BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481047
Length=2532
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21840.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 2885 0.0
> AT2G21840.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr2:9307060-9310058 REVERSE LENGTH=2654
Length=2654
Score = 2885 bits (1562), Expect = 0.0
Identities = 2070/2307 (90%), Gaps = 67/2307 (3%)
Strand=Plus/Plus
Query 1 CTCTCGATGGGAAAGCTCCAACATGGATCTCACGAATGCGAGTTGACCTCGCCGGGGATC 60
|||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||
Sbjct 11 CTCTCGATGGGAAAGCTCCAACATGGATCTCATGAGTGCGAGTTGACCTCGCGGGGGATC 70
Query 61 GTTGCAAATGGGATCTGCAACATCTGCTTCAAAGATGAACCTGTTGAATTCGCCTGTGAC 120
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 GTCGCAAACGGGATCTGCAACATCTGCTTCAAAGATGAACCTGTTGAATTCGCCTGTGAC 130
Query 121 CCTTGTAATTTCGATCTCTGCAAACCTTGCTCCGATCTTCCCCAGCAAATGTCACACCAT 180
||||| |||||||||||||||||| ||||||| |||||||||||| ||||||||||||||
Sbjct 131 CCTTGCAATTTCGATCTCTGCAAAGCTTGCTCAGATCTTCCCCAGAAAATGTCACACCAT 190
Query 181 CTTCATCCGGAGCACCCTCTAGAGTTTCGTATTGGCGAAGATGATCGGAAGACCAAATAC 240
||||||||||||||||||||||| |||||||| ||||||||||||| |||||| ||| ||
Sbjct 191 CTTCATCCGGAGCACCCTCTAGAATTTCGTATAGGCGAAGATGATCAGAAGACTAAACAC 250
Query 241 ATGGTGTGCGTCGGGTGCGGAAACATGTCTTCTGGAACC---TACTACTACGAGTGTAAC 297
||||||||||||| |||||||||||||||||||||| || ||||| |||||||||| |
Sbjct 251 ATGGTGTGCGTCGTGTGCGGAAACATGTCTTCTGGAGCCAAATACTATTACGAGTGTAGC 310
Query 298 AAGTGTGAGATCTATCTTGATTTGGGTTGTGCACTTCACAAGAGCATAACAACGGGTTGG 357
|||||||||||||| || |||||||| ||||||||||| |||| |||| | ||| |||||
Sbjct 311 AAGTGTGAGATCTACCTCGATTTGGGCTGTGCACTTCAGAAGAACATAGCGACGAGTTGG 370
Query 358 GAAGCCAAAGAGATGCTCCATTACAGCCATGAACACC-AGCTTAAGAGGTGTAGGCCGGG 416
||||||||||| |||||||||||||||||||||||| | ||||| ||||||||||| ||
Sbjct 371 GAAGCCAAAGAAATGCTCCATTACAGCCATGAACACTTA-CTTAAAAGGTGTAGGCCAGG 429
Query 417 ACCAGATTCCAGAGGCTCTTGCCTTCTCTGTGAGCAACCTCTCTCTTTCACTGCAATATG 476
||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 430 ACCAGATTCCAAAGACTCTTGCCTTCTCTGTGAGCAACCTCTCTCCTTCACTGCAATATG 489
Query 477 TTACGGTTGCGTTCACTGTTACTTGTTTTTACACGAGCGTTGCCTTGATCTTCCAACAGA 536
||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 490 TTACGGTTGCGTTCATTGTTACTTGTTTTTTCACGAGCGTTGCCTTGATCTACCAACCGA 549
Query 537 GATTCAACATCCCGTGCATCCTCTGCACCCTCTCAAACGCCTTGATTATATACAAACTTT 596
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 550 GATTCAACATCCCGTGCATCCTATGCACCCTCTCAAACGCCTTAATTATATACAAACTTT 609
Query 597 TGACGGTCG-GAAGTCTTGTAGTGCATGT-ACAGGCAAATTTGTTGGTGTCCCATTTGGT 654
||||||| | ||| ||||||| ||| ||| || ||| |||||||||||||||||||||||
Sbjct 610 TGACGGT-GAGAAATCTTGTAATGCCTGTCAC-GGCCAATTTGTTGGTGTCCCATTTGGT 667
Query 655 TGCTTAGAATGTGGGTTTTACCTTCATCTGAGATGTGCAGATGCCTTGTTGTGGGGTTTG 714
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 668 TGCTTAGGATGTGGGTTTTACCTTCATCTGAGATGTGCAGATGCCTTGTTGCGGGGTTTG 727
Query 715 TTGCATAAGTCTCATGAACACAGGTTGTTTTATGTACAA-GATACTCGTCGTGTCGCTGA 773
||| ||||||| |||||||||||| | ||||||||| || | |||||||||||| |||||
Sbjct 728 TTGTATAAGTCCCATGAACACAGGCTATTTTATGTAGAAAG-TACTCGTCGTGTTGCTGA 786
Query 774 TGATAGAGTAAAATGCCCATGTATAATATGCGAAG-AAACTGTGGTCTATGACAGTTTTT 832
||| ||||||||| |||||| |||||||| ||| |||| |||||||||||||| || |
Sbjct 787 TGAAAGAGTAAAACAACCATGTCTAATATGC-AAGGAAACCGTGGTCTATGACAGATTCT 845
Query 833 ATTATATATGCGTCGAATGTGATTTGAAATGTCATACCAAGTGTCTTGAGATACCTGAAT 892
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 ATTATTTATGCGTGGAATGTGATTTGAAATGTCATACCAAGTGTCTTGAGATACCTGAAT 905
Query 893 ATGTGGTCAGGAAATCCTATCACATCCATCAACTTAGATATAAAAGAGTCGGAGCGGAGG 952
||||| ||| ||||||||||||||||||| ||||||||| || ||||||||||| |||||
Sbjct 906 ATGTGATCAAGAAATCCTATCACATCCATAAACTTAGATTTATAAGAGTCGGAGGGGAGG 965
Query 953 ATGATTTTTTGGAGTATTGTGGTGTTTGTGAGACTCTGTTACATT-CAGGACATCCTGCG 1011
| ||||||||||||||||||||||||||||||||| || || ||| || || ||||||
Sbjct 966 ACGATTTTTTGGAGTATTGTGGTGTTTGTGAGACTATGGTA-ATTTCACGATATCCTGAA 1024
Query 1012 TATTCCTGTGAAGAATGTGATTTTCTTGGTCACACTGAATGCATTCTACGCGAGGAAGTA 1071
|||||||||||||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 1025 TATTCCTGTGAAGAATGTGATTTTGTCGGCCACACTGAATGCATTCTACGCGAGGAAGTG 1084
Query 1072 CCTTCCCCATTGTACTTGAAAGATTTGTACTCTTGCAGCAAAGACACAAGATCCAAAAAT 1131
||||||||| ||||||||||||||||||||||||||||||||| || | | | |||| |
Sbjct 1085 CCTTCCCCAATGTACTTGAAAGATTTGTACTCTTGCAGCAAAGGCA-AC-A-C-AAAA-T 1139
Query 1132 CTTACAGACCTTGAAACCAGTGAATCAGAAGATATGTTACTGGTTAATAGCTTCAATCAT 1191
| | | | |||||||||| ||||| ||||||| |||||||||||||||||||| ||||
Sbjct 1140 CCCA-ACATCTTGAAACCATTGAATTTGAAGATAGGTTACTGGTTAATAGCTTCAGTCAT 1198
Query 1192 ATTCATGTGATGAGACTGATCCACATGAGTGAGCTTGAGGAAGAAGGAAAGTGCAACATG 1251
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 ATTCATGTGATGAAACTAATCCACATGAGTGAGCTTGAGGAAGAAGGAAAGTGCAACATG 1258
Query 1252 TGTGGTACAAAGATACATGATAATCCTTGCAAATGTGAGACATGTAGCTTCCAATCACAT 1311
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TGTGGGACAAAAATACATGATAATCCTTGCAAATGTGAGACATGTAGCTTCCAATCACAT 1318
Query 1312 GATTTCTGTGCAGAGCTTGGGCGACCATCAAGGCATCAATTTCATTTGAACCATTTTTTG 1371
||||| ||||||||||||||||||||||||| |||||| |||||||| ||||||| ||||
Sbjct 1319 GATTTTTGTGCAGAGCTTGGGCGACCATCAAAGCATCAGTTTCATTTAAACCATTCTTTG 1378
Query 1372 ACCCTTCTACCAAATTCCCCTAGATGGATTC-AAGGTACGTGTAAGTCCTGCAAAG-CTG 1429
||||||||||||||| ||||||||||| || |||| | |||| |||| ||||||| | |
Sbjct 1379 ACCCTTCTACCAAATACCCCTAGATGGTTTAGAAGGAA-GTGTGAGTCATGCAAAGAC-G 1436
Query 1430 ATATAAAAGGGTACAATCTCTTCTGTCGTATATGCAATTTTATCATCGACATCAATTGCG 1489
||||| |||| ||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1437 ATATAGGCGGGTTCAATCTCTTCTGTCGTATATGCAATTTCATCATCGACATCAACTGCG 1496
Query 1490 CTTTGAAAGACaaaaaaaTGCATGGTGCATTACACATGGGTCAGA---T-A--GGA-C-T 1541
|||||||||| ||||||||||||||||||||||| | |||||||| | | ||| | |
Sbjct 1497 CTTTGAAAGATAAAAAAATGCATGGTGCATTACAAAGGGGTCAGAAAATCATTGGAACAT 1556
Query 1542 --TT-G--C-----ATACAAGACAAACATAGCTTGTTCCAAGTTATTGTCTCAAGGTCAC 1591
|| | | ||||||||||||||||||||||| |||||||| || ||| |||||
Sbjct 1557 GGTTAGGACTTTGCATACAAGACAAACATAGCTTGTTTCAAGTTATCGTTTCACGGTCAT 1616
Query 1592 ATCCTATCGCTTGTTCTATATGTGATGAGAAGTTGTGTGGAAAGGCTTTTTCATGTGTGA 1651
|||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1617 ATCCTATCACTTGTTCTATTTGTGATGAGAAGTTTTGTGGAAAGGCTTTTTCATGTGTGA 1676
Query 1652 TGTGTGAAGATATATATCACCCTCTGTGTATCCAAGTTGGGAGGC-AAGTACTAGTTGGT 1710
|||||||||||||||||||||| ||||||||||||||||||||| || | |||||||||
Sbjct 1677 CGTGTGAAGATATATATCACCCTATGTGTATCCAAGTTGGGAGGCGAATT-CTAGTTGGT 1735
Query 1711 CATCCACTTCAT-TCTGATCACATGCTAGCAATTTCACTGCTTGAAAGTAGATCCAAGTG 1769
|||||||||||| | |||||||||||||||||||||||| | ||||| ||||||||||
Sbjct 1736 CATCCACTTCATGT-TGATCACATGCTAGCAATTTCACT--TA-AAAGTGGATCCAAGTG 1791
Query 1770 CACGGCCTGCCAACTGAATATTACAACAAAGTATGGCTATCTTTGTACCATTTGCAAAAT 1829
||||||||||||||||||||| |||| || |||||||||| ||||||||| ||| ||||
Sbjct 1792 CACGGCCTGCCAACTGAATATAACAA-AA--TATGGCTATCATTGTACCATCTGCGAAAT 1848
Query 1830 CAATTTCCATATTGATTGCATCAAAGCAGTGGTAGTACCAAGCAAGATCAAATCTCATAG 1889
||||||||||||||| ||||||||||||||| |||||||||| |||||||| ||||||||
Sbjct 1849 CAATTTCCATATTGAATGCATCAAAGCAGTGATAGTACCAAGAAAGATCAAGTCTCATAG 1908
Query 1890 GCACTATCTCTATAACTTTTGGAACAATGATTTAAGGGTGACTCGAGCTTGCAGTGTTTG 1949
|||||| |||||||||||||||||||||||| |||||||||||||||||| |||| ||
Sbjct 1909 TCACTATTTCTATAACTTTTGGAACAATGATTCGAGGGTGACTCGAGCTTGCGGTGTGTG 1968
Query 1950 CACTAGACCATGTGGTTTGTCGTTCTACGGATGTATTGACTGTATGTTCAGCGCACATGT 2009
| |||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1969 CTCTAGACCATGTGGTGTGTCGTTCTACGGATGTATTGACTGTATGTTCAACGCCCATGT 2028
Query 2010 AGAGTGTGTTGGGTTTCCAGCTAATGTGAAGAACCAACGGCATCAGCATACTCTCACACA 2069
||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 2029 AGAGTGTATTGGGTTTCCAGCTAATGTGAGGAACCAACGGCATGTGCATACTCTCACACA 2088
Query 2070 AGTATACACTTCTCACAGGAAAAAATGGTCTGTCCGTGAATCA-T-ACATGGAT-GATAT 2126
||||||||||||||||||| ||||||||||||||||||| || | |||||||| | |||
Sbjct 2089 AGTATACACTTCTCACAGGGAAAAATGGTCTGTCCGTGA--CAATTACATGGATCG-TAT 2145
Query 2127 ATATTACGCATGTTATCATTGCGAGCATGGATATGAT---AGTCAAACTATAATGTCTAA 2183
|| |||| ||| |||| |||||| | ||| || | | | ||| |||||||||||
Sbjct 2146 ATCTTACAAATGCTATCCTTGCGAT-A-GGA-ATTTTCCCACTGAAAGGATAATGTCTAA 2202
Query 2184 GGACGACCGTGAGG-AAGCAACAGAAGAGGAACAACTTCAAGACATTTATCTTATGTACC 2242
||| |||||| ||| || ||||||||||| |||||| ||||||| ||||||||| |||
Sbjct 2203 GGATGACCGT-AGGGAAACAACAGAAGAGAAACAACAGAAAGACATCTATCTTATGCACC 2261
Query 2243 TTGAGCGTGATCTCATTGACCTTTTAG 2269
|||||||||||||||||||||||||||
Sbjct 2262 TTGAGCGTGATCTCATTGACCTTTTAG 2288
Score = 287 bits (155), Expect = 4e-76
Identities = 196/215 (91%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 2279 CCTCTTCGTTTGGTTCTGCCTCCCTATATGAAACTGAATACTGAAATTTCCCTTATCTGA 2338
|||||| |||||||||||||||||| ||||||||||||||| |||| ||||||||||||
Sbjct 2332 CCTCTTAGTTTGGTTCTGCCTCCCTTTATGAAACTGAATACGGAAAAATCCCTTATCTGA 2391
Query 2339 GGTTATGCCTCAACCTCTTCTCtttttttttttATCGTGTTTTTACAATGGAAGGTGGCA 2398
||||||||||||| |||||||| |||| |||||||||||| ||||| ||||||||
Sbjct 2392 GGTTATGCCTCAATCTCTTCTC---GTTTTCTTATCGTGTTTTAACAATAAAAGGTGGCG 2448
Query 2399 TGTTCGAAGACTTGAGACTCTGATGAGTCTTAATTTGTTATGCCTCCCTCTCTTAAATGC 2458
|||||||||||||| | |||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 2449 TGTTCGAAGACTTG-G-CTCTGATGAGTCTT-ATTTGTTATGCCTCCCTCTCTCAAATGC 2505
Query 2459 AACTTCAGTGAACTAAAGTTATGTTTCAGAATTCT 2493
|||||||||||||||||||||||||||||||||||
Sbjct 2506 AACTTCAGTGAACTAAAGTTATGTTTCAGAATTCT 2540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125668192215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5