteins in 2 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:9291036-9291669 
FORWARD LENGTH=634
Length=634

 Score =  743 bits (402),  Expect = 0.0
 Identities = 505/552 (91%), Gaps = 17/552 (3%)
 Strand=Plus/Plus

Query  1    CTCTACATGAACGATCCAATGGGAGAAACAGGATTTTCTAGAGAATCGGCGCCGGAGATC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  13   CTCTACATGAACGATCCAATGGGAGAAACAGGATTTTCTAGAGAATCGGCGCCGGAGATC  72

Query  61   GTGTTCTCGGAGACGGATATGGCCGCGGCTGAGCAGCTTATGCAGCTAAGCGAAGAAGAG  120
            ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| 
Sbjct  73   GTGTTCTCGGAGACGGATATGGCTGCGGCTGAGCAGCTTATGCATCTAAGCGAAGAAGAA  132

Query  121  ACGGTGAGCTGTAGCAGCAGCACCGGCGGAGATTGTGGCGGCGGAGGTGGAGACAAGACA  180
            ||||| ||||||||||||||||||||||||||||| || |||||||| |||||||||| |
Sbjct  133  ACGGTTAGCTGTAGCAGCAGCACCGGCGGAGATTGCGGTGGCGGAGGCGGAGACAAGATA  192

Query  181  AAGCATGAATATGTTAGCTCGAGAATCGGACACGAGCAAAACGACGGCGTACGAGGAAAC  240
            |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct  193  AAGCATGAATATGTTAGCTCGAGAATCGGAAACGAGCTAAACGACGGCGTACGAGGAAAC  252

Query  241  TCTATTCTTGGTGTGGAGAGGAAGAGGAAGAGGGCGGTGATGAAGGAAAAGAAGTTTCGA  300
            ||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct  253  TCTATTCTTGGCGTGGAGAAGAAGAGGAAGAGGACGGTGATGAAGGAAAAGAAGTTTCGA  312

Query  301  TCCCTCGAGAGTATTTACAAAGCAACGAAGGAGATTAGGGATTAATGGAGGAAAGGGATC  360
            || || ||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct  313  TCTCTTGAGAGTATTTACAAAGGGACGAAGGAGATTAGGGATTAATGGAGGAAAGGGATC  372

Query  361  GGAGA--TGGTTAATTAT----CGCTTCTTAATTACTTTTGTTAATCGTTGTTAGTAACC  414
            |||||  |||||||||||    || || |||||||||||||||||||| |||||||||||
Sbjct  373  GGAGAGATGGTTAATTATATATCGTTTGTTAATTACTTTTGTTAATCGATGTTAGTAACC  432

Query  415  TGTTCAATGGGCTTCTT--TGTGTGTATATGTTT--AGTCCTT----AATCTAACGTTGG  466
            | ||||||||  || ||  ||||||| ||| |||  |||||||    ||| |||||||||
Sbjct  433  TCTTCAATGGTTTTTTTGGTGTGTGTGTATATTTCTAGTCCTTGCTTAATTTAACGTTGG  492

Query  467  AGCTGGAGAATTTGTGATAATAGTTTTTGGAGATTTTCAGATTACAAT-TGTAAATATTT  525
            ||||| | |||||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct  493  AGCTGAA-AATTTGTGATAATAGTTTTTGGAGATTTTCAGATGA-AATCTGTAAATATTT  550

Query  526  TGGTTCACATAT  537
            |||||| |||||
Sbjct  551  TGGTTCTCATAT  562



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25719883264


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5