BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481060
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21950.1 | Symbols: SKIP6 | SKP1 interacting partner 6 | chr... 1772 0.0
> AT2G21950.1 | Symbols: SKIP6 | SKP1 interacting partner 6 | chr2:9353174-9354645
REVERSE LENGTH=1472
Length=1472
Score = 1772 bits (959), Expect = 0.0
Identities = 1078/1136 (95%), Gaps = 5/1136 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGCTACAACGAGCTCCGGCGACGACCCACCGGAAACGAAATCGCCGGCGCAATTG 60
||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 2 ATGGCGGCTACAACGAGCTCCGGCGACGAACCACCGGAAACAAAATCACCGGCGCAATTG 61
Query 61 ATTCCATTATTATCAGACGACGTTGCTCTGAATTGCCTTGCTCGCGTCTCAAGATGTCAC 120
||||| || |||||||| ||||||||||| | |||||||||||||||| | |||||||||
Sbjct 62 ATTCCGTTGTTATCAGAAGACGTTGCTCTCAGTTGCCTTGCTCGCGTCCCTAGATGTCAC 121
Query 121 CATCCGATCCTCTCTCTCGTCTCCAAGACTTTCCGATCTCTGCCAACATCGCCT-TTGCT 179
|||| |||||||| |||||||||||||||||||||||||| |||||||| ||| || ||
Sbjct 122 TATCCAATCCTCTCACTCGTCTCCAAGACTTTCCGATCTCTCCCAACATCACCTCTT-CT 180
Query 180 CTACGCCACGAGATCTCTCGTCGGCGCCACTGAAAACATCCTCTACGTCGCAATTCGTTT 239
||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| ||| |
Sbjct 181 CTACGCCACGAGAGCTCTCGTCGGAGCCACTGAAAACATCCTCTACGTAGCAATCCGTAT 240
Query 240 ACCTCCTGAATCTGGTGCGTGTTGGTTCACTCTTCTCCATCGAACCTTATC-AAGCTCAA 298
||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 241 ACCTCCTGAATCTGGTGCGTGTTGGTTCACTCTCCTCCATCGAACCTTATCGAA-CTCAA 299
Query 299 CGAATTCGAAAATGCTTGTTCCAATCCCGTCTTGTCCTTCACCGTCTCTTGTTGGATCTG 358
|||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |
Sbjct 300 CGAATTCGAAAATGCTTGTTCCAATCCCATCTTGTCCTTCACCGTCTCTAGTCGGATCCG 359
Query 359 CTTACGTTGTGGTAGATTCAGATATTTACGTGATCGGTGGATCTATCAGAGACGTACCTT 418
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 360 CTTACGTTGTGGTAGATTCAGAGATTTACGTGATCGGTGGATCTATTAGAGACGTGCCTT 419
Query 419 CTTCGAGCGTGTGGGTTCTCGATTGCAGATTTCATACTTGGCGACGAGTCTCTAATATGA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CTTCGAGCGTGTGGGTTCTCGATTGCAGATTTCATACTTGGCGACGAGTCTCTAATATGA 479
Query 479 GAGTAGGTCGTGAATTTGCAGCAGCTGGTGTAATCGATGGGAAGATTTATGTGATTGGAG 538
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 480 GAGTAGGTCGTGAATTTGCAGCAGCTGGTGTAATTGATGGGAAGATTTATGTGATTGGAG 539
Query 539 GATGTGTGGTTGATAATTGGGCTCGATCGATTAATTGGGCAGAGATGTTTGATATAAAGA 598
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 540 GATGTGTAGTTGATAATTGGGCTCGATCGATTAACTGGGCAGAGATGTTTGATATAAAGA 599
Query 599 CTCAAACTTGGGAGCCAGTGGCTAGTCCAGGTATGGAGGTGCGTGAGAAATGGATGCACG 658
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 600 CTCAAACTTGGGAGCCAGTGGCTAGTCCAGGTATGGAGGTTCGTGAGAAATGGATGCACG 659
Query 659 CAAGTGCGGTTATGGAAGGGAAGGTTTACGCAATGGCTGATCGAAATGGTGTTGTTTACG 718
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 660 CAAGTGCGGTTATGGAAGGGAAGGTTTACGCAATGGCTGATCGAAACGGTGTTGTTTACG 719
Query 719 AGCCCAAGGAAAAGAAATGGGATATGCCTGAGAAGAGGCTTGATTTGGGATGGAGAGGAA 778
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 720 AACCCAAGGAAAAGAAATGGGAGATGCCTGAGAAGAGGCTTGATTTGGGATGGAGAGGAA 779
Query 779 GAGCTTGTGTGATTGACAACATATTGTATTGTTATGATTACTTGGGGAAGATTAGAGGGT 838
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GAGCTTGTGTGATTGAGAACATATTGTATTGTTATGATTACTTGGGGAAGATTAGAGGGT 839
Query 839 ATGATCCAAAAGAGAGGATTTGGAGAGAGCTTAAAGGTGTGGATTCACTTCCTAAGTTTC 898
||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 840 ATGATCCAAAAGAGAGGATTTGGAGAGAGCTGAAAGGTGTGGAGTCACTTCCAAAGTTTC 899
Query 899 TTTGTGGGGCTACAATGGCGAATCGTGGTGGAAAGCTTGCGGTTTTGTGGGAAGGTAAAG 958
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 900 TTTGTGGGGCTACAATGGCTAATCGTGGTGGAAAGCTTACGGTTTTGTGGGAAGGTAAAG 959
Query 959 CTGGTAGTGGCGGTTCGAGGAGAATGGAGATTTGGTGTGCGGAGATTGATGTTGAAAGGC 1018
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 960 CTGGTAGTGGTGGTTCTAGGAGAATGGAGATTTGGTGTGCGGAGATTGATGTTGGAAGGC 1019
Query 1019 GTGGAGAAGGGGAGATTTGGGGGAAGATCGTGTGGTCTGGTACCGTGCTTACGGTTCCTA 1078
|||||||| ||||||||||||| || || | ||||||||||||||||||||||||||||
Sbjct 1020 GTGGAGAAAGGGAGATTTGGGGAAAAATTGAATGGTCTGGTACCGTGCTTACGGTTCCTA 1079
Query 1079 ATGAATCCGCCATTGTGAATTGCTTGGCAGCTACAGTTTGATGGTGATTCAT-CAT 1133
||||||| ||||||||||||||||||||||||||||||||||| |||| ||| |||
Sbjct 1080 ATGAATCTGCCATTGTGAATTGCTTGGCAGCTACAGTTTGATGATGATGCATACAT 1135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61345065990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5