BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481048
Length=1617
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21860.1 | Symbols: | violaxanthin de-epoxidase-related | c... 2207 0.0
> AT2G21860.1 | Symbols: | violaxanthin de-epoxidase-related |
chr2:9318258-9320002 REVERSE LENGTH=1656
Length=1656
Score = 2207 bits (1195), Expect = 0.0
Identities = 1461/1587 (92%), Gaps = 28/1587 (2%)
Strand=Plus/Plus
Query 3 GGCGATTTCTATCAAAGCTCCTTCTCTTTCGGGAACGAGAGAGTCTTCTTCCTTCCTTAA 62
||||||| || ||||||||||||||||| | ||||||||||||| |||| ||||||||||
Sbjct 18 GGCGATTCCTCTCAAAGCTCCTTCTCTTCCTGGAACGAGAGAGTGTTCTCCCTTCCTTAA 77
Query 63 CCGGTTTGTCACTCGTCAACCGGATT--TTGC-TAC-G--GTTAAATTCTACC---G--G 111
|||||| ||||||| |||||||| || || | | | | ||| || || || | |
Sbjct 78 CCGGTTCGTCACTCATCAACCGG-TTAATTTCATCCGGAAGTTTCATCCTTCCTTAGATG 136
Query 112 AAGCCTCGTCTTGCTTTGAATGAC--AAATCGTTCTCCATTGTTCGCTCG-GTTTTGGAG 168
|||| ||| || | | | ||| | || ||| |||| | ||| |||||||||
Sbjct 137 AAGCATCG--TT-C--TCCA-GACGGGGA-CG--AACCACTGTT-GTTCGCGTTTTGGAG 186
Query 169 ACTGAGAAGAGTACGAAGATAGAGAATCCTGAGCCTCCGGTGAAATTGATTTCTCTCGTC 228
|| |||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||
Sbjct 187 ACGGAGAAGAGTACGAAAATAGAGAAGCCTGAGCCTCCGGTGAAATTGATTGCTCTCGTC 246
Query 229 GGTAAAGGA-ACACTAAGCCCACTCAAATCCACCTCCTGGGAAGATGTTATGCTCCACAC 287
|| |||||| | | |||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 247 GGAAAAGGAGA-AGTAAGCCCACTCAAATCCACCTCTTGGGAAGAAGTTATGCTCCACAC 305
Query 288 TGCGAGAAGATTGAAATGGGTTGATGAAGGATATGAAATGCTCGTCTTTGATGATGAAAT 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 TGCGAGAAGATTGAAATGGGTTGATGAAGGATATGAAATGCTCGTCTTTGATGATGAAAT 365
Query 348 TCTGAGTTCAAATGATCAGAGAGCTTTGAATCTGAAACAGGAACTGAATCAGACTGATAT 407
| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 366 TGTGAGTTCAAATGATCAGAGAGCTATGAATCTGACACAGGAACTGAATCAGACTGATAT 425
Query 408 CTTGGTTGTTGTTGCTGTTAATAACTCAGAATCTGTGAATTGGATTTTGACTAACAGCAG 467
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 426 CTTGGTTGTCGTTGCTGTTAATAACTCAGAATCTGTGAATTGGATTCAGACTAACAGCAA 485
Query 468 AAATGTCAAGAACATGATTTGCTTTGAGTCTTCTTCAAATTTGATGAACAGGCTTGGAGG 527
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 486 AAACGTCAAGAACATGATTTGCTTTGAGTCTTCTCCAAATTTGATGAACAGGCTTGGAGG 545
Query 528 GACTGATATTGGAAGTGTGAATCAAGATAAACAAGTAACAGAGGTTGTGAAGACTGTAGG 587
||||||| |||||||||||||| |||||||| |||||||||||||||||||||| || ||
Sbjct 546 GACTGATGTTGGAAGTGTGAATAAAGATAAAGAAGTAACAGAGGTTGTGAAGACAGTGGG 605
Query 588 AGATGCTTGGGAACGTCGTAATTCTGATGATATAAGGTTTTGTTTGCTTGTGATTATCAA 647
||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 606 AGATGCTTGGGAACGTCGTAACTCTGATGATATAAGGTTTTGTTTGCTCGTGATCATCAA 665
Query 648 TGCTTATATAAGACCAGTTCCTGTGTTGCAGAACTTGAGGTCCAAAGGGTTTTCTACCCT 707
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||
Sbjct 666 CGCTTATATAAGACCAGTTCCTGTGTTGCAAAACTTGAGGTCCAAAGGTTTTTCGACGCT 725
Query 708 TACTTGTATGGTTAAAAACTGTGGACCTCAGATTTTGAACTGTCTTTTGGATCCGAATTG 767
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 TAGTTGCATGGTTAAAAACTGTGGACCTCAGATTTTGAACTGTCTTTTGGATCCGAATTG 785
Query 768 TCGAAAAGCTCTTCAGTGTTTGAACCAATGTAGTCCTGTGGATCAGGTGTGTAGCTACAG 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 TCGAAAAGCTCTTCAGTGTTTGAACCAATGTAGTCCTGTGGATCAGGTGTGTAGCTACAG 845
Query 828 ATGCATTGCTTCTTATGAGAGTCCTTACTTTGAAGCATTCTCTCTTTGTGTACTACAGAA 887
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 846 GTGCATTGCTTCTTATGAGGGTCCTTACTTTGAAGCGTTCTCTCTTTGTGTACTACAGAA 905
Query 888 ACACAATTGTTTAGAATTGGATGCAAAGATCCCTGAGAAGCCTTATGTGCCTCCCATGAC 947
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 GCACAATTGTTTAGAACTGGATGCAAAGATCCCTGAGAAGCCTTATGTGCCTCCCATGAC 965
Query 948 GAGTTTTCGAGGGAAGGAGTTGTGTCATGATACAGCAGAAGACTTGTTTGTTGGATGGTT 1007
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 966 GAGTTTTCGAGGGAAGGAGTTGTGTCATGATACAGCGGAAGACTTGTTTGTTGGGTGGTT 1025
Query 1008 AGGGGAATTGGATTGGAGCTGGCGTGTCGTGGCTGGACAAAACCCGGCTTATGATCAGTT 1067
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 AGGGGAATTGGAATGGAGCTGGCGTGTCGTGGCTGGACAAAACCCGGCTTATGATCAGTT 1085
Query 1068 TCCATGTCAGTACCAGCTTTTCTACAGAGGGAAAGGGAAGTCGGCTTTTTGGTATGAACC 1127
|||||||||||||||||| |||||||||||||||||||||||| | ||||||||||| ||
Sbjct 1086 TCCATGTCAGTACCAGCTATTCTACAGAGGGAAAGGGAAGTCGTCGTTTTGGTATGAGCC 1145
Query 1128 CGTGTTTCAGGTCAGAACGCTTGAAGAGAAGCTAGTGTGGAGAAGGAGGAGATACTCGGT 1187
||||||||||||||| ||||| ||||||||| | |||||||||||||| |||||||||||
Sbjct 1146 CGTGTTTCAGGTCAGGACGCTCGAAGAGAAGTTGGTGTGGAGAAGGAGAAGATACTCGGT 1205
Query 1188 TAAGAGAGGAAAGATCCCTGCAACATTTCGTTTCAGCGTTTTGGACAATGGTGTGGTGTC 1247
|||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1206 TAAGCGAGGAAAGATCCCTGCAACGTTTCGTTTCAGTGTTTTGGACAATGGTGTGGTGTC 1265
Query 1248 GAATGAGTTTTGGACTATTGTTGATGTATCTGATGATCTAAGTTGGGGACTGTTCCATTA 1307
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1266 AAATGAGTTTTGGACTATTGTGGATGTATCTGATGATCTAAGTTGGGGACTGTTCCATTA 1325
Query 1308 CAATGGAGCGGCTCGTGTTGCAGGACAGTCTTACACCGGGGCTGTGCTCGTGACACCGGA 1367
| ||||||| || ||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 1326 CCATGGAGCAGCACGTGTAGCAGGACAGTCTTACACCGGAGCTGTGCTTGTGACACCGGA 1385
Query 1368 TGGTTCCTACCCGGCAGAGAAGGAAAAGGAGAGATTGAAGTCTGCATTGGAGAAATGTGG 1427
|||||| ||||||||||||||||| |||||||||||| |||| |||||||||||||||||
Sbjct 1386 TGGTTCTTACCCGGCAGAGAAGGACAAGGAGAGATTGCAGTCAGCATTGGAGAAATGTGG 1445
Query 1428 GATTAAGGAGTGGGAACTCTTTACTGTTGACAATTGTTCTTGCGAAAATCCGCCATTGGG 1487
||||||||| |||||||||||| ||||||| ||||||||||| ||||| ||||| | ||
Sbjct 1446 GATTAAGGAATGGGAACTCTTTGCTGTTGATAATTGTTCTTGTGAAAACCCGCCGCTAGG 1505
Query 1488 GATTCCACAAGGCTCTAGACTACATTCGAGAATCAGTATCATAGAGGAACCAGACTCGGA 1547
||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1506 GATTCCACAGGGTTCTAGACTTCATTCGAGAATCAGTATCATAGAGGAACCAGACTCGGA 1565
Query 1548 AGAAAAATTCAACTAATTTTGCA-TGT 1573
||||||||||||||||||||||| |||
Sbjct 1566 AGAAAAATTCAACTAATTTTGCACTGT 1592
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79869067095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5