BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481068

Length=899
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G22050.1 | Symbols:  | Galactose oxidase/kelch repeat superf...   405    4e-112


> AT2G22050.1 | Symbols:  | Galactose oxidase/kelch repeat superfamily 
protein | chr2:9376684-9377862 FORWARD LENGTH=1090
Length=1090

 Score =  405 bits (219),  Expect = 4e-112
 Identities = 252/268 (94%), Gaps = 1/268 (0%)
 Strand=Plus/Plus

Query  1    ATGTCTCCTTCTTCGAAGAAGTTTAAGAAACAATCTTCCTCTAAAGCAGTTAAGCCACCG  60
            ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct  1    ATGTCTCCTTCTTCGAAGAAGTTTAAGAAACAATCTTCCTCCAAATCAGTTAAGCCACCG  60

Query  61   CTAGAAGATAACGATCCGTCCTTGCCGTCGTTTTCTTCACTGCCCGACGAAATCGTATTG  120
            |||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| |||
Sbjct  61   CTAGAAGATAACGATCCGTCCTTGCCATCGTTTACTTCATTGCCCGACGAAATCGTTTTG  120

Query  121  GACTGCTTGCAACGTGTCCCTAGAAGCTATTACCTAAACCTCTGTCGAGTTTCCAAAACC  180
            |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  121  GACTGCTTGCAACGTGTCCCAAGAAGCTATTACCTAAACCTCTGTCGAGTCTCCAAAACC  180

Query  181  CTAAGGTCCCTTGTTCGGTCGCCTGAGCTCTCCCGTTTGCGATCTCTCCTTCCAAAGAAA  240
            |||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| 
Sbjct  181  CTAAGGTCCCTTGTTCGGTCACCTGAGCTCTCCCGTTTGCGAACTCTCCTCCCAAAGAAT  240

Query  241  TCTGTCTATGTCTC-TTCAGTGAAAACA  267
            |||||||| ||||| |||||  ||||||
Sbjct  241  TCTGTCTACGTCTCCTTCAGCCAAAACA  268


 Score =  385 bits (208),  Expect = 5e-106
 Identities = 270/297 (91%), Gaps = 16/297 (5%)
 Strand=Plus/Plus

Query  619   GTTGGGAGAATCGGTGTGTATGATCCGAGAGAAGCAGGGGTTGATGGGGTTTGACGTAAA  678
             |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  727   GTTGGGAGAATCGGTGTGTATGATCCGAGAGAAGCAGGGGTTGATGGGTTTTGACGTAAA  786

Query  679   CCGCAAGGTATGGGTTAAAGTGGTTGGTTTAAAGACACTTAATGTCAAGTTTGATGTCTC  738
              ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  787   GCGCAAGGTATGGGTTAAAGTGGTTGGTTTGAAGACACTTAATGTCAAGTTTGATGTCTC  846

Query  739   TGTGATGGCGGAATACGATGGAAAGCTAGCGATTTTGTGGAGTGAGATTGATGACACGAA  798
             |||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct  847   TGTGATGGCGGAGTACGATGGAAAGCTAGCGATTTTGTGGAGTGAGATTGATCAAACGAA  906

Query  799   GACGGAGAAGGGATTCGTGGGACGATTGAGTGGTCTGGCATTGTGGCCACAATGA-----  853
             || |||||||||||||| |||||||| ||||||||||| ||||||||||||||||     
Sbjct  907   GATGGAGAAGGGATTCGCGGGACGATCGAGTGGTCTGGTATTGTGGCCACAATGACAAAT  966

Query  854   -------GT---TT-CATAATTGTTTAGTTGTTTCTGATTGATAGGGTTTTGTTGCA  899
                    ||   || |||||||||||||||||||||||||||||| |||||||||||
Sbjct  967   ATTCATTGTGAGTTTCATAATTGTTTAGTTGTTTCTGATTGATAGTGTTTTGTTGCA  1023



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 43904644478


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5