BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481063
Length=1301
Score E
Sequences producing significant alignments: (Bits) Value
AT2G21990.1 | Symbols: | Protein of unknown function, DUF617 |... 1823 0.0
> AT2G21990.1 | Symbols: | Protein of unknown function, DUF617
| chr2:9359356-9360664 REVERSE LENGTH=1309
Length=1309
Score = 1823 bits (987), Expect = 0.0
Identities = 1222/1328 (92%), Gaps = 46/1328 (3%)
Strand=Plus/Plus
Query 1 AACTCGTTTGATTTGTTTTCACATGTTTTGAAATATACAGCTTTGTTTCCTACTCTTAAA 60
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||
Sbjct 1 AACTCGTTTGATTTGTTTTCACATGTCGTGAAATTTACAGCTTTGTTTCCTACTCTCAAA 60
Query 61 AATAGAGCATAGAGCTGGCTGATTACACTTCAAAATAAAAACAACAACTATATATAAACT 120
||||||||||||||||||||||| |||||||||| ||||| ||||||| ||||||||||
Sbjct 61 AATAGAGCATAGAGCTGGCTGATCACACTTCAAATTAAAACCAACAAC-GTATATAAACT 119
Query 121 ATAACCACAATGTGAACACAAAAATTTAGACCTTTTTCCAAAACCATTCCAATTTCTAAC 180
|||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 120 ATAACC-C-ATGTGAACACAAAAATTTAGACCTTTTTTCAAAACCATTCCAATTTCTAAC 177
Query 181 aaaaaaaacaaaattagaaatcctaaaaact-caaaggtg--t-g--tg----aaaggc- 229
||||||||||||||||||||||||| || | |||||| | | | ||||||
Sbjct 178 ---AAAAACAAAATTAGAAATCCTAAAATCTGC-AAGGTGTATGGAAGGCAAAAAAGGCT 233
Query 230 aa-a--a-T----ACA--TTA-ATTA---A-CCTCTTTAAAATAGAAAGAAGTTTTTCAA 274
|| | | | ||| ||| |||| | |||||||||||||||||||| ||||| |
Sbjct 234 AACAGGATTAAAAACAGTTTACATTAGTTATTCTCTTTAAAATAGAAAGAAGATTTTCGA 293
Query 275 TAAAAACGTCGTCGTATCCTCGTCGACGTCTCCGTCGTTAATGGGGGAGCAAAGGCCAAG 334
|||||||||||||||||| ||||||||||||||||| ||||||||||||| | |||
Sbjct 294 TAAAAACGTCGTCGTATCTTCGTCGACGTCTCCGTCTTTAATGGGGGAGC--A----AAG 347
Query 335 GGCAAGCGGTGCTTCCTCCTCCACCGACTCATATTCAACCCCTTCGCGGTCTCCGTCACC 394
||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||
Sbjct 348 GGCAAGCGGTGCTTCCTCCTCCACCGACTCATATTCAACTCCTTCGCCGTCTGCGTCACC 407
Query 395 GTCTCCATCTCCGGCGCCACGTCACCATGTCACGTTACTCGAACCATCTCATCAAAACAA 454
||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 408 GTCTCCATCTCCGGCTCCACGTCAACATGTCACGTTACTCGAACCATCTCATCAACACAA 467
Query 455 GAAGAAAAGCAAAAAAGTCTTCCGAGTTTTTCGTTCGGTTTTCCGTTCTTTCCCGATCAT 514
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 468 GAAGAAAAGCAAAAAAGTCTTCCGAGTTTTTCGTTCGGTTTTCCGATCTTTCCCGATCAT 527
Query 515 CACACCGGCAGCTTGCAAAATCCCGGTCCTCCCAGGCGGTAGCTTACCCGACCCTCATCG 574
||||||||||||||||||||||||||||||||| |||||||||||||| |||| || ||
Sbjct 528 CACACCGGCAGCTTGCAAAATCCCGGTCCTCCCCGGCGGTAGCTTACCTGACCAGCACCG 587
Query 575 AAGCGGATCAAGCGGATCAAGAGTTACAGGAACCTTGTTCGGATACCGTAAAGGCCGTGT 634
|||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 588 AAGCGGGTCAAGCGGATCAAGAGTTACCGGAACCTTATTCGGATACCGTAAAGGCCGTGT 647
Query 635 AAGCCTCTCGATTCAAGAAAGCCCTAGATGTTTACCATCTCTCGTCGTCGAGCTTGCGAT 694
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 648 AAGCCTCTCGATTCAAGAAAGCCCTAGATGTTTACCATCTCTCGTCGTCGAGCTCGCAAT 707
Query 695 GCAAACAATGGTGCTACAAAAAGAACTTAGCGGAGGGATGGTTAGGATCGCGTTAGAGAC 754
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 708 GCAAACAATGGTGCTACAAAAAGAGCTTAGCGGAGGGATGGTTAGGATCGCGTTAGAGAC 767
Query 755 AGAGAAACGAGGTGATAAAGAGAAGACCAAGATCATGGACGAGCCATTATGGACAATGTT 814
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 768 AGAGAAACGAGGTGATAAAGAGAAGATCAAGATCATGGACGAGCCATTATGGACAATGTT 827
Query 815 TTGTAACGGTAAGAAAACGGGGTACGGTGTGAAACGTGACGCGACGGAGGAAGATCTCAA 874
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 828 TAGTAACGGTAAGAAAACGGGGTACGGTGTGAAACGTGACGCGACGGAGGAAGACCTCAA 887
Query 875 CGTTATGGAGTTGTTAAGACCAGTTTCGATGGGTGCCGGAGTTTTGCCGGGGAACTCGGA 934
|||||||||| | |||||||| |||||||||||||||||||||||||| |||||| ||||
Sbjct 888 CGTTATGGAGCTATTAAGACCGGTTTCGATGGGTGCCGGAGTTTTGCCAGGGAACACGGA 947
Query 935 GGTTGAAGGACCTGACTCGGAGATGGCTTACATGAGGGCTTATTTCGAACGAGTCGTTGG 994
| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 948 GTTTGAAGGACCAGACTCGGAGATGGCTTACATGAGGGCTTACTTCGAACGAGTCGTTGG 1007
Query 995 GTCTAAAGATTCAGAGACATTTTACATGTTGAGTCCCGAAGGAAATAATGGACCCGAACT 1054
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1008 GTCTAAAGATTCAGAGACATTTTATATGTTGAGTCCCGAAGGAAATAATGGACCAGAACT 1067
Query 1055 TAGTATCTTCTTCGTAAGAGTATGATTTGATGTAATATATGGTCGGAGGAGATATGCGTT 1114
|||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 1068 TAGTATCTTCTTCGTAAGAGTATGATTTGATGTAATATATGGTCGGAG-A-A-ATGCGTT 1124
Query 1115 GTTGATTGATAGCGGTTTAAGGATTGATTTGTGATTATATGATCATGAT-GATATGTGTG 1173
||||| ||| | |||| |||||||| ||||||||||||||||| || ||||||||||
Sbjct 1125 CTTGATCGATCTCAGTTTGTGGATTGATATGTGATTATATGATCAT-ATTGATATGTGTG 1183
Query 1174 TATATGCATGGGTCCTTTTGGTGGTGAGGTATATGAGGACGGATTTGGAGGTAATATTGT 1233
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1184 TATATGCGTGGGTCCTTTTGGTGGTGAGGTATATGAGGATGGATTTGGAGGTAATATTGT 1243
Query 1234 TCTTTAGGATGATTTATATaaaaaaaGTGTTTCAGGTTGATACATGCAAACTAATTCACG 1293
|||||||||||||||||| |||||| |||||||||||| |||||| |||| |||||||||
Sbjct 1244 TCTTTAGGATGATTTATA-AAAAAA-GTGTTTCAGGTTAATACATACAAATTAATTCACG 1301
Query 1294 TTTGATTT 1301
||||||||
Sbjct 1302 TTTGATTT 1309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64005694875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5