BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481069
Length=658
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20140.1 | Symbols: ASK4, SK4 | SKP1-like 4 | chr1:6986358-6... 704 0.0
AT2G25700.1 | Symbols: ASK3, SK3 | SKP1-like 3 | chr2:10948747-... 693 0.0
> AT1G20140.1 | Symbols: ASK4, SK4 | SKP1-like 4 | chr1:6986358-6987270
FORWARD LENGTH=755
Length=755
Score = 704 bits (381), Expect = 0.0
Identities = 591/683 (87%), Gaps = 51/683 (7%)
Strand=Plus/Plus
Query 9 GAAGAAGATCATCCTCAAGAGCTCCGACGGTGAATCCTTCGAGGTCGATGAAGCCGTCGC 68
||||| ||||||||| ||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 87 GAAGATGATCATCCTTAAGAGCTCCGACGGTGAATCCTTCGAGATCGAGGAAGCCGTCGC 146
Query 69 GGTTGAGTCCCAGACGATTAAGCACATGATCGAGGACGACTGCGCCGATAACGGAATTCC 128
||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 147 TGTTAAGTCCCAGACGATTAAGCACATGATTGAGGACGACTGTGCCGATAACGGAATTCC 206
Query 129 CCTTCCCAATGTCACCGGAGCCATCCTCGCGAAGGTTATTGAGTACTGCAAGAAGCACGT 188
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 207 ACTTCCCAATGTCACCGGAGCCATCCTCGCCAAGGTTATTGAGTATTGCAAGAAGCACGT 266
Query 189 TGAAGCCGCGGCTGAGGCTGACGGAGATAAGGATTTCTGTGGTTCCACTGAGAACGATGA 248
||||||||| ||||| |||| ||||| |||||||||| ||||||| |||||||||| ||
Sbjct 267 TGAAGCCGCTGCTGAAGCTGGTGGAGACAAGGATTTCTATGGTTCCGCTGAGAACGACGA 326
Query 249 ACTTAAGGCA-TGGGACAGCGACTTCGTCAAAGTTGATCAGCCTACTCTCTTCGATCTCA 307
||||| | | ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 327 GCTTAA-GAATTGGGACAGCGAATTCGTCAAAGTCGATCAGCCTACTCTCTTCGATCTCA 385
Query 308 TCCTGGCTGCTAACTATTTGAACATCAGTGGACTTCTTGACCTAACGTGCAAGGCCGTGG 367
|| ||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 386 TCTTGGCTGCGAACTATTTGAACATCGGTGGACTTCTTGACCTTACGTGCAAGGCCGTGG 445
Query 368 CTGAT-ATGATGAGAGGCAAAACTCCAGAGCAGATGCGTG-AGCACTTCAACATCAAGAA 425
||||| | |||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 446 CTGATCA-GATGAGAGGCAAAACTCCAGAGCAGATGCGTGCA-CACTTCAACATCAAGAA 503
Query 426 CGATTACACACCTGAGGAAGAAGCGGAGGTTCGCAATGAGAACAAATGGGCGTTCGAGTG 485
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 504 CGATTACACACCTGAGGAAGAGGCGGAGGTTCGCAATGAGAACAAGTGGGCGTTCGAGTG 563
Query 486 Attggattggattct------t-tttag-a-t-t-t-gt-ttagct-ttca-a-g----- 524
||||||| |||| || | ||||| | | | | || || || || | | |
Sbjct 564 ATTGGATCGGAT-CTGAAGGGTGTTTAGGAATCTCTAGTCTTT-CTATTTAGATGTGTTT 621
Query 525 a--tttcg-gatt--ggctt-tttctttctt-tt-ctttt-cttttGGTTTGGAGTTGTT 575
| |||| |||| || || ||| ||| || || ||||| || || | ||||||||||
Sbjct 622 AGCTTTCAAGATTTCGGATTGTTTTTTTTTTCTTTCTTTTTCTCTTCGATTGGAGTTGT- 680
Query 576 CCTTGTCTTTAGAATTTAAGAAGAAAACCTAATGCTTTGTTCTACTAACAAAATCTATTG 635
||||||| || | ||| || |||||||||||||||||||||||| ||||||||
Sbjct 681 CCTTGTC----GA-T----GAA-AA--CCTAATGCTTTGTTCTACTAACAACATCTATTG 728
Query 636 GTTTTTATGAAAAATATTTGAGA 658
|||||||||| ||||||||||||
Sbjct 729 GTTTTTATGAGAAATATTTGAGA 751
> AT2G25700.1 | Symbols: ASK3, SK3 | SKP1-like 3 | chr2:10948747-10949626
REVERSE LENGTH=734
Length=734
Score = 693 bits (375), Expect = 0.0
Identities = 448/484 (93%), Gaps = 2/484 (0%)
Strand=Plus/Plus
Query 9 GAAGAAGATCATCCTCAAGAGCTCCGACGGTGAATCCTTCGAGGTCGATGAAGCCGTCGC 68
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 90 GAAGATGATCATCCTCAAGAGCTCCGACGGTGAATCCTTCGAGGTCGAGGAAGCCGTCGC 149
Query 69 GGTTGAGTCCCAGACGATTAAGCACATGATCGAGGACGACTGCGCCGATAACGGAATTCC 128
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 150 GGTCGAGTCCCAGACGATTAAGCACATGATCGAGGACGACTGCGTCGATAACGGAATTCC 209
Query 129 CCTTCCCAATGTCACCGGAGCCATCCTCGCGAAGGTTATTGAGTACTGCAAGAAGCACGT 188
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 210 ACTTCCCAATGTCACCGGAGCCATCCTCGCGAAGGTTATCGAGTACTGCAAGAAACACGT 269
Query 189 TGAAGCCGCGGCTGAGGCTGACGGAGATAAGGATTTCTGTGGTTCCACTGAGAACGATGA 248
||||||||| |||||||||| ||||| |||||||||| ||||||||| |||||| | ||
Sbjct 270 TGAAGCCGCTGCTGAGGCTGGTGGAGACAAGGATTTCTATGGTTCCACCGAGAACCACGA 329
Query 249 ACTTAAGGCATGGGACAGCGACTTCGTCAAAGTTGATCAGCCTACTCTCTTCGATCTCAT 308
|| ||| | ||||||| ||| ||||||||||||||||| |||||||||||||||||| |
Sbjct 330 GCTCAAGACTTGGGACAACGATTTCGTCAAAGTTGATCATCCTACTCTCTTCGATCTCCT 389
Query 309 CCTGGCTGCTAACTATTTGAACATCAGTGGACTTCTTGACCTAACGTGCAAGGCCGTGGC 368
| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 390 TCGGGCTGCCAACTATTTGAACATCAGTGGACTTCTTGACCTTACGTGCAAGGCCGTGGC 449
Query 369 TGAT-ATGATGAGAGGCAAAACTCCAGAGCAGATGCGTGAGCACTTCAACATCAAGAACG 427
|||| | |||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 450 TGATCA-GATGAGAGGCAAAACTCCAGCGCAGATGCGTGAACACTTCAACATCAAGAACG 508
Query 428 ATTACACACCTGAGGAAGAAGCGGAGGTTCGCAATGAGAACAAATGGGCGTTCGAGTGAt 487
| ||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||
Sbjct 509 ACTACACACCTGAGGAAGAGGCCGAGGTTCGCAATGAGAACAGGTGGGCGTTCGAGTGAT 568
Query 488 tgga 491
||||
Sbjct 569 TGGA 572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31798215051
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5