BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481052
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21880.1 | Symbols: ATRAB7A, ATRABG2, RAB7A | RAB GTPase hom... 1476 0.0
> AT2G21880.1 | Symbols: ATRAB7A, ATRABG2, RAB7A | RAB GTPase homolog
7A | chr2:9324633-9326321 REVERSE LENGTH=1056
Length=1056
Score = 1476 bits (799), Expect = 0.0
Identities = 964/1038 (93%), Gaps = 34/1038 (3%)
Strand=Plus/Plus
Query 1 TTTTTTCCTCCCAGAAGACAGAAGAAGAAGCAAGATCATCCAGACCAATCTCGTAGACTT 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 12 TTTTTTCCTCCCAGAAGACAGAAGAAGAAGCAAGATCATCAAGACCAATCTCGTAGACTT 71
Query 61 TTTGTCTCTGTCCAAAAACCAGAAAGAAACTTTCTTGGTaaaaaaaGGAGAACAATCTCG 120
|||||||||||||||||||| ||||||||||| |||| | ||||| |||||||||||||
Sbjct 72 CTTGTCTCTGTCCAAAAACCATAAAGAAACTTTATTGGCATAAAAA-GAGAACAATCTCG 130
Query 121 TAGA---TT---C-T-TGACAATGGATTCTTTGAAGAATAGAACATTGCTTAAGGTCATT 172
|||| || | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 TAGATTCTTGAGCTTCTGACAATGGATTCTTTGAAGAATAGAACATTGCTTAAGGTCATT 190
Query 173 GTTCTTGGAGATAGCGGGGTAGGCAAAACTTCATTGATGAATCAATATGTGTACAAGAAA 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 GTTCTTGGAGATAGCGGGGTAGGCAAAACTTCATTGATGAATCAATATGTGTACAAGAAA 250
Query 233 TTTAACAAGCAATATAAGGCCACGATCGGAGCAGATTTCGTCACCAAAGAGCTTCACATA 292
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 251 TTTAACAAGCAATATAAGGCTACGATCGGAGCAGATTTCGTCACCAAAGAGCTTCATATA 310
Query 293 GATGAAAAATCTGTCACTTTACAGATATGGGATACTGCAGGACAAGAGAGATTTCAAAGT 352
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 311 GATGAAAAATCTGTCACTTTACAGATATGGGATACCGCTGGACAAGAGAGATTTCAAAGT 370
Query 353 CTAGGGGCCGCATTCTATAGAGGTGCTGATTGTTGCGTTCTTGTGTACGATGTGAACAAT 412
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 371 CTAGGGGCCGCGTTCTATAGAGGTGCTGATTGTTGCGTTCTTGTCTACGACGTGAACAAT 430
Query 413 CTCAAATCTTTTGAAACTCTCAATAACTGGCACACAGAGTTCCTCAAACAGGCAAACCCT 472
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 431 CTCAAATCTTTTGAAACTCTCAATAACTGGCACACAGAGTTCCTCAAACAGGCAAATCCT 490
Query 473 ATGGAACCGGATACATTTCCCTTTGTTTTAATCGGGAACAAGACCGATGTAGATGGCGGG 532
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 491 ATGGAACCGGAGACATTTCCCTTTGTTTTGATCGGGAACAAGACCGATGTAGATGGCGGA 550
Query 533 AACAGCCGAGTTGTTTCAAATAAGAGAGCCATCGAGTGGTGTGGCTCAAAGGGGAACATA 592
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 551 AACAGCCGAGTTGTTTCAAATAAGAGAGCCATCGAGTGGTGTGGCTCAAAGGGAAACATA 610
Query 593 CTGTACCATGAAACCTCTGCGAAGGATGATACCAATGTCGATGAAGCTTTTTTGGGTGTT 652
| |||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||
Sbjct 611 CCGTACCATGAAACCTCTGCGAAGGAAGATACCAATATCGATGAAGCTTTTTTGAGTGTT 670
Query 653 GCACACATTGCTCTCGCCAATGAACGTAAACAAACCAATGACATATATCCTAGAGGC--G 710
||||||||||||||| | |||||||||||||||| |||||||||||||||||||||| |
Sbjct 671 GCACACATTGCTCTCTCTAATGAACGTAAACAAAGCAATGACATATATCCTAGAGGCCAG 730
Query 711 TAT-ATGACTCTGTTACGGATATTATTGACCCAGATCAGACAAGAGGTTGTGCTTGCTGA 769
||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 731 TATCATGACTCTGTTACGGATATTATTGATCCAGATCAGTCAAGAGGTTGTGCTTGCTGA 790
Query 770 TTC-ATATTTAACATATCTGATCAA-TAATATCGAGTCCCAGCTCttttattttcagtct 827
||| || ||| |||||||||||||| |||||||||||||||||||||| |||| |||||
Sbjct 791 TTCCATGTTTGACATATCTGATCAAATAATATCGAGTCCCAGCTCTTTCATTTGCAGTCC 850
Query 828 ttgtttttggtaacttttttt--atttattggtttaata-t--catttatAGAGAGGGTT 882
||||||||||||||||||||| |||||||||||||||| | ||||||||||| | ||
Sbjct 851 TTGTTTTTGGTAACTTTTTTTCTATTTATTGGTTTAATAATATCATTTATAGAG-G--TT 907
Query 883 TATTAAC------------TTGATATATGCTACTTTCTGAGTGTTTTGATTCATGTAAAG 930
||||||| |||||| || |||||||||||||||||||||||||||||||
Sbjct 908 TATTAACGACAAAAAACAGTTGATACATACTACTTTCTGAGTGTTTTGATTCATGTAAAG 967
Query 931 CATTAATTACTTTATATTTAATTTCTGTAAAACTTTTCGTTGAGACAACTTATTGTACCA 990
||||||||| ||| |||||||||| |||||| ||||||||||||| ||||||| ||||||
Sbjct 968 CATTAATTAATTTCTATTTAATTTTTGTAAACCTTTTCGTTGAGATAACTTATAGTACCA 1027
Query 991 TCACCGAATCACTTGGAT 1008
||||||||||||||||||
Sbjct 1028 TCACCGAATCACTTGGAT 1045
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49380166501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5