BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481064
Length=596
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22000.1 | Symbols: PROPEP6 | elicitor peptide 6 precursor |... 778 0.0
AT2G22010.2 | Symbols: RKP | related to KPC1 | chr2:9363109-936... 143 2e-33
> AT2G22000.1 | Symbols: PROPEP6 | elicitor peptide 6 precursor
| chr2:9362312-9363203 FORWARD LENGTH=612
Length=612
Score = 778 bits (421), Expect = 0.0
Identities = 558/619 (90%), Gaps = 30/619 (5%)
Strand=Plus/Plus
Query 1 AGAGAAGCAGGTGAGGTCAAACTAGACACAACACTTAATGCATTGAGCagaagaagaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAGAAGCAGGTGAGGTCAAACTAGACACAACACTTAATGCATTGAGCAGAAGAAGAAGA 60
Query 61 -g--gaagaattaagaagagaaagaaaacaaaaaataaggatggaagttaaaggagaaga 117
| ||||||||||||||||||||||||||||||| | |||||||||| ||||||||
Sbjct 61 AGAAGAAGAATTAAGAAGAGAAAGAAAACAAAAAACA----TGGAAGTTAATGGAGAAGA 116
Query 118 agagagaagaagtagaagagaagatgaagaaaaagaagaTTA-T--TACTCTCTTCTCAA 174
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 117 AGAGAGAAGAAGTAGAAGAGAAGATGAAGAAAAAGAAGATTACTACTACTCTCTTCTCAA 176
Query 175 CTCTCCATGTTCTGCTTGTCACAAAGTTGTTAAAGCCATATTGAAGTGTCTTGGCCTTGA 234
|||||||||||||| |||| ||||| ||||| |||||||||||||||||||||| |||||
Sbjct 177 CTCTCCATGTTCTGTTTGTAACAAATTTGTTCAAGCCATATTGAAGTGTCTTGGTCTTGA 236
Query 235 GtcatcatcaataccaccaccatcatcctcatcttcatcatcatTAGAAGAAGAAGAAGA 294
||||||||||||||||||| | ||||| ||||| ||| |||| |||| ||||||||||||
Sbjct 237 GTCATCATCAATACCACCATCTTCATCATCATCATCACCATCCTTAGTAGAAGAAGAAGA 296
Query 295 TCCAGGAACTGAAACTGTTGAAGAAACAGGATTTATTGCGAGGATTACAGGAGTGTTAAG 354
| |||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||
Sbjct 297 TTCAGGAACTGAAACTGTTGAAGAAACAGGATTTATGGCGAGGATAACAGCAGTGTTAAG 356
Query 355 AAGGAGACCAAGACCACC---TTATAGCTCAGGACGACCTGGTCAAAACAATTGATTCTG 411
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 357 AAGGAGACCAAGACCACCACCTTATAGCTCAGGACGACCTGGTCAAAACAATTGATTCTG 416
Query 412 ATTAACACTCTTAAAAAGACAAGCTTATGTCTCTTTGTGTG--TCTTCTTGTTGTTTAAA 469
|||||||||| | || ||||||||| ||||||| ||||| |||||||||||||||||
Sbjct 417 ATTAACACTCCTGAA--GACAAGCTTGTGTCTCTCCGTGTGGATCTTCTTGTTGTTTAAA 474
Query 470 ACTCACTTGTGATCTTCAttttttttt-----------ggttctgtcagcggttttgctt 518
| |||||| ||||||| |||||||||| |||| ||| |||||||| ||||
Sbjct 475 ATTCACTTATGATCTTTATTTTTTTTTACCATTTTTTTGGTTATGTGAGCGGTTT-GCTT 533
Query 519 ttttttt-ttCTTTATTTATCTGAAATAAGACAAAATTGGTAAGACTCTTTTGTAACATA 577
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 534 TTTTTTTCTTCTTAATTTATCTGAAATAAGACAAAATTGGTAAGACTCTTTTGTAAAATA 593
Query 578 GATTTCATGTTTACCTTCT 596
| |||||||||||||||||
Sbjct 594 GTTTTCATGTTTACCTTCT 612
> AT2G22010.2 | Symbols: RKP | related to KPC1 | chr2:9363109-9369461
REVERSE LENGTH=5143
Length=5143
Score = 143 bits (77), Expect = 2e-33
Identities = 90/96 (94%), Gaps = 2/96 (2%)
Strand=Plus/Minus
Query 502 tgtcagcggttttgcttttttttt-ttCTTTATTTATCTGAAATAAGACAAAATTGGTAA 560
||| ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 5143 TGTGAGCGG-TTTGCTTTTTTTTTCTTCTTAATTTATCTGAAATAAGACAAAATTGGTAA 5085
Query 561 GACTCTTTTGTAACATAGATTTCATGTTTACCTTCT 596
||||||||||||| |||| |||||||||||||||||
Sbjct 5084 GACTCTTTTGTAAAATAGTTTTCATGTTTACCTTCT 5049
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28683697937
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5