BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481045
Length=1417
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21800.2 | Symbols: EME1A | essential meiotic endonuclease 1... 1744 0.0
AT2G22140.1 | Symbols: ATEME1B, EME1B | essential meiotic endon... 891 0.0
> AT2G21800.2 | Symbols: EME1A | essential meiotic endonuclease
1A | chr2:9298155-9301926 FORWARD LENGTH=1872
Length=1872
Score = 1744 bits (944), Expect = 0.0
Identities = 1250/1394 (90%), Gaps = 35/1394 (3%)
Strand=Plus/Plus
Query 29 AACAAGTTTTCCGGTAAACGAGTAATATCTCTTGAGTCGGATTCTGAAGACAGCT-CTCG 87
||||| |||| |||||||||||| ||||||||||| ||||||||||||||||| | || |
Sbjct 282 AACAATTTTTTCGGTAAACGAGTTATATCTCTTGAATCGGATTCTGAAGACAG-TCCTGG 340
Query 88 ACCTGGGACTTCAAAGAAGTATGAACCCGTGGATGCTGATTCTTGGAAGCAGCCTTGTAC 147
||||| || |||||| ||||||||||| || || |||||||||||||| | |||||||
Sbjct 341 ACCTGAGAGTTCAAAAAAGTATGAACCTGTTTATACTGATTCTTGGAAGAAACCTTGTAG 400
Query 148 ATTGAAATCTGGATCCAGTGATGCTGATTCTGATGATGATACTAGCTGGATGCAGCGACC 207
|||| ||| |||||||||||||||| |||||||||||||| |||| ||||||| | || |
Sbjct 401 ATTGGAATTTGGATCCAGTGATGCTAATTCTGATGATGATCCTAGTTGGATGCGGAGAGC 460
Query 208 TAGTTTTCGATCTAC-CATGTCTAAAGAGGCTATTGGGGTAGATTCTGACCATGAGAAAG 266
|||||||| |||| | | |||||||||| ||||||| |||||||||||||||||||||||
Sbjct 461 TAGTTTTCAATCTTCGC-TGTCTAAAGATGCTATTGAGGTAGATTCTGACCATGAGAAAG 519
Query 267 AAGATACAAGTGTTGAGAA-ATTGCGTCGACAAAAGCAGAGCAGAAGTTCTAAAAGTACA 325
|||||||| | |||||||| | || ||||| ||||||||| || || |||||||||||||
Sbjct 520 AAGATACAGGCGTTGAGAAGA-TGGGTCGAAAAAAGCAGACCATAACTTCTAAAAGTACA 578
Query 326 TCTCTTTCTGCTGATGAATTGCCTaaaaagcagatgtcaaaaaatgaaaaagtccgagcg 385
||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||| |||
Sbjct 579 TCTCTTTCTGCTGATTCATTGCCTAAAAAGAAGATGTCAAAAGATGAAAAAACCCGCGCG 638
Query 386 tcagaggaaaagaagtta-agaaaagaacaagagaaaTTACAAAAAGCCGCCACGAAAGC 444
||||||||||||||||| | |||||||||||| |||||||| ||||| ||| |||||||
Sbjct 639 GCAGAGGAAAAGAAGTTACA-AAAAGAACAAGAAAAATTACAGAAAGCTGCCTCGAAAGC 697
Query 445 TGAAGATGCTGAGCATAAAAAGTTGGAGAAGGAAAAGCAGAAATGGGC-----AAAA-GA 498
|||||||||||||||||||||||||||| |||||||||||||||||| |||| ||
Sbjct 698 AGAAGATGCTGAGCATAAAAAGTTGGAGAGGGAAAAGCAGAAATGGGCAAAGGAAAAGGA 757
Query 499 CAAAGCGCTTAAATCTATTGTCGCCTTGATTGACAATAAATTAG-TTGAAGAATCTGTT- 556
||||| ||||||| |||||| |||| ||||||||||||| | | |||||| |||| ||
Sbjct 758 TAAAGCACTTAAATGTATTGTTGCCTGGATTGACAATAAAGT-GCTTGAAGGATCTTTTG 816
Query 557 G-G-------AGGACGTCTCATTTCGGGGTTGCAAGAGAAAGGCATTACATACCGTGTAA 608
| | ||||| |||||||||||| ||| |||||||| | |||||||||| ||| |
Sbjct 817 GAGTTATTACAGGACTTCTCATTTCGGGATTGAAAGAGAAATGTATTACATACCATGTCA 876
Query 609 CCTCTAATCCAATTGAAAGATCCATCGTGTGGACAATGACACTTCCAGAGGATATTGCTC 668
|| ||||||| ||| | |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 877 CCACTAATCCGATTCAGAGATCCATTGTGTGGACAATGACACTTCCAGAAGATATTGCTC 936
Query 669 AGACTTTACCCCTAGGGTCCAAGATTCCATATGTTTTACT-TATGTATGAGGCTGAAGAC 727
|| | || || ||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 937 AGTCATTGCCTCTAGGGTCCAAGATTCCATATGTTTTACTCT-TGTATGAGGCTGAAGAC 995
Query 728 TTTTGTAATCTTGTTGCTAATAAAGAACTTCTCGAAAACGTCTCCAGAGTCCGTGACAAA 787
|||||||||||||||||||| ||||||||||| |||||||||| |||||| |||||| ||
Sbjct 996 TTTTGTAATCTTGTTGCTAAGAAAGAACTTCTAGAAAACGTCTACAGAGTTCGTGACGAA 1055
Query 788 TACCCATCTTATA-AGATGTGCTACCTCACCAATAGGTTAATGTCCTACGTaaaaaaaaa 846
||||||||||||| | ||||||||||||||||||| |||| ||||||||||||| |||||
Sbjct 1056 TACCCATCTTATACA-ATGTGCTACCTCACCAATAAGTTACTGTCCTACGTAAACAAAAA 1114
Query 847 GGAGAGTGTTGAGTACAAGGACCCTGTTAATCGCAGTGGTTGGAGAAAGCCTCCTATTGA 906
||| || |||||||||||||||||||| ||| || |||||||||||||||||||||||||
Sbjct 1115 GGAAAGGGTTGAGTACAAGGACCCTGTAAATGGCTGTGGTTGGAGAAAGCCTCCTATTGA 1174
Query 907 TGAGGCAATTGCAG-AGTTAACTACTCACTACACTGGAGTACATTCCAGACACTGTGTAG 965
|||||||||||| | ||||| | |||||||| | ||||||||||||| | || |||||||
Sbjct 1175 TGAGGCAATTGC-GAAGTTATCAACTCACTATATTGGAGTACATTCCCGGCATTGTGTAG 1233
Query 966 ACGAGGCTGAGGTGGCTGACCATCTTGTTCGTTTAACAAGTAATCTGGCCTATTGCCAAG 1025
||||||||||||||||||||||| ||||||| |||||||||| ||||||| |||||||||
Sbjct 1234 ACGAGGCTGAGGTGGCTGACCATGTTGTTCGGTTAACAAGTAGTCTGGCCCATTGCCAAG 1293
Query 1026 TCAGGAATAAGTTAACTCGGTTATCAGTATGCGCTGATGGTACATTAATGTCCAAGAATG 1085
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1294 TCAGGAAGAAGTTAACTCGGTTATCAGTATACGCTGATGGTACATTAATGTCCAAGAATG 1353
Query 1086 CAGCTGATAAGCACTTGATTAGAGAGAGCCTATGGTTGAAAGTGTTGGTAGCAATACCAA 1145
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1354 CAGCTGATAAGCACTTGATTAGAGAGAGCATATGGTTGAAAGTGTTGGTAGCAATACCAA 1413
Query 1146 AGGTACAGCCAAGATACGCTGTAGCAGTGTCGAAGAAATACCCATCCTTGAAGTCCCTTC 1205
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||
Sbjct 1414 AGGTACAGCCAAGATACGCTATAGCAGTGTCAAAGAAATACCCATCCTTGAAGTCACTTC 1473
Query 1206 TTAAGGTTTATATGGATCCTAACATATCGGTTCATGAGAAGGAGTTTCTACTGAAAGATT 1265
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1474 TTAAGGTTTATATGGATCCTAACATATCGGTTCATGAGAAGGAGTTTCTACTGAAAGACT 1533
Query 1266 TGAGAGTGGAAAATTTAGTAGGA-GAAGACAAAA-TGGTTGGTGATGCCTGTTCGAAGCG 1323
||| ||||||||||||||||||| || |||| || || | ||||| ||||||||||||||
Sbjct 1534 TGAAAGTGGAAAATTTAGTAGGAAGA-GACACAAGTG-TAGGTGAGGCCTGTTCGAAGCG 1591
Query 1324 GATATACAGAGTGCTTATGTCTTTAGATGGAACAATTAAGACTGATGACGTCGAAAATGG 1383
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1592 GATATACAGAGTGCTTATGTCTTTAGATGGAACCATTAAGACTGATGACGTCGAAAATGG 1651
Query 1384 TGCTGCTTCCTTCA 1397
||||||||||||||
Sbjct 1652 TGCTGCTTCCTTCA 1665
> AT2G22140.1 | Symbols: ATEME1B, EME1B | essential meiotic endonuclease
1B | chr2:9414839-9418668 REVERSE LENGTH=1796
Length=1796
Score = 891 bits (482), Expect = 0.0
Identities = 1004/1247 (81%), Gaps = 71/1247 (6%)
Strand=Plus/Plus
Query 182 GATGATACTAGCTGGATGCAGCGACCT-AGTTTTCGATC-T-ACCATGTCTAAAGAGGCT 238
||||||||||| |||||||| || | |||||||| || | ||| |||| || ||
Sbjct 511 GATGATACTAGTTGGATGCA-TGAAGTCAGTTTTCGCTCTTCGCCA--ACTAATGATACT 567
Query 239 ATTGGGGTAGATTCTGACCATGAGAAAGAAGATACAAGTGTTGAG-AAATTGCGTCGACA 297
|||| ||| | ||||||||| || ||||| |||| ||| |||||| |||||| ||||| |
Sbjct 568 ATTGAGGTTGTTTCTGACCAAGAAAAAGAGGATATAAGCGTTGAGAAAATTG-GTCGAAA 626
Query 298 AAAGCAGAGCAGAAGTTCTAAAAGTACAT-CTCTTTCTGCTGATGAATTGCCTaaaaagc 356
|||| ||| ||||| ||| || | | | | || | | ||| | |||||| |||||||
Sbjct 627 AAAGAAGATCAGAA---CTACAACT-CTTCCAGTTCCAGGTGAGGCATTGCCAAAAAAGC 682
Query 357 ag-atgtc-aa--aaaatgaaa-aagtccgagcgtcagaggaaaagaagttaagaaaaga 411
| | ||| || || | ||| |||| | | | |||||||||||||||||||||||
Sbjct 683 GGCA-GTCGAAGGAAGACAAAACAAGTGC-A--AT-GGAGGAAAAGAAGTTAAGAAAAGA 737
Query 412 acaagagaaaTTACAAAAAGCCGCCACGAAAGCTGAAGATGCTGAGCATAAAAAG-TTGG 470
||||||| |||| | ||||| ||| | ||||| ||||| ||||||| | ||||| || |
Sbjct 738 GCAAGAGAGATTAGAGAAAGCAGCCTCAAAAGCAGAAGAGGCTGAGCGT-AAAAGATTAG 796
Query 471 AGAAGGAAAAGCAGAAATGGGCAAAA--GACAA---AGCGCTTAAATCTATTGTCGCCTT 525
||||||| ||| | ||||||| |||| || || ||| |||||||||||||| |||
Sbjct 797 AGAAGGAGAAGAAAAAATGGG-AAAAGGGA-AAGTTAGCCCTTAAATCTATTGTTGCCGA 854
Query 526 GATTGACAATAAATTAG-TTGAAGAATCTGTTGGAGGACGTCT-CATTTCGGGGTTGC-A 582
|||||| | |||| | | |||||| ||| ||||||||| ||| | |||| |||| |
Sbjct 855 GATTGATACTAAAGT-GCTTGAAGGATCCATTGGAGGACTTCTGC-TTTCAAGGTT-CTC 911
Query 583 AGAGAAAGGCATTAC-ATACCGTGTA-ACCTCTAATCCAATTGAAAGATCCATCGTGTGG 640
|||||||||||||| || || ||| || ||||||||||||| |||||||| ||||||
Sbjct 912 TGAGAAAGGCATTACAAT-CCACGTAGGCC-CTAATCCAATTGAGAGATCCATTGTGTGG 969
Query 641 ACAATGACACTTCCAGAGGATATTGCTCAGAC-TTTACCCCTAGGGTCCAAGATTCCATA 699
|| |||||| |||||||||||||||||| | | ||| |||| |||| |||||||||| ||
Sbjct 970 ACGATGACAATTCCAGAGGATATTGCTCCG-CTTTTCCCCCAAGGGCCCAAGATTCCTTA 1028
Query 700 TGTT-TTACTTATGTATGAGGCTGAAGACTTTTGTAATCTTGTTGCTAAT-AAAGAACTT 757
| || ||||| ||||||| |||||||| ||||||||||||||||||||| || || ||
Sbjct 1029 T-TTGCTACTTGTGTATGACGCTGAAGAATTTTGTAATCTTGTTGCTAATGGAA-AATTT 1086
Query 758 CTCGAAAACGTCTCCAGAG-TCCGTGACAAATACCCATCTTATAAGATGTGCTACCTCAC 816
|| |||| | |||| |||| || | |||| |||||||||||||| | |||||| ||||||
Sbjct 1087 CTAGAAATCATCTCAAGAGTTCAG-GACAGATACCCATCTTATACGGTGTGCTGCCTCAC 1145
Query 817 CAATAGGTTAATGTCCTACGTaaaaaaaaaGG-AGAGTGTTGAGTACAAGGACCCTGTTA 875
|||| |||||||||||||||||| |||| || | || | |||||||| | || | |
Sbjct 1146 GAATAAGTTAATGTCCTACGTAAAGAAAAGGGAAAAG-GAAGAGTACAAAAATCC-GGGA 1203
Query 876 ATCGCAGTGGTTGGAGAAAGCCTCCTATTGATGAGGCAATTGCAGAGTTAACTACTCACT 935
| | ||||||| ||||||||| ||||||| | ||||| | |||||||||||||
Sbjct 1204 A----A----TTGGAGACGGCCTCCTATCGATGAGGTACTTGCAAAATTAACTACTCACT 1255
Query 936 ACACTGGAGTACATTCCAGACACTGTGTAGACGAGGCTGAGGTGGCTGACCATCTTGTTC 995
| | |||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1256 ATGTTAAAGTACATTCCAGACACTGTGTAGACGAGGCTGAGGTGGCTGAACATATTGTTG 1315
Query 996 GTTTAACAAGTAATCTGGCCTATTGCCAAGTCAGGAATAAGTTAACTCGGTTATCAGTAT 1055
| ||||||| | |||||||| ||||||| ||||||| || |||||| ||||||||||
Sbjct 1316 GCCTAACAAGCAGTCTGGCCTCTTGCCAATTCAGGAAGAAATTAACTATGTTATCAGTAA 1375
Query 1056 GCGCTGATGGTACATTAATGTCCAAGAATGCAGCTGATAAGCACTTGATTAGAGAGAG-C 1114
||||| ||||| ||||| | |||||| || ||| ||| ||||| ||||||| | |||| |
Sbjct 1376 GCGCTAATGGTGCATTAGTCTCCAAGGATTCAGTTGACAAGCATTTGATTAAAAAGAGTC 1435
Query 1115 CTATGGTTGAAAGTGTTGGTAGCAATACCAAAGGTACAGCCAAGATACGCTGTAGCAGTG 1174
| |||||| |||| ||| |||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1436 C-ATGGTTAAAAGCGTTAGTAGCAATACCAAAGGTACAGCCACGATACGCTTTAGCAGTG 1494
Query 1175 TCGAAGAAATA-CCCATCCTTGAAGTCCCTTCTTAAGGTTTATATGGATCCTAACATATC 1233
| ||||||||| ||| ||| ||||||| |||||||||||||||||||||| ||||| |||
Sbjct 1495 TGGAAGAAATATCCC-TCCATGAAGTCTCTTCTTAAGGTTTATATGGATCGTAACAAATC 1553
Query 1234 GGTTCATGAGAAGGAGTTTCTACTGAAAGATTTGAGAGTGGAAAATTTAGTAGGAGAAGA 1293
|||||||||||||||||||||||| ||||| |||| ||| ||| |||||| |||| |||
Sbjct 1554 GGTTCATGAGAAGGAGTTTCTACTAAAAGACTTGAAAGTAGAAGGTTTAGTGGGAGGAGA 1613
Query 1294 CAAAATGGTT-GGTGATGCCT-GTTCGAAGCGGATATACAGAGTGCTTATGTCTTTA-GA 1350
|| || |||| ||||| | | |||| ||||||||||||||||| || |||||| | ||
Sbjct 1614 CATAA-GGTTAGGTGA-GATTTGTTCAAAGCGGATATACAGAGTTCTCATGTCTC-ACGA 1670
Query 1351 TGGAACAATTAAGACTGATGACGTCGAAAATGGTGCTGCTTCCTTCA 1397
|||| | |||||||||||||||||||||||||||||||||| |||||
Sbjct 1671 TGGAGCCATTAAGACTGATGACGTCGAAAATGGTGCTGCTTTCTTCA 1717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69828958095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5