BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481069 Length=658 Score E Sequences producing significant alignments: (Bits) Value AT1G20140.1 | Symbols: ASK4, SK4 | SKP1-like 4 | chr1:6986358-6... 704 0.0 AT2G25700.1 | Symbols: ASK3, SK3 | SKP1-like 3 | chr2:10948747-... 693 0.0 > AT1G20140.1 | Symbols: ASK4, SK4 | SKP1-like 4 | chr1:6986358-6987270 FORWARD LENGTH=755 Length=755 Score = 704 bits (381), Expect = 0.0 Identities = 591/683 (87%), Gaps = 51/683 (7%) Strand=Plus/Plus Query 9 GAAGAAGATCATCCTCAAGAGCTCCGACGGTGAATCCTTCGAGGTCGATGAAGCCGTCGC 68 ||||| ||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 87 GAAGATGATCATCCTTAAGAGCTCCGACGGTGAATCCTTCGAGATCGAGGAAGCCGTCGC 146 Query 69 GGTTGAGTCCCAGACGATTAAGCACATGATCGAGGACGACTGCGCCGATAACGGAATTCC 128 ||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 147 TGTTAAGTCCCAGACGATTAAGCACATGATTGAGGACGACTGTGCCGATAACGGAATTCC 206 Query 129 CCTTCCCAATGTCACCGGAGCCATCCTCGCGAAGGTTATTGAGTACTGCAAGAAGCACGT 188 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 207 ACTTCCCAATGTCACCGGAGCCATCCTCGCCAAGGTTATTGAGTATTGCAAGAAGCACGT 266 Query 189 TGAAGCCGCGGCTGAGGCTGACGGAGATAAGGATTTCTGTGGTTCCACTGAGAACGATGA 248 ||||||||| ||||| |||| ||||| |||||||||| ||||||| |||||||||| || Sbjct 267 TGAAGCCGCTGCTGAAGCTGGTGGAGACAAGGATTTCTATGGTTCCGCTGAGAACGACGA 326 Query 249 ACTTAAGGCA-TGGGACAGCGACTTCGTCAAAGTTGATCAGCCTACTCTCTTCGATCTCA 307 ||||| | | ||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 327 GCTTAA-GAATTGGGACAGCGAATTCGTCAAAGTCGATCAGCCTACTCTCTTCGATCTCA 385 Query 308 TCCTGGCTGCTAACTATTTGAACATCAGTGGACTTCTTGACCTAACGTGCAAGGCCGTGG 367 || ||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct 386 TCTTGGCTGCGAACTATTTGAACATCGGTGGACTTCTTGACCTTACGTGCAAGGCCGTGG 445 Query 368 CTGAT-ATGATGAGAGGCAAAACTCCAGAGCAGATGCGTG-AGCACTTCAACATCAAGAA 425 ||||| | |||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 446 CTGATCA-GATGAGAGGCAAAACTCCAGAGCAGATGCGTGCA-CACTTCAACATCAAGAA 503 Query 426 CGATTACACACCTGAGGAAGAAGCGGAGGTTCGCAATGAGAACAAATGGGCGTTCGAGTG 485 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 504 CGATTACACACCTGAGGAAGAGGCGGAGGTTCGCAATGAGAACAAGTGGGCGTTCGAGTG 563 Query 486 Attggattggattct------t-tttag-a-t-t-t-gt-ttagct-ttca-a-g----- 524 ||||||| |||| || | ||||| | | | | || || || || | | | Sbjct 564 ATTGGATCGGAT-CTGAAGGGTGTTTAGGAATCTCTAGTCTTT-CTATTTAGATGTGTTT 621 Query 525 a--tttcg-gatt--ggctt-tttctttctt-tt-ctttt-cttttGGTTTGGAGTTGTT 575 | |||| |||| || || ||| ||| || || ||||| || || | |||||||||| Sbjct 622 AGCTTTCAAGATTTCGGATTGTTTTTTTTTTCTTTCTTTTTCTCTTCGATTGGAGTTGT- 680 Query 576 CCTTGTCTTTAGAATTTAAGAAGAAAACCTAATGCTTTGTTCTACTAACAAAATCTATTG 635 ||||||| || | ||| || |||||||||||||||||||||||| |||||||| Sbjct 681 CCTTGTC----GA-T----GAA-AA--CCTAATGCTTTGTTCTACTAACAACATCTATTG 728 Query 636 GTTTTTATGAAAAATATTTGAGA 658 |||||||||| |||||||||||| Sbjct 729 GTTTTTATGAGAAATATTTGAGA 751 > AT2G25700.1 | Symbols: ASK3, SK3 | SKP1-like 3 | chr2:10948747-10949626 REVERSE LENGTH=734 Length=734 Score = 693 bits (375), Expect = 0.0 Identities = 448/484 (93%), Gaps = 2/484 (0%) Strand=Plus/Plus Query 9 GAAGAAGATCATCCTCAAGAGCTCCGACGGTGAATCCTTCGAGGTCGATGAAGCCGTCGC 68 ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 90 GAAGATGATCATCCTCAAGAGCTCCGACGGTGAATCCTTCGAGGTCGAGGAAGCCGTCGC 149 Query 69 GGTTGAGTCCCAGACGATTAAGCACATGATCGAGGACGACTGCGCCGATAACGGAATTCC 128 ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 150 GGTCGAGTCCCAGACGATTAAGCACATGATCGAGGACGACTGCGTCGATAACGGAATTCC 209 Query 129 CCTTCCCAATGTCACCGGAGCCATCCTCGCGAAGGTTATTGAGTACTGCAAGAAGCACGT 188 |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 210 ACTTCCCAATGTCACCGGAGCCATCCTCGCGAAGGTTATCGAGTACTGCAAGAAACACGT 269 Query 189 TGAAGCCGCGGCTGAGGCTGACGGAGATAAGGATTTCTGTGGTTCCACTGAGAACGATGA 248 ||||||||| |||||||||| ||||| |||||||||| ||||||||| |||||| | || Sbjct 270 TGAAGCCGCTGCTGAGGCTGGTGGAGACAAGGATTTCTATGGTTCCACCGAGAACCACGA 329 Query 249 ACTTAAGGCATGGGACAGCGACTTCGTCAAAGTTGATCAGCCTACTCTCTTCGATCTCAT 308 || ||| | ||||||| ||| ||||||||||||||||| |||||||||||||||||| | Sbjct 330 GCTCAAGACTTGGGACAACGATTTCGTCAAAGTTGATCATCCTACTCTCTTCGATCTCCT 389 Query 309 CCTGGCTGCTAACTATTTGAACATCAGTGGACTTCTTGACCTAACGTGCAAGGCCGTGGC 368 | |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 390 TCGGGCTGCCAACTATTTGAACATCAGTGGACTTCTTGACCTTACGTGCAAGGCCGTGGC 449 Query 369 TGAT-ATGATGAGAGGCAAAACTCCAGAGCAGATGCGTGAGCACTTCAACATCAAGAACG 427 |||| | |||||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 450 TGATCA-GATGAGAGGCAAAACTCCAGCGCAGATGCGTGAACACTTCAACATCAAGAACG 508 Query 428 ATTACACACCTGAGGAAGAAGCGGAGGTTCGCAATGAGAACAAATGGGCGTTCGAGTGAt 487 | ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| Sbjct 509 ACTACACACCTGAGGAAGAGGCCGAGGTTCGCAATGAGAACAGGTGGGCGTTCGAGTGAT 568 Query 488 tgga 491 |||| Sbjct 569 TGGA 572 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31798215051 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5