BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481046

Length=319
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21820.1 | Symbols:  | unknown protein; Has 45 Blast hits to...   396    7e-110


> AT2G21820.1 | Symbols:  | unknown protein; Has 45 Blast hits 
to 45 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:9302885-9303247 REVERSE 
LENGTH=363
Length=363

 Score =  396 bits (214),  Expect = 7e-110
 Identities = 242/256 (95%), Gaps = 0/256 (0%)
 Strand=Plus/Plus

Query  1    TATCATCAACAATGTCGGGAGCACAAGGAGCAGAGCCGATGGGGTCAAGAACGGCGACAA  60
            |||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct  18   TATCATCAACGATGTCGGGAGCACAAGGAGCAGAGCCGATGGATTCAAGAACGGCGACAA  77

Query  61   CGTACGAATCGGTGGAAGGAGGACAAAACAAGACGAAGCTTGATATAAAGTCAAAGGAAG  120
            ||||||| || |||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct  78   CGTACGAGTCAGTGGAAGGAGGACAGAACAAGACGAAGCTTGATATAAGGTCAAAGGAAG  137

Query  121  ACGAAGGTGGAATTCAAGTTGACAAGCTTCAAGACAAGGTCTCAGATGCTGTTGGTCTTG  180
            |||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct  138  ACGAAGGTGGGATTCAAGTTGACAAGCTTCAAGACAAGGTCTCTGATGCTGCTGGTCTTG  197

Query  181  GCGGACCTGTGTTTGGTGCTGGTAAAGATGACAAGAAGCAGGATCTTGGTGTTACCGGTA  240
            |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  198  GCGGACCTGTCTTTGGTGCTGGTAAAGACGACAAGAAGCAGGATCTTGGTGTTACCGGTA  257

Query  241  CTGGCTAGATCTCTGT  256
            | |||||| |||||||
Sbjct  258  CCGGCTAGGTCTCTGT  273



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14828985955


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5